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lingutln [Sat, 14 Jan 2012 00:40:47 +0000 (00:40 +0000)]
Working functionality for Layered segmentation. Done by Nikhil.
svn path=/; revision=263
lingutln [Thu, 12 Jan 2012 23:40:35 +0000 (23:40 +0000)]
Separated out the SegmentationObject from SegmentationMask. Done by Nikhil.
svn path=/; revision=262
lingutln [Wed, 11 Jan 2012 23:14:15 +0000 (23:14 +0000)]
Independent segment enabling functionality. Done by Nikhil.
svn path=/; revision=261
lingutln [Tue, 10 Jan 2012 23:39:29 +0000 (23:39 +0000)]
Labeling mode functionality(left click). Done by Nikhil.
svn path=/; revision=260
athreyab [Tue, 10 Jan 2012 18:15:15 +0000 (18:15 +0000)]
interaction path- initial commit
svn path=/; revision=259
lingutln [Tue, 10 Jan 2012 00:13:45 +0000 (00:13 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=258
lingutln [Mon, 9 Jan 2012 23:35:10 +0000 (23:35 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=257
lingutln [Mon, 9 Jan 2012 02:35:50 +0000 (02:35 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=256
preecej [Sat, 7 Jan 2012 02:11:07 +0000 (02:11 +0000)]
Fixed white-box paralogy bug (caused to even-numbered max paralogs);
cleanly separated heat-map f(x) from custom BoxColor; spread heat-map
increments more evenly across the gradient via fixed outer bounds
svn path=/; revision=255
elserj [Fri, 6 Jan 2012 18:14:16 +0000 (18:14 +0000)]
Update to spelled out names, and fix if translation already in file
svn path=/; revision=254
lingutln [Thu, 5 Jan 2012 19:57:09 +0000 (19:57 +0000)]
svn path=/; revision=253
lingutln [Thu, 5 Jan 2012 09:06:11 +0000 (09:06 +0000)]
svn path=/; revision=252
lingutln [Thu, 5 Jan 2012 07:53:37 +0000 (07:53 +0000)]
svn path=/; revision=251
lingutln [Wed, 4 Jan 2012 20:50:36 +0000 (20:50 +0000)]
Layered Segmentation related. Done by Nikhil.
svn path=/; revision=250
lingutln [Tue, 3 Jan 2012 23:02:06 +0000 (23:02 +0000)]
Layering of Segments.Done by Nikhil.
svn path=/; revision=249
lingutln [Tue, 3 Jan 2012 20:00:50 +0000 (20:00 +0000)]
Added new icon for specifying to form a segment. Done by Nikhil.
svn path=/; revision=248
lingutln [Tue, 3 Jan 2012 19:34:43 +0000 (19:34 +0000)]
Modified popup Exception. Done by Nikhil.
svn path=/; revision=247
lingutln [Sun, 1 Jan 2012 01:44:50 +0000 (01:44 +0000)]
Modified Layout for popup dialog. Done by Nikhil.
svn path=/; revision=246
lingutln [Fri, 30 Dec 2011 23:01:28 +0000 (23:01 +0000)]
Popup dialog functionality. Done by Nikhil.
svn path=/; revision=245
lingutln [Thu, 29 Dec 2011 22:58:48 +0000 (22:58 +0000)]
UI for pop up label and modified the getLabels functionality for Annotation combo box. Done by Nikhil.
svn path=/; revision=244
lingutln [Wed, 28 Dec 2011 22:51:04 +0000 (22:51 +0000)]
Popup Label functionality. Done by Nikhil.
svn path=/; revision=243
lingutln [Wed, 28 Dec 2011 08:45:55 +0000 (08:45 +0000)]
Pop up listener functionality. Done by Nikhil.
svn path=/; revision=242
lingutln [Tue, 27 Dec 2011 22:58:54 +0000 (22:58 +0000)]
PO:ID instead of parent, Layout change, cursor change and slight modifications. Done by Nikhil.
svn path=/; revision=241
lingutln [Tue, 27 Dec 2011 03:12:35 +0000 (03:12 +0000)]
Layout Modifications. Done by Nikhil.
svn path=/; revision=240
lingutln [Mon, 26 Dec 2011 22:45:33 +0000 (22:45 +0000)]
Toggling between segmentation and labeling functionality. Done by Nikhil.
