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zeamary [Mon, 19 Sep 2011 21:14:15 +0000 (21:14 +0000)]
Kaeppler Gene Atlas Temporal associations
svn path=/; revision=201
pankaj [Fri, 16 Sep 2011 18:48:51 +0000 (18:48 +0000)]
replaced ASPECT column value 'S' with 'A' to be consistent
svn path=/; revision=200
zeamary [Thu, 15 Sep 2011 22:48:21 +0000 (22:48 +0000)]
Extra copy slipped in by accident.
svn path=/; revision=199
zeamary [Thu, 15 Sep 2011 22:40:30 +0000 (22:40 +0000)]
This concatenates previous file for silks only with all Kaeppler Gene Atlas annotations. I pulled the older files out and just did an upload. The SVN was unhappy with the amount of memory allocated on my side it seems.
svn path=/; revision=198
zeamary [Thu, 15 Sep 2011 22:28:10 +0000 (22:28 +0000)]
Removing small file concatenated to new one. Not enough memory to do versioning - or so it claims.
svn path=/; revision=197
zeamary [Thu, 15 Sep 2011 22:17:10 +0000 (22:17 +0000)]
Adding concatenated previous file and new.
svn path=/; revision=196
zeamary [Thu, 15 Sep 2011 20:56:32 +0000 (20:56 +0000)]
Change file name
svn path=/; revision=195
tair [Tue, 13 Sep 2011 06:22:37 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 13 Sep 2011 06:20:12 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 6 Sep 2011 06:24:44 +0000 (06:24 +0000)]
TAIR weekly commit
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tair [Tue, 6 Sep 2011 06:21:32 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 30 Aug 2011 06:25:45 +0000 (06:25 +0000)]
TAIR weekly commit
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tair [Tue, 30 Aug 2011 06:22:29 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=189
cooperl [Thu, 25 Aug 2011 22:33:17 +0000 (22:33 +0000)]
fixed the columns in Maize association file
svn path=/; revision=188
pankaj [Wed, 24 Aug 2011 18:41:00 +0000 (18:41 +0000)]
fixed 'S' in caps for aspect.
svn path=/; revision=187
pankaj [Wed, 24 Aug 2011 18:39:36 +0000 (18:39 +0000)]
Includes root and fruit specific mRNA expression data and the annotated growth stages using PO (data published in PMID:
21186353 (genome paper)).
svn path=/; revision=186
pankaj [Tue, 23 Aug 2011 19:20:43 +0000 (19:20 +0000)]
Includes root and fruit specific mRNA expression data published in PMID:
21186353 (genome paper).
svn path=/; revision=185
tair [Tue, 23 Aug 2011 06:22:40 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=184
tair [Tue, 23 Aug 2011 06:20:23 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 16 Aug 2011 06:22:24 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 16 Aug 2011 06:20:18 +0000 (06:20 +0000)]
TAIR weekly commit
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zeamary [Thu, 11 Aug 2011 19:38:32 +0000 (19:38 +0000)]
Kaeppler Maize Atlas - only associations to the term silk, with the column 16 used.
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tair [Tue, 9 Aug 2011 06:22:28 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 9 Aug 2011 06:20:21 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 2 Aug 2011 06:22:44 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 2 Aug 2011 06:20:29 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 26 Jul 2011 06:22:32 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 26 Jul 2011 06:20:18 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Jul 2011 06:24:06 +0000 (06:24 +0000)]
TAIR weekly commit
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tair [Tue, 19 Jul 2011 06:21:26 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 12 Jul 2011 17:54:37 +0000 (17:54 +0000)]
TAIR weekly commit
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tair [Tue, 12 Jul 2011 17:52:14 +0000 (17:52 +0000)]
TAIR weekly commit
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elserj [Fri, 27 May 2011 14:44:24 +0000 (14:44 +0000)]
Added physco assoc file
svn path=/; revision=169
elserj [Wed, 25 May 2011 01:08:22 +0000 (01:08 +0000)]
Oops, was a bit overzealous with the tab removal
svn path=/; revision=168
elserj [Wed, 25 May 2011 00:52:50 +0000 (00:52 +0000)]
Think I correctly fixed the extra tabs this time.
svn path=/; revision=167
elserj [Wed, 25 May 2011 00:29:10 +0000 (00:29 +0000)]
Reverse previous commit, columns were fixed, but extra quotes were accidentally added.
svn path=/; revision=166
elserj [Wed, 25 May 2011 00:09:27 +0000 (00:09 +0000)]
Fix extra tabs in file
svn path=/; revision=165
cooperl [Fri, 20 May 2011 21:13:30 +0000 (21:13 +0000)]
Copied 5 annotations from the po_anatomy_gene_arabidopsis_tair.assoc
file on seedling PO:
0008037 to this file and replaced the obsolete term
with seedling growth stage PO:
0007131.
