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associations/.git
7 months agoMoved annotations from pollen sterility (TO:0000053) to TO:0000437 male sterility
cooperl09 [Fri, 15 Aug 2025 20:57:27 +0000 (13:57 -0700)]
Moved annotations from pollen sterility (TO:0000053) to TO:0000437 male sterility

7 months agoMoved annotations, fixed duplicated synonyms and refs
cooperl09 [Fri, 15 Aug 2025 20:49:07 +0000 (13:49 -0700)]
Moved annotations, fixed duplicated synonyms and refs

7 months agoMoved two annotations to TO:0000036
Laurel Cooper [Thu, 14 Aug 2025 23:04:10 +0000 (16:04 -0700)]
Moved two annotations to TO:0000036

7 months agoAdding curator xref
Laurel Cooper [Thu, 14 Aug 2025 22:58:58 +0000 (15:58 -0700)]
Adding curator xref

7 months agoRemoved a few more duplicated synonyms
Laurel Cooper [Thu, 14 Aug 2025 22:53:45 +0000 (15:53 -0700)]
Removed a few more duplicated synonyms

7 months agoRemoved duplicated synonyms
Laurel Cooper [Thu, 14 Aug 2025 22:51:07 +0000 (15:51 -0700)]
Removed duplicated synonyms

7 months agoMoved annotations from TO:0000042 to parent term TO:0000035 incompatibility trait
Laurel Cooper [Thu, 14 Aug 2025 22:30:11 +0000 (15:30 -0700)]
Moved annotations from TO:0000042 to parent term TO:0000035 incompatibility trait

7 months agoMoved annotations from TO:0000036 and TO:0000046 to parent term TO:0000035 hybrid...
Laurel Cooper [Thu, 14 Aug 2025 22:25:50 +0000 (15:25 -0700)]
Moved annotations from TO:0000036 and TO:0000046 to  parent term TO:0000035  hybrid incompatibility

7 months agoFixed typo
Laurel Cooper [Thu, 14 Aug 2025 20:37:18 +0000 (13:37 -0700)]
Fixed typo

7 months agoMoved 1 annotation to grain quality TO:0000162
cooperl09 [Tue, 12 Aug 2025 23:00:31 +0000 (16:00 -0700)]
Moved 1 annotation to grain quality  TO:0000162

7 months agoRemoved annotation to incorrect term
cooperl09 [Mon, 11 Aug 2025 22:41:17 +0000 (15:41 -0700)]
Removed annotation to incorrect term

7 months agoFilled in ref column
cooperl09 [Fri, 8 Aug 2025 16:59:43 +0000 (09:59 -0700)]
Filled in ref column

7 months agoAdded missing line return
cooperl09 [Wed, 6 Aug 2025 17:03:45 +0000 (10:03 -0700)]
Added missing line return

7 months agoAdding new file for Triticeae QTLs
cooperl09 [Tue, 5 Aug 2025 23:14:15 +0000 (16:14 -0700)]
Adding new file for Triticeae QTLs

7 months agoFixing filename
cooperl09 [Tue, 5 Aug 2025 23:08:42 +0000 (16:08 -0700)]
Fixing filename

7 months agoFixed database name
cooperl09 [Tue, 5 Aug 2025 20:29:40 +0000 (13:29 -0700)]
Fixed database name

7 months agoAdding new file of oat QTLs from GrainGenes
cooperl09 [Tue, 5 Aug 2025 19:11:23 +0000 (12:11 -0700)]
Adding new file of oat QTLs from GrainGenes

7 months agoMoved 3 QTLs to TO:0000631
cooperl09 [Fri, 1 Aug 2025 22:42:52 +0000 (15:42 -0700)]
Moved 3 QTLs to TO:0000631

7 months agoRemoved 4 duplicated lines
Laurel Cooper [Thu, 31 Jul 2025 22:15:37 +0000 (15:15 -0700)]
Removed 4 duplicated lines

7 months agoAdding more barley QTLs, fixing annotations
cooperl09 [Thu, 31 Jul 2025 19:01:26 +0000 (12:01 -0700)]
Adding more barley QTLs, fixing annotations

