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shuly [Mon, 7 Apr 2008 22:23:41 +0000 (22:23 +0000)]
changed phenotype to germplasm
svn path=/; revision=71
shuly [Wed, 2 Apr 2008 22:24:32 +0000 (22:24 +0000)]
SGN annotations
svn path=/; revision=70
donghui [Wed, 19 Mar 2008 22:24:16 +0000 (22:24 +0000)]
Updated on 03-19-2008 by Donghui
: ----------------------------------------------------------------------
svn path=/; revision=69
donghui [Wed, 19 Mar 2008 20:42:32 +0000 (20:42 +0000)]
Updated by Donghui 03/19/2008
-----------------------------------------------------------------
svn path=/; revision=68
donghui [Wed, 12 Dec 2007 23:15:22 +0000 (23:15 +0000)]
updated 2007-12-11 by Donghui:
`----------------------------------------------------------------------
svn path=/; revision=67
shuly [Fri, 2 Nov 2007 15:02:24 +0000 (15:02 +0000)]
removed space from taxon field
svn path=/; revision=66
polaccom [Thu, 27 Sep 2007 22:35:58 +0000 (22:35 +0000)]
This file adds new rows, the allele responsible for the association to gene by phenotype and replaces the uninformative previous generic ref with the record, similar to the NASC associations files. IN cases of multiple alleles for a row, the one with a stock at the Maize Genetics Cooperation Stock Center is preferred. (Mary SchaefferSep 2007)
svn path=/; revision=65
liya [Thu, 30 Aug 2007 14:53:16 +0000 (14:53 +0000)]
gramene release 26
svn path=/; revision=64
donghui [Wed, 18 Jul 2007 16:05:44 +0000 (16:05 +0000)]
updated association files by donghui 07-18-2007
svn path=/; revision=63
liya [Wed, 7 Mar 2007 14:54:02 +0000 (14:54 +0000)]
update GR db source to GR_gene and GR_QTL
svn path=/; revision=62
liya [Wed, 28 Feb 2007 21:43:05 +0000 (21:43 +0000)]
update SM evidence code to IMP due to POC without SM
svn path=/; revision=61
donghui [Wed, 28 Feb 2007 18:10:38 +0000 (18:10 +0000)]
updated by Donghui
svn path=/; revision=60
liya [Wed, 28 Feb 2007 17:18:04 +0000 (17:18 +0000)]
gramene release 24
svn path=/; revision=59
donghui [Tue, 16 Jan 2007 22:23:33 +0000 (22:23 +0000)]
updated 2007-01-15 by donghui
:CVS: ----------------------------------------------------------------------
svn path=/; revision=58
donghui [Tue, 16 Jan 2007 22:09:52 +0000 (22:09 +0000)]
updated by donghui on 2007-01-15.
eCVS: ----------------------------------------------------------------------
svn path=/; revision=57
liya [Mon, 6 Nov 2006 16:43:59 +0000 (16:43 +0000)]
gramene release23
svn path=/; revision=56
katica [Tue, 31 Oct 2006 00:50:06 +0000 (00:50 +0000)]
Update of PSO associations from tair, 5086 lines, dated at 061027 (ki).
svn path=/; revision=55
katica [Tue, 31 Oct 2006 00:46:46 +0000 (00:46 +0000)]
update of associations from TAIR for Growth and Dev stages, total lines 397, updated by ki (dated 061027).
svn path=/; revision=54
katica [Thu, 31 Aug 2006 21:13:49 +0000 (21:13 +0000)]
removed annotations to the obsolete term "columella", total lines 4842, file generated on 060830 (KI).