svn path=/; revision=164
cooperl [Fri, 20 May 2011 19:06:43 +0000 (19:06 +0000)]
Updated the TAIR anatomy and temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=163
cooperl [Thu, 19 May 2011 23:31:56 +0000 (23:31 +0000)]
Updated the MaizeGDB, and TAIR temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=162
cooperl [Wed, 18 May 2011 18:52:23 +0000 (18:52 +0000)]
Updated the TAIR association files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=161
cooperl [Wed, 18 May 2011 18:49:03 +0000 (18:49 +0000)]
Updated the MaizeGDB, Gramene and SGN files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=160
tair [Tue, 17 May 2011 06:22:21 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 17 May 2011 06:20:23 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 10 May 2011 06:22:35 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 10 May 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 3 May 2011 06:22:38 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 3 May 2011 06:20:14 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 26 Apr 2011 06:22:27 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 26 Apr 2011 06:20:09 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Apr 2011 06:23:22 +0000 (06:23 +0000)]
TAIR weekly commit
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tair [Tue, 19 Apr 2011 06:21:08 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 12 Apr 2011 06:22:21 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 12 Apr 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 5 Apr 2011 06:23:01 +0000 (06:23 +0000)]
TAIR weekly commit
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tair [Tue, 5 Apr 2011 06:20:20 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 29 Mar 2011 06:22:38 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 29 Mar 2011 06:20:35 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 22 Mar 2011 06:21:40 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 22 Mar 2011 06:19:43 +0000 (06:19 +0000)]
TAIR weekly commit
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tair [Tue, 15 Mar 2011 06:21:49 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 15 Mar 2011 06:19:46 +0000 (06:19 +0000)]
TAIR weekly commit
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tair [Tue, 8 Mar 2011 07:22:31 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 8 Mar 2011 07:20:14 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 1 Mar 2011 07:22:37 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 1 Mar 2011 07:20:41 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 22 Feb 2011 07:22:05 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 22 Feb 2011 07:20:02 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 15 Feb 2011 07:24:32 +0000 (07:24 +0000)]
TAIR weekly commit
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tair [Tue, 15 Feb 2011 07:21:21 +0000 (07:21 +0000)]
TAIR weekly commit
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tair [Tue, 8 Feb 2011 07:22:34 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 8 Feb 2011 07:20:11 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 1 Feb 2011 07:22:45 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 1 Feb 2011 07:20:14 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 25 Jan 2011 07:22:35 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 25 Jan 2011 07:20:21 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 18 Jan 2011 07:26:19 +0000 (07:26 +0000)]
TAIR weekly commit
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tair [Tue, 18 Jan 2011 07:24:13 +0000 (07:24 +0000)]
TAIR weekly commit
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tair [Thu, 13 Jan 2011 22:27:19 +0000 (22:27 +0000)]
TAIR weekly commit
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tair [Thu, 13 Jan 2011 22:10:03 +0000 (22:10 +0000)]
TAIR weekly commit
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cooperl [Thu, 13 Jan 2011 04:51:54 +0000 (04:51 +0000)]
S. tuberosum
- 1 annotation moved from pollen tube (PO:
0006345)to new term pollen
tube cell (PO:
0025195)
svn path=/; revision=121
cooperl [Thu, 13 Jan 2011 04:41:24 +0000 (04:41 +0000)]
Changes to gramene gene association file 1-12-11
- 1 annotation moved from pollen tube (PO:
0006345)to nwe term pollen
tube cell (PO:
0025195)
- 1 annotation moved from primary root elongation zone (PO:
