From: cooperl Date: Tue, 8 Oct 2024 17:31:02 +0000 (+0000) Subject: Fixing a few of the rice gene annotations X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=b2b5c31929f9718d05f65d3528bd484e1cec64fa;p=associations%2F.git Fixing a few of the rice gene annotations svn path=/; revision=1075 --- diff --git a/po-associations/po_anatomy_gene_oryza_poc.assoc b/po-associations/po_anatomy_gene_oryza_poc.assoc index d2ceee5..35d12d8 100644 --- a/po-associations/po_anatomy_gene_oryza_poc.assoc +++ b/po-associations/po_anatomy_gene_oryza_poc.assoc @@ -1446,7 +1446,7 @@ RAP-DB Os04g0504700 Os04g0504700 PO:0009089 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os04g0505300 Os04g0505300 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os04g0508300 Os04g0508300 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Glutaredoxin OsGrx_C2 gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os04g0508800 Os04g0508800 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Retroelement pol polyprotein-like zinc finger family protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal -RAP-DB Os04g0510600 Os04g0510600 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A TPR-like domain containing protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal +RAP-DB Os04g0510600 OsEnS-67 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A endosperm-specific gene 67 gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os04g0510900 Os04g0510900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Embryo-specific protein 1 (ATS1) caleosin related protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os04g0511200 Os04g0511200 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A EFA27 for EF hand, abscisic acid, 27kD caleosin related protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os04g0512500 Os04g0512500 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal @@ -1674,7 +1674,7 @@ RAP-DB Os05g0300200 Os05g0300200 PO:0009089 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os05g0300700 Os05g0300700 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A DDT domain containing protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os05g0304800 Os05g0304800 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Histone-fold domain containing protein histone-like transcription factor and archaeal histone, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os05g0307400 Os05g0307400 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Regulatory associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein) Splice isoform 5 double-stranded RNA binding motif containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal -RAP-DB Os05g0312600 Os05g0312600 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Calcium-binding EF-hand domain containing protein OsCML21 - Calmodulin-related calcium sensor protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal +RAP-DB Os05g0312600 OsCML21 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A calmodulin-like protein 21 gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os05g0316400 Os05g0316400 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Hypothetical protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os05g0316800 Os05g0316800 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Ethylene-responsive element binding protein AP2 domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os05g0327100 Os05g0327100 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Plant MuDR transposase domain containing protein transposon protein, putative, Mutator sub-class gene taxon:39947 20121019 POC:Pankaj_Jaiswal @@ -7469,7 +7469,7 @@ RAP-DB Os06g0623600 Os06g0623600 PO:0020039 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os06g0624900 Os06g0624900 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein of unknown function DUF597 family protein zinc-binding protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0625300 Os06g0625300 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidoglycan-binding LysM domain containing protein LYK8, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0625400 Os06g0625400 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase M16, C-terminal domain containing protein M16 domain containing zinc peptidase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) -RAP-DB Os06g0625900 Os06g0625900 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Potassium transporter 8 (AtPOT8) (AtHAK8) Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) +RAP-DB Os06g0625900 OsHAK10 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A High-affinity Potassium(K+) Transporter 10 gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0632700 Os06g0632700 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Octicosapeptide/Phox/Bem1p domain containing protein transposon protein, putative, unclassified, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0634300 Os06g0634300 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Growth factor like protein hydrolase, NUDIX family, domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0634800 Os06g0634800 PO:0020039 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007134)|participates_in(PO:0007130) @@ -13355,7 +13355,7 @@ RAP-DB Os02g0519800 Os02g0519800 PO:0025281 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os02g0520100 Os02g0520100 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A NUDIX hydrolase domain containing protein hydrolase, NUDIX family, domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os02g0520800 Os02g0520800 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 11022) (Rieske iron-sulfur protein) (RISP) cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os02g0521800 