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cooperl [Wed, 28 Aug 2013 22:20:21 +0000 (22:20 +0000)]
Fixed space in curator name.
svn path=/; revision=488
elserj [Wed, 28 Aug 2013 21:27:17 +0000 (21:27 +0000)]
Had to run mac2unix to fix the mac line breaks. Made the file only have one line until fixed
svn path=/; revision=487
cooperl [Wed, 28 Aug 2013 18:54:47 +0000 (18:54 +0000)]
Fixed suffix for filename
svn path=/; revision=486
cooperl [Wed, 28 Aug 2013 18:50:28 +0000 (18:50 +0000)]
Renaming SoyBase QTL test file.
svn path=/; revision=485
cooperl [Wed, 28 Aug 2013 18:46:57 +0000 (18:46 +0000)]
Removed the new file fix continuity.
svn path=/; revision=484
cooperl [Wed, 28 Aug 2013 18:45:08 +0000 (18:45 +0000)]
SoyBase QTL annotation file was updated- corrected columns and PO Ids to obsolete term: sporophyte (PO:
0009003).
svn path=/; revision=483
cooperl [Wed, 28 Aug 2013 18:35:42 +0000 (18:35 +0000)]
Fixing name
svn path=/; revision=482
cooperl [Wed, 28 Aug 2013 18:34:00 +0000 (18:34 +0000)]
Renaming the test file of SoyBase QTL annotations.
svn path=/; revision=481
elserj [Wed, 21 Aug 2013 21:18:09 +0000 (21:18 +0000)]
Updated to associations files in release #20
svn path=/; revision=480
cooperl [Mon, 12 Aug 2013 18:36:32 +0000 (18:36 +0000)]
Adding new association file for Soybase QTLs for Rex Nelson.
svn path=/; revision=479
elserj [Mon, 29 Jul 2013 05:48:36 +0000 (05:48 +0000)]
Changed obsoleted term PO:
0007617 to PO:
0007616
svn path=/; revision=478
tair [Sat, 27 Jul 2013 20:15:28 +0000 (20:15 +0000)]
TAIR weekly commit
svn path=/; revision=477
tair [Sat, 27 Jul 2013 19:49:36 +0000 (19:49 +0000)]
TAIR weekly commit
svn path=/; revision=476
cooperl [Thu, 25 Jul 2013 23:09:37 +0000 (23:09 +0000)]
emoved extra GR: from the Gramene files.
svn path=/; revision=475
cooperl [Wed, 24 Jul 2013 20:11:55 +0000 (20:11 +0000)]
Removed the working copies of the rice IMP files since it has been moved to the main folder.
svn path=/; revision=474
cooperl [Wed, 24 Jul 2013 19:03:47 +0000 (19:03 +0000)]
Removed some extra spaces in the DB_object_ID
svn path=/; revision=473
cooperl [Wed, 24 Jul 2013 18:58:19 +0000 (18:58 +0000)]
emoved annotations to DSG1 as we do not have a GR:id for those.
Changed assigned by from PO:Laurel_Cooper to POC:Laurel_Cooper
Changed GR to GR_gene as DB in Col #1
Renamed file po_ontology_IMP_gene_oryza_poc.assoc
svn path=/; revision=472
cooperl [Wed, 24 Jul 2013 18:06:40 +0000 (18:06 +0000)]
Renamed cotton transcript anatomy file and moved to main folder.
svn path=/; revision=471
cooperl [Wed, 24 Jul 2013 18:03:43 +0000 (18:03 +0000)]
Renamed cotton transcript anatomy file and moved to main folder.
svn path=/; revision=470
cooperl [Wed, 24 Jul 2013 17:06:25 +0000 (17:06 +0000)]
Changed annotation from seed trichomes (PO:
0004511) to plant protoplasts (PO:
0000006), and fixed DB_Object_name- col#10.
svn path=/; revision=469
cooperl [Wed, 24 Jul 2013 00:25:12 +0000 (00:25 +0000)]
Removed the extra GR: from the Rice_phenos annotation file.