svn path=/; revision=53
katica [Mon, 28 Aug 2006 20:50:42 +0000 (20:50 +0000)]
Update of associations from TAIR for growth and dev stages ontology, 388 lines, dated 060825 (ki)
svn path=/; revision=52
katica [Mon, 28 Aug 2006 20:39:27 +0000 (20:39 +0000)]
Update of PSO associations from tair,4837 lines, dated at 060825 (ki)
svn path=/; revision=51
liya [Wed, 23 Aug 2006 21:03:53 +0000 (21:03 +0000)]
gramene release 22
svn path=/; revision=50
liya [Fri, 19 May 2006 20:27:01 +0000 (20:27 +0000)]
gramene release 21
svn path=/; revision=49
katica [Tue, 9 May 2006 17:14:12 +0000 (17:14 +0000)]
*** empty log message ***
svn path=/; revision=48
liya [Tue, 7 Mar 2006 20:58:24 +0000 (20:58 +0000)]
Gramene release 20
svn path=/; revision=47
liya [Tue, 7 Mar 2006 18:56:17 +0000 (18:56 +0000)]
Gramene release 20
svn path=/; revision=46
liya [Tue, 7 Mar 2006 03:52:28 +0000 (03:52 +0000)]
Gramene release20
svn path=/; revision=45
shuly [Fri, 3 Feb 2006 20:37:00 +0000 (20:37 +0000)]
revised evidence code from NAS to IMP
svn path=/; revision=44
shuly [Fri, 3 Feb 2006 20:28:00 +0000 (20:28 +0000)]
annotations from NASC
svn path=/; revision=43
shuly [Thu, 22 Sep 2005 03:45:06 +0000 (03:45 +0000)]
Substituted by the po_temporal_gene_arabidopsis_tair.assoc file.
svn path=/; revision=42
katica [Wed, 21 Sep 2005 02:43:44 +0000 (02:43 +0000)]
removed associations to tair terms, 183 lines total
svn path=/; revision=41
katica [Fri, 16 Sep 2005 22:20:16 +0000 (22:20 +0000)]
added associations to both, growth and dev stages terms, total 186 lines.
svn path=/; revision=40
katica [Fri, 16 Sep 2005 18:03:52 +0000 (18:03 +0000)]
added new gene asssociations, total 2,051 lines.
svn path=/; revision=39
shuly [Thu, 21 Apr 2005 16:38:12 +0000 (16:38 +0000)]
in po_anatomy_gene_arabidopsis_tair.assoc
svn path=/; revision=38
shuly [Thu, 21 Apr 2005 16:34:38 +0000 (16:34 +0000)]
Katica's updates
svn path=/; revision=37
shuly [Thu, 21 Apr 2005 16:11:35 +0000 (16:11 +0000)]
*** empty log message ***
svn path=/; revision=36
shuly [Thu, 21 Apr 2005 16:09:13 +0000 (16:09 +0000)]
*** empty log message ***
svn path=/; revision=35
shuly [Thu, 21 Apr 2005 16:08:53 +0000 (16:08 +0000)]
*** empty log message ***
svn path=/; revision=34
shuly [Thu, 21 Apr 2005 16:06:51 +0000 (16:06 +0000)]
*** empty log message ***
svn path=/; revision=33
shuly [Thu, 21 Apr 2005 04:10:24 +0000 (04:10 +0000)]
renamed to po_anatomy_stock_zea_MaizeGDB.assoc
svn path=/; revision=32
shuly [Thu, 21 Apr 2005 04:09:29 +0000 (04:09 +0000)]
renamed to po_anatomy_phenotype_zea_MaizeGDB.assoc
svn path=/; revision=31
shuly [Thu, 21 Apr 2005 04:08:09 +0000 (04:08 +0000)]
po_anatomy_gene_zea_MaizeGDB.assoc
svn path=/; revision=30
shuly [Thu, 21 Apr 2005 04:05:32 +0000 (04:05 +0000)]
renamed to po_anatomy_gene_oryza_gramene.assoc
svn path=/; revision=29
shuly [Thu, 21 Apr 2005 04:03:18 +0000 (04:03 +0000)]
renamed to po_anatomy_gene_arabidopsis_tair.assoc
svn path=/; revision=28
shuly [Thu, 21 Apr 2005 03:55:20 +0000 (03:55 +0000)]
renamed file to po_growth_gene_arabidopsis_tair.assoc
svn path=/; revision=27
pankaj [Wed, 20 Apr 2005 20:33:55 +0000 (20:33 +0000)]
Gramene's association file to POC growth stahe ontology
svn path=/; revision=26
katica [Wed, 13 Apr 2005 18:56:36 +0000 (18:56 +0000)]
updated gene associations to PO anatomy terms. 1486 lines.
