From: elserj <elserj@localhost>
Date: Thu, 1 Dec 2016 03:53:32 +0000 (+0000)
Subject: Fix a couple of typos
X-Git-Url: http://gitweb.planteome.org/?a=commitdiff_plain;h=f9113527feafadcc894f6fef683b9fa7123a63a8;p=old-jaiswallab-svn%2F.git

Fix a couple of typos

svn path=/; revision=649
---

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 097079e..98c0e30 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -88,7 +88,7 @@ sub find_species {
 		$species = "Elaphocordyceps_paradoxa";
 	}elsif ($temp =~ /Epichloe_festucae/) {
 		$species = "Epichloe\_festucae";
-	}elsif ($temp = /Erinaceus_europaeus/) {
+	}elsif ($temp =~ /Erinaceus_europaeus/) {
 		$species = "Erinaceus_europaeus";
 	}elsif ($temp =~ /Escherichia\_coli/) {
 		$species = "Escherichia_coli";
@@ -144,8 +144,8 @@ sub find_species {
 		$species = "Mus_musculus";
 	}elsif ($temp =~ /Musa/) {
 		$species = "Musa_acuminata";
-	}elsif ($temp =~ /Mustela_putorious.furo/) {
-		$species = "Mustela_putorious.furo";
+	}elsif ($temp =~ /Mustela_putorius\.furo/) {
+		$species = "Mustela_putorius.furo";
 	}elsif ($temp =~ /Nectria\_haematococca/) {
 		$species = "Nectria_haematococca";
 	}elsif ($temp =~ /Nelumbo/) {
@@ -358,7 +358,7 @@ sub find_gene {
 		my ($gene_info,$type,$gc,$gene_length) = split(/\s/, $gene_header);
 		my ($gene_number,$gene_id) = split(/::/, $gene_info);
 		my ($trinity_id, $m_number) = split(/\|/, $gene_id);
-		$gene = $trinity_id; #???
+		$gene = $gene_number; #???
 	}elsif ($species eq "Cavia_porcellus") {
 		my ($isoform, $type, $scaffold, $temp_gene, $transcript, $gene_biotype, $transcript_biotype, $gene_symbol, $description) = split(/\s/, $gene_header);
 		$gene = $isoform;