svn path=/; revision=468
elserj [Mon, 22 Jul 2013 23:30:56 +0000 (23:30 +0000)]
Added tsv version of association file
svn path=/; revision=467
cooperl [Mon, 22 Jul 2013 22:34:30 +0000 (22:34 +0000)]
Updated the "assigned _by" and removed colored lines.-
-This line, and those below, will be ignored--
M test_phenos/go_gene_oryza_phenos.assoc.xls
M test_phenos/po_gene_oryza_phenos.assoc.xls
svn path=/; revision=466
tair [Sat, 20 Jul 2013 20:17:12 +0000 (20:17 +0000)]
TAIR weekly commit
svn path=/; revision=465
tair [Sat, 20 Jul 2013 19:52:29 +0000 (19:52 +0000)]
TAIR weekly commit
svn path=/; revision=464
tair [Sat, 13 Jul 2013 20:13:58 +0000 (20:13 +0000)]
TAIR weekly commit
svn path=/; revision=463
tair [Sat, 13 Jul 2013 19:51:19 +0000 (19:51 +0000)]
TAIR weekly commit
svn path=/; revision=462
tair [Sat, 6 Jul 2013 20:38:02 +0000 (20:38 +0000)]
TAIR weekly commit
svn path=/; revision=461
tair [Sat, 6 Jul 2013 20:06:51 +0000 (20:06 +0000)]
TAIR weekly commit
svn path=/; revision=460
tair [Fri, 28 Jun 2013 20:37:17 +0000 (20:37 +0000)]
TAIR weekly update
svn path=/; revision=459
tair [Fri, 28 Jun 2013 20:36:23 +0000 (20:36 +0000)]
TAIR weekly update
svn path=/; revision=458
moorel [Tue, 11 Jun 2013 21:47:21 +0000 (21:47 +0000)]
Added annotations to growth stages for the rice phenotype data set.
svn path=/; revision=457
moorel [Wed, 29 May 2013 19:43:01 +0000 (19:43 +0000)]
changed the gramene ID for DSG1 to be GR:xxxxxxx until we can replace
with a real gramene ID.
svn path=/; revision=456
moorel [Tue, 28 May 2013 21:34:56 +0000 (21:34 +0000)]
Added correct gene names from the gramene site to the PO annotation
file.
svn path=/; revision=455
moorel [Tue, 28 May 2013 18:23:21 +0000 (18:23 +0000)]
Added PubMed IDs for GO annotations and added correct Aspects for GO
annotations. Flagged DSG1 gene lines in green to indicate a problem with
the GR ID.
svn path=/; revision=454
moorel [Thu, 23 May 2013 21:55:48 +0000 (21:55 +0000)]
Added Gramene database IDs for literature unavailable on PubMed.
svn path=/; revision=453
cooperl [Thu, 23 May 2013 21:48:04 +0000 (21:48 +0000)]
Saved the GO file as .xls for editting.
svn path=/; revision=452
moorel [Thu, 23 May 2013 21:33:50 +0000 (21:33 +0000)]
Added all available PMIDs to the PO rice phenotype annotations.
svn path=/; revision=451
moorel [Thu, 23 May 2013 20:30:35 +0000 (20:30 +0000)]
Deleted terms that have already been annotated. Added some PMIDs for the
genes.
svn path=/; revision=450
moorel [Thu, 23 May 2013 20:26:12 +0000 (20:26 +0000)]
Added go annotations and deleted old po annotation text file.
svn path=/; revision=449
cooperl [Thu, 23 May 2013 18:06:45 +0000 (18:06 +0000)]
Saved phenos test file of PO and GO annotations as excel file for now.
svn path=/; revision=448
moorel [Wed, 22 May 2013 21:43:46 +0000 (21:43 +0000)]
Updated rice phenotype annotations for PO and GO anatomy and growth.
svn path=/; revision=447
moorel [Wed, 22 May 2013 21:40:48 +0000 (21:40 +0000)]
Updated list of phenotype annotations to PO and GO for anatomy and
growth.
