From: rajar <rajar@localhost>
Date: Wed, 2 Nov 2011 21:33:03 +0000 (+0000)
Subject: Script to run TMHMM application
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=ea9909aedda5aa088424828c6b684d14e41e708d;p=old-jaiswallab-svn%2F.git

Script to run TMHMM application

svn path=/; revision=207
---

diff --git a/interpro/RUN_TMHMM.pl b/interpro/RUN_TMHMM.pl
index d11cf91..465999b 100644
--- a/interpro/RUN_TMHMM.pl
+++ b/interpro/RUN_TMHMM.pl
@@ -54,13 +54,13 @@ open(in_file,$file);
             {
                 # print $key."\n".$value."\n";
 
-                open(FILE1,">species_tmhmm.seq") || die("Cannot Open File");
+                open(FILE1,">species.seq") || die("Cannot Open File");
                 print FILE1 "$key\n";
                 print FILE1 "$value";
 
-                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species_tmhmm.seq >> species_tmhmmdata.txt");
+                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species.seq >> species_tmhmmdata.txt");
 
 
-           }
+            }