7 months agoAdded line return at the end
cooperl09 [Wed, 30 Jul 2025 23:10:49 +0000 (16:10 -0700)]
Added line return at the end

7 months agoAdding more annotations
cooperl09 [Wed, 30 Jul 2025 22:10:15 +0000 (15:10 -0700)]
Adding more annotations

7 months agoFixed typo
cooperl09 [Wed, 30 Jul 2025 19:16:39 +0000 (12:16 -0700)]
Fixed typo

7 months agoAdding test file of GrainGenes QTLs
cooperl09 [Wed, 30 Jul 2025 19:05:51 +0000 (12:05 -0700)]
Adding test file of GrainGenes QTLs

7 months agoChange all obsoleted GO terms with known replacements
Justin Elser [Tue, 29 Jul 2025 23:02:11 +0000 (16:02 -0700)]
Change all obsoleted GO terms with known replacements

7 months agoUpdated annotations to insect responses
cooperl09 [Mon, 28 Jul 2025 22:00:55 +0000 (15:00 -0700)]
Updated annotations to insect responses

7 months agoReplaced 1 TO term, removed by mistake
cooperl09 [Mon, 28 Jul 2025 21:40:50 +0000 (14:40 -0700)]
Replaced 1 TO term, removed by mistake

7 months agoUpdated annotations to insect traits
cooperl09 [Mon, 28 Jul 2025 21:34:37 +0000 (14:34 -0700)]
Updated annotations to insect traits

7 months agoRemove extra tab
Justin Elser [Mon, 28 Jul 2025 20:23:19 +0000 (13:23 -0700)]
Remove extra tab

7 months agoRemoved redundant annotation to parent term
cooperl09 [Mon, 28 Jul 2025 16:46:01 +0000 (09:46 -0700)]
Removed redundant annotation to parent term

7 months agoRemoved 10 annotated QTL as we have no evidence to support them
cooperl09 [Fri, 25 Jul 2025 22:44:07 +0000 (15:44 -0700)]
Removed 10 annotated QTL as we have no evidence to support them

8 months agoMoved IRRI germplasm files to a new folder
Laurel Cooper [Thu, 17 Jul 2025 20:18:21 +0000 (14:18 -0600)]
Moved IRRI germplasm files to a new folder

8 months agoMoved 1 annotation to vivpary TO:0000619 from seed dormancy
Laurel Cooper [Mon, 14 Jul 2025 22:11:27 +0000 (16:11 -0600)]
Moved 1 annotation to vivpary TO:0000619 from seed dormancy

8 months agoMoved 11 annotations from seed dormancy TO:0000253 to New term- grain dormancy TO...
Laurel Cooper [Mon, 14 Jul 2025 22:08:56 +0000 (16:08 -0600)]
Moved 11 annotations from seed dormancy TO:0000253 to New term- grain dormancy TO:0001159

8 months agoMoved annotations to vivpary TO:0000619 from seed dormancy
Laurel Cooper [Mon, 14 Jul 2025 22:05:11 +0000 (16:05 -0600)]
Moved annotations to vivpary TO:0000619 from seed dormancy

8 months agoMoved 11 annotations from seed dormancy TO:0000253 to New term- grain dormancy TO...
Laurel Cooper [Mon, 14 Jul 2025 21:55:09 +0000 (15:55 -0600)]
Moved 11 annotations from seed dormancy TO:0000253 to New term- grain dormancy TO:0001159

8 months agoMoved 164 rice QTLs from seed dormancy to grain dormancy TO:0001159
Laurel Cooper [Mon, 14 Jul 2025 21:35:58 +0000 (15:35 -0600)]
Moved 164 rice QTLs from seed dormancy to grain dormancy TO:0001159

8 months agoMoved ND gene to tillering TO:0000329
Laurel Cooper [Mon, 14 Jul 2025 20:10:56 +0000 (14:10 -0600)]
Moved ND gene to tillering TO:0000329

8 months agoMoved annotations to new shoot axis length term TO:0001158 and TO:0000634 node #
cooperl09 [Wed, 9 Jul 2025 18:21:45 +0000 (11:21 -0700)]
Moved annotations to new shoot axis length term TO:0001158 and TO:0000634 node #