svn path=/; revision=446
moorel [Wed, 22 May 2013 20:50:44 +0000 (20:50 +0000)]
PO phenotype annotations with both anatomy and growth. Second tab with
GO annotations. File is of rice phenotypes from the plant phenotype
pilot project.
svn path=/; revision=445
cooperl [Wed, 22 May 2013 18:21:00 +0000 (18:21 +0000)]
Made a folder for the test annotations from the Pheno RCN project
-This line, and those below, will be ignored--
A associations/test_phenos
svn path=/; revision=444
cooperl [Thu, 9 May 2013 19:01:53 +0000 (19:01 +0000)]
Added test folder for new soybean annotations
svn path=/; revision=443
tair [Tue, 30 Apr 2013 06:22:59 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=442
tair [Tue, 30 Apr 2013 06:20:44 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=441
pankaj [Wed, 24 Apr 2013 01:02:27 +0000 (01:02 +0000)]
added a zip archive for easy one point download of all associations
svn path=/; revision=440
tair [Tue, 23 Apr 2013 06:22:41 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=439
tair [Tue, 23 Apr 2013 06:20:36 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 16 Apr 2013 06:23:12 +0000 (06:23 +0000)]
TAIR weekly commit
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tair [Tue, 16 Apr 2013 06:21:23 +0000 (06:21 +0000)]
TAIR weekly commit
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hwang [Mon, 15 Apr 2013 15:39:57 +0000 (15:39 +0000)]
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tair [Tue, 9 Apr 2013 06:26:03 +0000 (06:26 +0000)]
TAIR weekly commit
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tair [Tue, 9 Apr 2013 06:22:31 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 2 Apr 2013 06:24:36 +0000 (06:24 +0000)]
TAIR weekly commit
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tair [Tue, 2 Apr 2013 06:21:50 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 26 Mar 2013 06:22:08 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 26 Mar 2013 06:20:16 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Mar 2013 06:20:38 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Mar 2013 06:18:24 +0000 (06:18 +0000)]
TAIR weekly commit
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tair [Tue, 12 Mar 2013 06:19:29 +0000 (06:19 +0000)]
TAIR weekly commit
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tair [Tue, 12 Mar 2013 06:17:38 +0000 (06:17 +0000)]
TAIR weekly commit
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tair [Tue, 5 Mar 2013 07:20:48 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 5 Mar 2013 07:18:39 +0000 (07:18 +0000)]
TAIR weekly commit
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tair [Tue, 26 Feb 2013 07:19:43 +0000 (07:19 +0000)]
TAIR weekly commit
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tair [Tue, 26 Feb 2013 07:17:55 +0000 (07:17 +0000)]
TAIR weekly commit
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tair [Tue, 19 Feb 2013 07:19:44 +0000 (07:19 +0000)]
TAIR weekly commit
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tair [Tue, 19 Feb 2013 07:17:53 +0000 (07:17 +0000)]
TAIR weekly commit
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tair [Tue, 12 Feb 2013 07:19:39 +0000 (07:19 +0000)]
TAIR weekly commit
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tair [Tue, 12 Feb 2013 07:17:46 +0000 (07:17 +0000)]
TAIR weekly commit
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tair [Tue, 5 Feb 2013 07:24:44 +0000 (07:24 +0000)]
TAIR weekly commit
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tair [Tue, 5 Feb 2013 07:22:41 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 29 Jan 2013 07:20:22 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 29 Jan 2013 07:18:31 +0000 (07:18 +0000)]
TAIR weekly commit
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tair [Tue, 15 Jan 2013 07:21:48 +0000 (07:21 +0000)]
TAIR weekly commit
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tair [Tue, 15 Jan 2013 07:19:27 +0000 (07:19 +0000)]
TAIR weekly commit
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tair [Tue, 8 Jan 2013 07:21:24 +0000 (07:21 +0000)]
TAIR weekly commit
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tair [Tue, 8 Jan 2013 07:19:35 +0000 (07:19 +0000)]
TAIR weekly commit
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tair [Tue, 1 Jan 2013 07:18:37 +0000 (07:18 +0000)]
TAIR weekly commit
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cooperl [Wed, 26 Dec 2012 23:11:12 +0000 (23:11 +0000)]
Fixed one error in refs in 'po_anatomy_protein_Gossypium_AgBase.assoc'.