Os02g0521800 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein hypothetical protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) -RAP-DB Os02g0523800 Os02g0523800 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Inositol polyphosphate kinase family protein inositol hexaphosphate kinase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) +RAP-DB Os02g0523800 OsIPK2 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A inositol polyphosphate kinase 2 gene taxon:39947 20121019 POC:Pankaj_Jaiswal|PO:cooperl participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os02g0527500 Os02g0527500 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os02g0529400 Os02g0529400 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Plant neutral invertase family protein neutral/alkaline invertase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os02g0529500 Os02g0529500 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A SNAP25-like protein C (Fragment) SNARE domain containing protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) @@ -17759,7 +17759,7 @@ RAP-DB Os06g0320900 Os06g0320900 PO:0009047 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os06g0335500 Os06g0335500 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A AUX/IAA protein family protein OsIAA21 - Auxin-responsive Aux/IAA gene family member, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0338200 Os06g0338200 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Copper amine oxidase family protein copper methylamine oxidase precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0338700 Os06g0338700 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Copper amine oxidase family protein copper methylamine oxidase precursor, putative gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) -RAP-DB Os06g0354500 Os06g0354500 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Acyl-CoA oxidase ACX3 acyl-coenzyme A oxidase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) +RAP-DB Os06g0354500 OsACX3 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Acyl-CoA oxidase ACX3 gene taxon:39947 20121019 POC:Pankaj_Jaiswal|PO:cooperl participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0359400 Os06g0359400 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein 60S ribosomal protein L18a-1, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0364500 Os06g0364500 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0475400 Os06g0475400 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein of unknown function DUF563 family protein glycosyltransferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) @@ -20235,7 +20235,7 @@ RAP-DB Os02g0611500 Os02g0611500 PO:0009066 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os02g0620400 Os02g0620400 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein of unknown function DUF861 family protein enzyme of the cupin superfamily protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os02g0621600 Os02g0621600 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os02g0637700 Os02g0637700 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Zinc-containing alcohol dehydrogenase superfamily protein dehydrogenase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) -RAP-DB Os02g0638900 Os02g0638900 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller domain containing protein WD-40 repeat family protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) +RAP-DB Os02g0638900 OsWD40-47 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Similar to Signal transducer gene taxon:39947 20121019 POC:Pankaj_Jaiswal|PO:cooperl participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os02g0640400 Os02g0640400 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os02g0644900 Os02g0644900 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Sodium/potassium/calcium exchanger 4 precursor (Na(+)/K(+)/Ca(2+)- exchange protein 4) Splice isoform 2 sodium/calcium exchanger 1 precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os02g0648900 Os02g0648900 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) @@ -25950,7 +25950,7 @@ RAP-DB Os04g0283700 Os04g0283700 PO:0009072 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os04g0286600 Os04g0286600 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein of unknown function DUF635 family protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) RAP-DB Os04g0289800 Os04g0289800 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Zn-finger, RING domain containing protein zinc finger, C3HC4 type domain containing protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) RAP-DB Os04g0348800 Os04g0348800 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Response regulator receiver domain containing protein two-component response regulator, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) -RAP-DB Os04g0352400 Os04g0352400 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Immunophilin FK506 binding protein FKBP12 peptidyl-prolyl isomerase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) +RAP-DB Os04g0352400 OsFKBP65 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A FK506 binding protein 65 gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) RAP-DB Os04g0364300 Os04g0364300 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) RAP-DB Os04g0381500 Os04g0381500 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Hypothetical protein DEFL49 - Defensin and Defensin-like DEFL family, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) RAP-DB Os04g0412300 Os04g0412300 PO:0009072 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Glycoside hydrolase, family 17 protein glycosyl hydrolases family 17, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007042) @@ -27122,7 +27122,7 @@ RAP-DB Os01g0557400 Os01g0557400 PO:0009066 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os01g0565600 Os01g0565600 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Eukaryotic protein of unknown function DUF866 family protein GA18326-PA, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os01g0588500 Os01g0588500 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase APK1A (EC 271-) tyrosine protein kinase domain containing protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os01g0595800 Os01g0595800 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Cyclin-like F-box domain containing protein OsFBD2 - F-box and FBD domain containing protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) -RAP-DB Os01g0602800 Os01g0602800 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase domain containing protein protein kinase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) +RAP-DB Os01g0602800 OsRLCK42 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Receptor-like Cytoplasmic Kinase 42 gene taxon:39947 20121019 POC:Pankaj_Jaiswal|PO:cooperl participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os01g0608000 Os01g0608000 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase domain containing protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os01g0611100 Os01g0611100 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A GTP-binding nuclear protein RAN1B (Fragment) ras-related protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) RAP-DB Os01g0617600 Os01g0617600 PO:0009066 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Plant specific of unknown function DUF860 family protein amino acid transporter, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001004)|participates_in(PO:0007130) @@ -28149,7 +28149,7 @@ RAP-DB Os01g0947000 Os01g0947000 PO:0009005 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os01g0947700 Os01g0947700 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Beta-1,3-glucanase glycosyl hydrolases family 17 protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os01g0949800 Os01g0949800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Glutathione S-transferase GST 28 (EC 25118) (Fragment) glutathione S-transferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os01g0949900 Os01g0949900 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A GST7 protein (EC 25118) glutathione S-transferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) -RAP-DB Os01g0950000 Os01g0950000 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Glutathione S-transferase, C-terminal domain containing protein glutathione S-transferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) +RAP-DB Os01g0950000 OsGSTU41 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A TAU GLUTATHIONE S-TRANSFERASE 41 gene taxon:39947 20121019 POC:Pankaj_JaiswalPO:cooperl participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os01g0957600 Os01g0957600 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Elicitor-inducible cytochrome P450 cytochrome P450, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os01g0958500 Os01g0958500 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A RNA binding protein-like RNA recognition motif containing protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os01g0962700 Os01g0962700 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peroxidase 12 precursor (EC 11117) (Atperox P12) (PRXR6) (ATP4a) peroxidase precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) @@ -28432,7 +28432,7 @@ RAP-DB Os03g0289800 Os03g0289800 PO:0009005 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os03g0294300 Os03g0294300 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Homeodomain-like containing protein transcription factor like protein, putative gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os03g0298100 Os03g0298100 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os03g0299800 Os03g0299800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Uncharacterized Cys-rich domain containing protein SAG20, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) -RAP-DB Os03g0306100 Os03g0306100 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene glycosyltransferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) +RAP-DB Os03g0306100 OsGT5 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A glycosyltransferase 5 gene taxon:39947 20121019 POC:Pankaj_Jaiswal|PO:cooperl participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os03g0307200 Os03g0307200 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Nicotianamine synthase 1 (EC 25143) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (HvNAS1) nicotianamine synthase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os03g0317300 Os03g0317300 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase A1, pepsin family protein aspartic proteinase nepenthesin precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os03g0318400 Os03g0318400 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase A1, pepsin family protein aspartic proteinase nepenthesin-1 precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) @@ -28879,7 +28879,7 @@ RAP-DB Os05g0587300 Os05g0587300 PO:0009005 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os05g0594200 Os05g0594200 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Calcium/proton exchanger superfamily protein sodium/calcium exchanger protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os05g0596500 Os05g0596500 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Zn-finger, RING domain containing protein zinc finger, C3HC4 type domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0104900 