svn path=/; revision=239
lingutln [Mon, 26 Dec 2011 21:55:51 +0000 (21:55 +0000)]
Done by Nikhil.
svn path=/; revision=238
lingutln [Mon, 26 Dec 2011 03:18:08 +0000 (03:18 +0000)]
Implemented functionality of toggling between Segmentation mode and labelling mode. Done by Nikhil.
svn path=/; revision=237
lingutln [Fri, 23 Dec 2011 21:02:27 +0000 (21:02 +0000)]
Added Toggle Between Segmentation and Labelling icon in the menu bar. Done by Nikhil.
svn path=/; revision=236
lingutln [Fri, 23 Dec 2011 19:15:30 +0000 (19:15 +0000)]
Modified Enable/Disable functionality. Done by Nikhil.
svn path=/; revision=235
lingutln [Thu, 22 Dec 2011 23:30:21 +0000 (23:30 +0000)]
svn path=/; revision=234
lingutln [Thu, 22 Dec 2011 23:27:43 +0000 (23:27 +0000)]
Modifications to Enable/Disable functionality. Done by Nikhil.
svn path=/; revision=233
lingutln [Thu, 22 Dec 2011 22:26:25 +0000 (22:26 +0000)]
Down arrow functionality for annotation combo box. Done by Nikhil.
svn path=/; revision=232
lingutln [Tue, 20 Dec 2011 22:58:34 +0000 (22:58 +0000)]
svn path=/; revision=231
preecej [Mon, 19 Dec 2011 21:29:45 +0000 (21:29 +0000)]
svn path=/; revision=230
preecej [Mon, 19 Dec 2011 21:29:21 +0000 (21:29 +0000)]
Added to hold jar's assoc. w/ project
svn path=/; revision=229
lingutln [Mon, 19 Dec 2011 19:00:19 +0000 (19:00 +0000)]
Modifications, done by Nikhil.
svn path=/; revision=228
lingutln [Mon, 19 Dec 2011 03:47:37 +0000 (03:47 +0000)]
Minor change in commit.
svn path=/; revision=227
lingutln [Mon, 19 Dec 2011 03:26:46 +0000 (03:26 +0000)]
Implemented Tooltip text functionality. Done by Nikhil.
svn path=/; revision=226
lingutln [Sat, 17 Dec 2011 00:07:09 +0000 (00:07 +0000)]
Latest commit. Done by Nikhil.
svn path=/; revision=225
lingutln [Fri, 16 Dec 2011 21:54:59 +0000 (21:54 +0000)]
Latest Commit, done by Nikhil.
svn path=/; revision=224
lingutln [Tue, 13 Dec 2011 22:54:54 +0000 (22:54 +0000)]
Annotation Project with new structure of packages.
svn path=/; revision=223
lingutln [Tue, 13 Dec 2011 22:51:31 +0000 (22:51 +0000)]
Initial import.
svn path=/; revision=222
elserj [Tue, 13 Dec 2011 21:05:27 +0000 (21:05 +0000)]
Make sure in alphabetical order and add new species
svn path=/; revision=221
lingutln [Mon, 12 Dec 2011 21:33:45 +0000 (21:33 +0000)]
Added auto-enable/disable functionality to the annotation combo and assign button. Done by Nikhil.
svn path=/; revision=220
lingutln [Wed, 23 Nov 2011 21:02:47 +0000 (21:02 +0000)]
Save functionality. Done by Nikhil.
svn path=/; revision=219
elserj [Sat, 19 Nov 2011 00:06:37 +0000 (00:06 +0000)]
Added Venn diagram creation script, to be used with supercluster database
svn path=/; revision=218
lingutln [Thu, 17 Nov 2011 00:06:58 +0000 (00:06 +0000)]
Added some Modification to annotate box. Done by Nikhil.