8 months agoMoved 2 QTLs to grain moisture TO:0000057
cooperl09 [Tue, 8 Jul 2025 15:40:56 +0000 (08:40 -0700)]
Moved 2 QTLs to grain moisture TO:0000057

8 months agoFixed annotations, removed duplicated synonyms
Laurel Cooper [Wed, 2 Jul 2025 22:41:53 +0000 (15:41 -0700)]
Fixed annotations, removed duplicated synonyms

9 months agoSorted by accession #
Laurel Cooper [Mon, 2 Jun 2025 19:00:12 +0000 (12:00 -0700)]
Sorted by accession #

9 months agoAdded header line
Laurel Cooper [Mon, 2 Jun 2025 18:17:08 +0000 (11:17 -0700)]
Added header line

No duplicates

9 months agoAdded header line
Laurel Cooper [Mon, 2 Jun 2025 17:57:49 +0000 (10:57 -0700)]
Added header line

No duplicates

9 months agoAdded header line
Laurel Cooper [Mon, 2 Jun 2025 17:54:21 +0000 (10:54 -0700)]
Added header line

No Duplicates

9 months agoAdded header line
Laurel Cooper [Mon, 2 Jun 2025 17:50:54 +0000 (10:50 -0700)]
Added header line

No duplicates

9 months agoAdded header line
Laurel Cooper [Mon, 2 Jun 2025 17:47:52 +0000 (10:47 -0700)]
Added header line

No duplicates

9 months agoAdded column headings line
cooperl09 [Fri, 30 May 2025 22:34:53 +0000 (15:34 -0700)]
Added column headings line

9 months agoRemoved 23,490 duplicated lines
cooperl09 [Thu, 29 May 2025 22:27:56 +0000 (15:27 -0700)]
Removed 23,490 duplicated lines

9 months agoFixed reference
cooperl09 [Sun, 25 May 2025 16:41:09 +0000 (09:41 -0700)]
Fixed reference

9 months agoFixed evidence code
cooperl09 [Sat, 24 May 2025 18:10:12 +0000 (11:10 -0700)]
Fixed evidence code

9 months agoReplaced IAGP with EXP evidence code
Laurel Cooper [Fri, 23 May 2025 18:45:51 +0000 (11:45 -0700)]
Replaced IAGP with EXP evidence code

9 months agoReplaced IAGP evidence code with EXP
Laurel Cooper [Fri, 23 May 2025 18:42:17 +0000 (11:42 -0700)]
Replaced IAGP evidence code with EXP

10 months agoMoved 7 qtl annotations to TO:0000604
Laurel Cooper [Fri, 9 May 2025 22:45:08 +0000 (15:45 -0700)]
Moved 7 qtl annotations to TO:0000604

10 months agoMoved 11 annotations from TO:0000488 seed composition quality trait
Laurel Cooper [Thu, 8 May 2025 21:51:15 +0000 (14:51 -0700)]
Moved 11 annotations from TO:0000488 seed composition quality trait

10 months agoFixed annotation on WD! gene to TO:0000604, which is a child of metabolite content...
cooperl09 [Thu, 8 May 2025 18:55:58 +0000 (11:55 -0700)]
Fixed annotation on WD! gene to TO:0000604, which is a child of metabolite content trait

10 months agoChange OB_Gene to Oryzabase to match dbxrefs.yaml
Justin Elser [Wed, 7 May 2025 14:14:15 +0000 (07:14 -0700)]
Change OB_Gene to Oryzabase to match dbxrefs.yaml

10 months agoAdded new test file of Oryzabase genes
cooperl09 [Tue, 6 May 2025 19:51:07 +0000 (12:51 -0700)]
Added new test file of Oryzabase genes

10 months agoFixing typo in Oryza gene name
cooperl09 [Mon, 5 May 2025 21:16:43 +0000 (14:16 -0700)]
Fixing typo in Oryza gene name