svn path=/; revision=25
katica [Tue, 12 Apr 2005 22:57:07 +0000 (22:57 +0000)]
Arabidopsis annotations to POC growth stages. 75 lines, 04-11-05.
svn path=/; revision=24
shuly [Tue, 22 Feb 2005 17:47:46 +0000 (17:47 +0000)]
Changed wrong acc from PO:
0005368 to PO:
0005360
svn path=/; revision=23
shuly [Fri, 18 Feb 2005 19:24:57 +0000 (19:24 +0000)]
Wrong file name - shouldn't have the .txt suffix in first place
svn path=/; revision=22
shuly [Fri, 18 Feb 2005 19:23:02 +0000 (19:23 +0000)]
Rename file name to have the po_prefix
svn path=/; revision=21
shuly [Fri, 18 Feb 2005 19:20:08 +0000 (19:20 +0000)]
Rename file name to have the po_ prefix
svn path=/; revision=20
shuly [Fri, 18 Feb 2005 19:15:04 +0000 (19:15 +0000)]
Fix by Katica - fixed wrong acc
svn path=/; revision=19
shuly [Fri, 18 Feb 2005 19:12:56 +0000 (19:12 +0000)]
Changed name from gene_association.tair_arabosopsis to have the po_ prefix
svn path=/; revision=18
shuly [Fri, 18 Feb 2005 19:08:10 +0000 (19:08 +0000)]
Removed wrong acc: PO:0000NA
svn path=/; revision=17
shuly [Fri, 18 Feb 2005 19:01:02 +0000 (19:01 +0000)]
Canged name from phenotype_association.gramene_oryza to po_gene_association.gramene_oryza
svn path=/; revision=16
shuly [Fri, 18 Feb 2005 18:34:06 +0000 (18:34 +0000)]
Rest - renamed the file to test_tair_txt
svn path=/; revision=15
shuly [Fri, 14 Jan 2005 23:14:41 +0000 (23:14 +0000)]
Added associations.
Added object type 'gene'.
svn path=/; revision=14
shuly [Fri, 10 Dec 2004 03:26:09 +0000 (03:26 +0000)]
added gene_sequenced instead of gene to the association type
svn path=/; revision=13
katica [Fri, 10 Dec 2004 02:52:42 +0000 (02:52 +0000)]
replaced gene by gene_sequenced
svn path=/; revision=12
katica [Fri, 10 Dec 2004 01:46:06 +0000 (01:46 +0000)]
corrected carriage returns in the file
svn path=/; revision=11
katica [Fri, 10 Dec 2004 01:44:38 +0000 (01:44 +0000)]
Initial load
svn path=/; revision=10
polaccom [Mon, 6 Dec 2004 17:10:51 +0000 (17:10 +0000)]
Mary - updated object type to 'gene'; update the db reference with a general
reference to describe how the IMP associations are made in MaizeGDB, and a
second for certain of the Neuffer mutant collection.
svn path=/; revision=9
shuly [Sun, 5 Dec 2004 03:25:15 +0000 (03:25 +0000)]
Shuly - fixed format:
added missing empty columns, changed object type from 'gene' to 'gene_sequenced'
svn path=/; revision=8
polaccom [Fri, 3 Dec 2004 19:56:17 +0000 (19:56 +0000)]
format of file altered
svn path=/; revision=7
polaccom [Fri, 3 Dec 2004 19:54:04 +0000 (19:54 +0000)]
format of file altered only
svn path=/; revision=6
polaccom [Fri, 3 Dec 2004 19:46:43 +0000 (19:46 +0000)]
File format updated only
svn path=/; revision=5
polaccom [Thu, 2 Dec 2004 00:57:57 +0000 (00:57 +0000)]
*** empty log message ***
svn path=/; revision=4
shuly [Tue, 26 Oct 2004 16:59:56 +0000 (16:59 +0000)]
*** empty log message ***
svn path=/; revision=3
pujar [Thu, 21 Oct 2004 16:34:39 +0000 (16:34 +0000)]
changed the object_type from "gene" to "phenotype"
svn path=/; revision=2
pankaj [Fri, 15 Oct 2004 19:40:09 +0000 (19:40 +0000)]
first trial version with annotations for "seed" term and its children
svn path=/; revision=1
projects / associations / .git / log