Os06g0104900 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A L-lactate dehydrogenase B (EC 11127) (LDH-B) (Fragment) lactate/malate dehydrogenase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) -RAP-DB Os06g0107800 Os06g0107800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A RAV-like protein hypothetical protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) +RAP-DB Os06g0107800 Bph29 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A BROWN PLANTHOPPER RESISTANCE 29 gene taxon:39947 20121019 POC:Pankaj_JaiswalPO:cooperl participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0108500 Os06g0108500 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene MADS-box transcription factor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0111500 Os06g0111500 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Cytosolic 6-phosphogluconate dehydrogenase 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os06g0112100 Os06g0112100 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein bark storage protein A precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) @@ -29142,7 +29142,7 @@ RAP-DB Os07g0527000 Os07g0527000 PO:0009005 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os07g0527900 Os07g0527900 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein lipase class 3 family protein, putative gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os07g0531200 Os07g0531200 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os07g0532800 Os07g0532800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase A1, pepsin family protein aspartic proteinase nepenthesin, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) -RAP-DB Os07g0533800 Os07g0533800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase A1, pepsin family protein aspartic proteinase nepenthesin-1 precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) +RAP-DB Os07g0533800 Os07g0533800 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase A1, pepsin family protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal|cooperl participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os07g0534700 Os07g0534700 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase family protein TKL_IRAK_DUF26-la gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os07g0537200 Os07g0537200 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Serine/threonine protein kinase family protein TKL_IRAK_DUF26-lc gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) RAP-DB Os07g0537300 Os07g0537300 PO:0009005 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein of unknown function DUF26 domain containing protein TKL_IRAK_DUF26-lc gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007134)|participates_in(PO:0007130) diff --git a/po-associations/po_gene_Oryza_Zhang_2021.assoc b/po-associations/po_gene_Oryza_Zhang_2021.assoc index 14d1425..41f619b 100644 --- a/po-associations/po_gene_Oryza_Zhang_2021.assoc +++ b/po-associations/po_gene_Oryza_Zhang_2021.assoc @@ -322,7 +322,7 @@ RAP-DB Os09g0400700 Os09g0400700 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP RAP-DB Os02g0771800 Os02g0771800 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A Similar to predicted protein gene NCBITaxon:39947 20240909 PO:cooperl RAP-DB Os05g0472400 OsZIP9 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A zinc transporter 9 gene NCBITaxon:39947 20240909 PO:cooperl RAP-DB Os12g0111500 OsBTB9 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A BTB-type E3 ubiquitin ligase 9 gene NCBITaxon:39947 20240909 PO:cooperl -RAP-DB Os07g0533800 Os07g0533800 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A Peptidase A1 domain containing protein. gene NCBITaxon:39947 20240909 PO:cooperl +RAP-DB Os07g0533800 Os07g0533800 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A Peptidase A1 domain containing protein gene NCBITaxon:39947 20240909 PO:cooperl RAP-DB Os06g0147600 Os06g0147600 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A Conserved hypothetical protein gene NCBITaxon:39947 20240909 PO:cooperl RAP-DB Os04g0691400 PTR PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A peptide transporter gene NCBITaxon:39947 20240909 PO:cooperl RAP-DB Os01g0541900 OsPP2C04 PO:0000263 DOI:10.1038/s41467-021-22352-4 HEP A protein phosphatase 2C04 PP2C04|OsPP2C4|PP2C4|OsPP8 gene NCBITaxon:39947 20240909 PO:cooperl @@ -404,7 +404,7 @@ RAP-DB Os01g0835500 OsrbohE PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A Re RAP-DB Os02g0832000 OsCPK6 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A calcium-dependent protein kinase 6 OsCDPK6 gene NCBITaxon:39947 20240920 PO:cooperl RAP-DB Os01g0674800 Os01g0674800 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A Serine/threonine-specific protein kinase NPK15-like gene NCBITaxon:39947 20240920 PO:cooperl RAP-DB Os01g0937050 OsCLP PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A chitinase-like protein gene NCBITaxon:39947 20240920 PO:cooperl -RAP-DB Os03g0306100 OsGT5 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A Galactosyl transferase family protein gene NCBITaxon:39947 20240920 PO:cooperl +RAP-DB Os03g0306100 OsGT5 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A glycosyltransferase 5 gene NCBITaxon:39947 20240920 PO:cooperl RAP-DB Os01g0126100 OsLPR1 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A Multicopper oxidase gene NCBITaxon:39947 20240920 PO:cooperl RAP-DB Os10g0531900 OsbZIP78 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A Similar to BZIP-like protein gene NCBITaxon:39947 20240920 PO:cooperl RAP-DB Os03g0398250 OsRING369 PO:0000262 DOI:10.1038/s41467-021-22352-4 HEP A RING-type E3 ubiquitin ligase 369 gene NCBITaxon:39947 20240920 PO:cooperl