Error is coming from Gramene page

11 months agoFixed two mappings for maize QTLs
cooperl09 [Fri, 18 Apr 2025 18:52:38 +0000 (11:52 -0700)]
Fixed two mappings for maize QTLs

11 months agoreverting test
cooperl09 [Fri, 21 Mar 2025 22:34:58 +0000 (15:34 -0700)]
reverting test

11 months agotesting
cooperl09 [Fri, 21 Mar 2025 22:34:21 +0000 (15:34 -0700)]
testing

12 months agoreverting test
Laurel Cooper [Thu, 6 Mar 2025 19:09:07 +0000 (11:09 -0800)]
reverting test

12 months agotest
Laurel Cooper [Thu, 6 Mar 2025 19:08:14 +0000 (11:08 -0800)]
test

12 months agoMerge branch 'main' of https://gitlab.cqls.oregonstate.edu/jaiswal-lab/associations
Laurel Cooper [Tue, 4 Mar 2025 22:00:33 +0000 (14:00 -0800)]
Merge branch 'main' of https://gitlab.cqls.oregonstate.edu/jaiswal-lab/associations

12 months agoReverting test
cooperl09 [Tue, 4 Mar 2025 19:44:53 +0000 (11:44 -0800)]
Reverting test

12 months agoTest
cooperl09 [Tue, 4 Mar 2025 19:41:42 +0000 (11:41 -0800)]
Test

12 months agoCreate .gitignore
Laurel Cooper [Mon, 3 Mar 2025 22:12:12 +0000 (14:12 -0800)]
Create .gitignore

13 months agoFixing QTL annotations to TO:0000439
cooperl [Wed, 29 Jan 2025 18:25:17 +0000 (18:25 +0000)]
Fixing QTL annotations to TO:0000439

svn path=/; revision=1137

14 months agoRemoving the test file
cooperl [Tue, 7 Jan 2025 20:22:49 +0000 (20:22 +0000)]
Removing the test file

svn path=/; revision=1136

14 months agoAdding annotations from Parul's test file
cooperl [Tue, 7 Jan 2025 20:22:01 +0000 (20:22 +0000)]
Adding annotations from Parul's test file

svn path=/; revision=1135

15 months agoAdding new test file for Parul
cooperl [Wed, 11 Dec 2024 19:29:27 +0000 (19:29 +0000)]
Adding new test file for Parul

svn path=/; revision=1134

15 months agoRemoving test file for Parul
cooperl [Wed, 11 Dec 2024 19:27:00 +0000 (19:27 +0000)]
Removing test file for Parul

svn path=/; revision=1133

16 months ago Adding missing QTL name and reference DOI
cooperl [Tue, 19 Nov 2024 22:26:27 +0000 (22:26 +0000)]
 Adding missing QTL name and reference DOI

svn path=/; revision=1132

16 months agoAdded annotations to xylem, Clusters 12,16
cooperl [Tue, 19 Nov 2024 18:03:44 +0000 (18:03 +0000)]
Added annotations to xylem, Clusters 12,16

svn path=/; revision=1131

16 months agoAdding a few missing gene names
cooperl [Tue, 19 Nov 2024 17:55:47 +0000 (17:55 +0000)]
Adding a few missing gene names

svn path=/; revision=1130

16 months agoFixed a few gene names
cooperl [Tue, 19 Nov 2024 17:18:33 +0000 (17:18 +0000)]
Fixed a few gene names

svn path=/; revision=1129

16 months agoFixed a few gene names
cooperl [Mon, 18 Nov 2024 18:44:48 +0000 (18:44 +0000)]
Fixed a few gene names
M    po_anatomy_gene_0ryza_poc.assoc

svn path=/; revision=1128

16 months agoFixed a few gene names and missing symbols
cooperl [Mon, 18 Nov 2024 16:32:49 +0000 (16:32 +0000)]
Fixed a few gene names and missing symbols

svn path=/; revision=1127

16 months agoFixed gene name
cooperl [Fri, 15 Nov 2024 18:32:25 +0000 (18:32 +0000)]
Fixed gene name