-This line, and those below, will be ignored-
M associations/po_anatomy_protein_Gossypium_AgBase.assoc
svn path=/; revision=407
tair [Tue, 25 Dec 2012 07:20:46 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=406
tair [Tue, 25 Dec 2012 07:18:44 +0000 (07:18 +0000)]
TAIR weekly commit
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cooperl [Mon, 24 Dec 2012 18:32:03 +0000 (18:32 +0000)]
Fixed line returns in po_growth_gene_vitis_poc.assoc.
svn path=/; revision=404
elserj [Sun, 23 Dec 2012 19:35:28 +0000 (19:35 +0000)]
Fixed missing lines in file
svn path=/; revision=403
cooperl [Sun, 23 Dec 2012 12:48:51 +0000 (12:48 +0000)]
Removed duplicated lines from the Vitis assoc files.
svn path=/; revision=402
cooperl [Sat, 22 Dec 2012 21:01:16 +0000 (21:01 +0000)]
Removed duplicate lines from:
associations/po_anatomy_protein_Gossypium_AgBase.assoc
associations/po_growth_protein_Gossypium_AgBase.assoc
svn path=/; revision=401
cooperl [Sat, 22 Dec 2012 19:42:22 +0000 (19:42 +0000)]
Completed last line #6598 of trunk/associations/po_growth_gene_oryza_poc.assoc
Replaced col 16 relation 'participates_in' with 'has_participant'(PO:
0009049).
svn path=/; revision=400
cooperl [Sat, 22 Dec 2012 19:30:42 +0000 (19:30 +0000)]
Fixed last line of po_growth_gene_oryza_poc.assoc, which was truncated.
Removed '.' at the end of the DB_object _name in both po_growth_gene_oryza_poc.assoc
and trunk/associations/po_growth_gene_oryza_poc.assoc. It looked weird on the browser.
svn path=/; revision=399
elserj [Wed, 19 Dec 2012 06:57:21 +0000 (06:57 +0000)]
Fix spaces after colons in taxon and dbxref columns
svn path=/; revision=398
elserj [Wed, 19 Dec 2012 06:49:28 +0000 (06:49 +0000)]
Changed found_in to participates_in, per PJ
svn path=/; revision=397
tair [Tue, 18 Dec 2012 07:25:49 +0000 (07:25 +0000)]
TAIR weekly commit
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tair [Tue, 18 Dec 2012 07:23:44 +0000 (07:23 +0000)]
TAIR weekly commit
svn path=/; revision=395
cooperl [Mon, 17 Dec 2012 20:21:26 +0000 (20:21 +0000)]
Added new Gossypium PO_growth annotations to existing file from AgBase and deleted the duplicate files.
svn path=/; revision=394
cooperl [Mon, 17 Dec 2012 20:07:26 +0000 (20:07 +0000)]
Removed duplicate po_anatomy_Gossypium file.
svn path=/; revision=393
cooperl [Mon, 17 Dec 2012 20:01:42 +0000 (20:01 +0000)]
Added new po-anatomy annotations from AgBase to exisitng file.
svn path=/; revision=392
cooperl [Mon, 17 Dec 2012 19:25:18 +0000 (19:25 +0000)]
Fixed date format and changed aspect from 'S' to 'G' for growth to be consistent.
svn path=/; revision=391
elserj [Mon, 17 Dec 2012 18:53:04 +0000 (18:53 +0000)]
Added the anatomy oryza file for Pankaj
svn path=/; revision=390
cooperl [Mon, 17 Dec 2012 06:24:46 +0000 (06:24 +0000)]
Fixed the line returns to Vitis growth assoc. file.
svn path=/; revision=389
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