0003003)to
primary root elongation zone (PO:
0025257) (new PO id)
- 1 annotation moved from root hair (PO:
0000256) to root hair cell
(PO:
0000256) (same PO id)
- 1 annotation moved from elongation zone (PO:
0020125) to new term root
elongation zone (PO:
0025181)
svn path=/; revision=120
tair [Wed, 12 Jan 2011 22:46:46 +0000 (22:46 +0000)]
TAIR weekly commit
svn path=/; revision=119
tair [Wed, 12 Jan 2011 22:29:45 +0000 (22:29 +0000)]
TAIR weekly commit
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tair [Tue, 11 Jan 2011 07:23:36 +0000 (07:23 +0000)]
TAIR weekly commit
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tair [Tue, 11 Jan 2011 07:21:27 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=116
elserj [Tue, 2 Nov 2010 22:34:26 +0000 (22:34 +0000)]
Fix random line breaks
svn path=/; revision=115
elserj [Tue, 2 Nov 2010 22:26:20 +0000 (22:26 +0000)]
Fix random line breaks
svn path=/; revision=114
elserj [Tue, 2 Nov 2010 22:04:31 +0000 (22:04 +0000)]
Fix typo in taxon id
svn path=/; revision=113
elserj [Tue, 2 Nov 2010 22:00:59 +0000 (22:00 +0000)]
Fix line break problems
svn path=/; revision=112
elserj [Tue, 2 Nov 2010 21:56:07 +0000 (21:56 +0000)]
Fix line break problems
svn path=/; revision=111
cooperl [Wed, 6 Oct 2010 20:31:34 +0000 (20:31 +0000)]
101 annotations to SDLGVIG from'po_anatomy_qtl_oryza_gramene.assoc' copied to
po_growth_qtl_oryza_gramene.assoc and assigned to sporophytic growth
phase (PO:
0028002)
svn path=/; revision=110
nm249 [Mon, 4 Oct 2010 15:30:49 +0000 (15:30 +0000)]
updated growth stage sgn associations
svn path=/; revision=109
nm249 [Fri, 1 Oct 2010 19:48:38 +0000 (19:48 +0000)]
removed old files
svn path=/; revision=108
nm249 [Fri, 1 Oct 2010 19:45:31 +0000 (19:45 +0000)]
updated sgn anatomy association files
svn path=/; revision=107
nm249 [Wed, 29 Sep 2010 15:32:18 +0000 (15:32 +0000)]
added current sgn po annotations
svn path=/; revision=106
cooperl [Mon, 27 Sep 2010 21:28:04 +0000 (21:28 +0000)]
Edits to Gramene assoc files 9-27-10
The 15 annotations on PO:
0009003: sporophyte in
'po_anatomy_gene_oryza_gramene.assoc' were moved to PO:
0000003 whole
plant in the PSO.
Plus, the 15 from sporophyte were copied to
'po_growth_gene_oryza_gramene.assoc' and assigned to PO:
0028002
sprophytic stage.
po_anatomy_qtl_oryza_gramene.assoc
-In 'po_anatomy_qtl_oryza_gramene.assoc' moved the SDLVIG annotations
from sporophyte (PO:
0009003) to whole plant (PO:
0000003).
-In 'po_growth_qtl_oryza_gramene.assoc' the seedling vigor QTLs (SDLVIG)
are already assoc with seedling growth (PO:
0007131),
PO:
0009004: gametophyte 1
Source: Gramene
This annotation in 'po_growth_gene_oryza_gramene.assoc' was moved from
gametophyte (PO:
0009004) to male gametophyte (PO:
0020091)
Also, copied to 'po_growth_gene_oryza_gramene.assoc' and associated with
gametophytic phase (PO:
0028003).
Note: It is already associated with the megagametophytic stage
(PO:000721) ( This appears to be an error?) and pollen
developmental stage (PO:
0001007) in the PDGSO.
svn path=/; revision=105
cooperl [Tue, 21 Sep 2010 22:51:42 +0000 (22:51 +0000)]
Edits to 'po_anatomy_gene_arabidopsis_tair.assoc'
-PO:
0008034 leaf whorl replaced with PO:
0025022 collective leaf
structure (15,786)
-PO:
0008037 seedling replaced with PO:
0000003 whole plant (53)
-PO:
0009003 sporophyte replaced with PO:
0000003 whole plant (1)
Edits to 'po_temporal_gene_arabidopsis_tair.assoc'
-Added 53 annotations from PO:
0008037 seedling now on PO:
0007131
seedling growth stage
-Added 1 annotation from PO:
0009003 sporophyte now on PO:
0000003
sporophytic growth phase
Edits done by L. Cooper 9-21-10
svn path=/; revision=104
cooperl [Tue, 21 Sep 2010 17:52:19 +0000 (17:52 +0000)]
Edits to 'po_anatomy_gene_arabidopsis_tair.assoc' by L. Cooper
-Obsoleted term PO:
0008034 leaf whorl replaced with PO:
0025022 collective leaf
structure (15,786)
-Obsoleted term PO:
0008037 seedling replaced with PO:
0000003 whole plant (53)
-Obsoleted term PO:
0009003 sporophyte replaced with PO:
0000003 whole plant (1)
-saved as CSV txt file
svn path=/; revision=103
cooperl [Tue, 21 Sep 2010 17:15:55 +0000 (17:15 +0000)]
Updated files from TAIR
-This line, and those below, will be ignored--
M associations/po_temporal_gene_arabidopsis_tair.assoc
M associations/po_anatomy_gene_arabidopsis_tair.assoc
svn path=/; revision=102
projects / associations / .git / log