svn path=/; revision=1126

16 months agoFixed gene name
cooperl [Thu, 14 Nov 2024 19:38:32 +0000 (19:38 +0000)]
Fixed gene name

svn path=/; revision=1125

16 months agoFixed one gene name
cooperl [Thu, 14 Nov 2024 18:08:54 +0000 (18:08 +0000)]
Fixed one gene name

svn path=/; revision=1124

16 months agoFixed gene name
cooperl [Tue, 12 Nov 2024 18:59:40 +0000 (18:59 +0000)]
Fixed gene name

svn path=/; revision=1123

16 months agoFixing gene name
cooperl [Thu, 7 Nov 2024 22:48:14 +0000 (22:48 +0000)]
Fixing gene name

svn path=/; revision=1122

16 months agoRemoving test file
cooperl [Wed, 6 Nov 2024 17:34:42 +0000 (17:34 +0000)]
Removing test file

svn path=/; revision=1121

16 months agoFixed Assigned by and copied annotations from test file to Zhang 2021 file
cooperl [Wed, 6 Nov 2024 17:23:29 +0000 (17:23 +0000)]
Fixed Assigned by and copied annotations from test file to Zhang 2021 file

svn path=/; revision=1120

16 months agoAdding the Cluster 15 annotations
cooperl [Tue, 5 Nov 2024 23:00:38 +0000 (23:00 +0000)]
Adding the Cluster 15 annotations

svn path=/; revision=1119

16 months agoFixed db IDs with "area" appended to them
cooperl [Tue, 5 Nov 2024 22:05:35 +0000 (22:05 +0000)]
Fixed db IDs with "area" appended to them

svn path=/; revision=1118

16 months agoFixing assigned by for 11 annotations
cooperl [Mon, 4 Nov 2024 20:05:26 +0000 (20:05 +0000)]
Fixing assigned by for 11 annotations

svn path=/; revision=1117

16 months agoRemoving file with links to Gramene, replaced by miRBase file
cooperl [Thu, 31 Oct 2024 20:23:29 +0000 (20:23 +0000)]
Removing file with links to Gramene, replaced by miRBase file

svn path=/; revision=1116

16 months agoFixed one ID
cooperl [Thu, 31 Oct 2024 20:15:18 +0000 (20:15 +0000)]
Fixed one ID

svn path=/; revision=1115

16 months agoAdding new file with miRNA annotations linking to miRBase
cooperl [Thu, 31 Oct 2024 20:10:20 +0000 (20:10 +0000)]
Adding new file with miRNA annotations linking to miRBase

svn path=/; revision=1114

16 months agoAdding new file to check
cooperl [Wed, 30 Oct 2024 21:25:57 +0000 (21:25 +0000)]
Adding new file to check

svn path=/; revision=1113

16 months agoAdding back missing column
cooperl [Tue, 29 Oct 2024 17:30:56 +0000 (17:30 +0000)]
Adding back missing column

svn path=/; revision=1112

16 months agoChanged object type from gene to miRNA
cooperl [Mon, 28 Oct 2024 21:28:37 +0000 (21:28 +0000)]
Changed object type from gene to miRNA

svn path=/; revision=1111

16 months agoFixing "Assigned_by" field
cooperl [Wed, 23 Oct 2024 22:13:44 +0000 (22:13 +0000)]
Fixing "Assigned_by" field

svn path=/; revision=1110

16 months ago Fixing "Assigned_by" field
cooperl [Wed, 23 Oct 2024 22:10:42 +0000 (22:10 +0000)]
 Fixing "Assigned_by" field

svn path=/; revision=1109

16 months agoFixed a couple of the MiRNAs
cooperl [Wed, 23 Oct 2024 20:28:13 +0000 (20:28 +0000)]
Fixed a couple of the MiRNAs

svn path=/; revision=1108

16 months agoAdding parul new test file
cooperl [Wed, 23 Oct 2024 17:19:19 +0000 (17:19 +0000)]
Adding parul new test file

svn path=/; revision=1107

16 months agoRemoving the old test file
cooperl [Wed, 23 Oct 2024 16:38:59 +0000 (16:38 +0000)]
Removing the old test file

svn path=/; revision=1106