svn path=/; revision=217
preecej [Tue, 15 Nov 2011 00:59:17 +0000 (00:59 +0000)]
Changed "term_name" to "is_synonym_of" in PO_term_search_response
svn path=/; revision=216
preecej [Mon, 14 Nov 2011 21:23:17 +0000 (21:23 +0000)]
Added more querystring options
svn path=/; revision=215
preecej [Mon, 14 Nov 2011 20:22:05 +0000 (20:22 +0000)]
Revised to make generically available via plantontology.org, also to add
synonym searching functionality
svn path=/; revision=214
lingutln [Mon, 14 Nov 2011 19:21:05 +0000 (19:21 +0000)]
Adding a label functionality. Done by Nikhil.
svn path=/; revision=213
lingutln [Mon, 7 Nov 2011 19:52:57 +0000 (19:52 +0000)]
Uploaded initial version of image annotation project
svn path=/; revision=212
rajar [Wed, 2 Nov 2011 21:46:59 +0000 (21:46 +0000)]
removed one file
svn path=/; revision=211
rajar [Wed, 2 Nov 2011 21:42:55 +0000 (21:42 +0000)]
Script to run TMHMM application
svn path=/; revision=210
rajar [Wed, 2 Nov 2011 21:41:32 +0000 (21:41 +0000)]
deleted
svn path=/; revision=209
rajar [Wed, 2 Nov 2011 21:39:40 +0000 (21:39 +0000)]
COMMAND TO RUN PREDOTAR
svn path=/; revision=208
rajar [Wed, 2 Nov 2011 21:33:03 +0000 (21:33 +0000)]
Script to run TMHMM application
svn path=/; revision=207
rajar [Wed, 2 Nov 2011 21:14:26 +0000 (21:14 +0000)]
Script to run TARGETP Aplication
svn path=/; revision=206
rajar [Wed, 2 Nov 2011 21:06:45 +0000 (21:06 +0000)]
svn path=/; revision=205
rajar [Wed, 2 Nov 2011 20:54:43 +0000 (20:54 +0000)]
Script to run TMHMM Application
svn path=/; revision=204
rajar [Wed, 2 Nov 2011 20:53:06 +0000 (20:53 +0000)]
File removed
svn path=/; revision=203
rajar [Wed, 2 Nov 2011 20:14:25 +0000 (20:14 +0000)]
Script to run Targetp application
svn path=/; revision=202
rajar [Tue, 1 Nov 2011 20:24:46 +0000 (20:24 +0000)]
Script to run TMMHMM
svn path=/; revision=201
preecej [Wed, 26 Oct 2011 21:45:53 +0000 (21:45 +0000)]
Cleanup...
svn path=/; revision=200
preecej [Wed, 26 Oct 2011 21:45:24 +0000 (21:45 +0000)]
Cleanup...
svn path=/; revision=199
preecej [Wed, 26 Oct 2011 21:33:46 +0000 (21:33 +0000)]
Cleanup time...
svn path=/; revision=198
lingutln [Tue, 25 Oct 2011 22:29:29 +0000 (22:29 +0000)]
test
svn path=/; revision=197
elserj [Tue, 25 Oct 2011 22:14:52 +0000 (22:14 +0000)]
restructuring of the jaiswal lab svn repo
svn path=/; revision=196
foxsa [Tue, 25 Oct 2011 20:24:16 +0000 (20:24 +0000)]
test file added 13:24
svn path=/; revision=195
foxsa [Tue, 25 Oct 2011 20:21:48 +0000 (20:21 +0000)]
test file added
svn path=/; revision=194
foxsa [Tue, 25 Oct 2011 20:20:26 +0000 (20:20 +0000)]
svn path=/; revision=193
foxsa [Tue, 25 Oct 2011 20:19:38 +0000 (20:19 +0000)]
svn path=/; revision=192
foxsa [Tue, 25 Oct 2011 20:15:50 +0000 (20:15 +0000)]
modified by sam fox
svn path=/; revision=191
preecej [Wed, 19 Oct 2011 00:11:18 +0000 (00:11 +0000)]
Mod'd the heat map "temperature" to apply evenly to all grouped paralogs that
map to a single original gene. This is clearer for the user.
svn path=/; revision=190
preecej [Tue, 18 Oct 2011 19:01:19 +0000 (19:01 +0000)]
update doc
svn path=/; revision=189
preecej [Tue, 18 Oct 2011 00:31:22 +0000 (00:31 +0000)]
Heat map feature complete.
svn path=/; revision=188
preecej [Mon, 17 Oct 2011 23:25:12 +0000 (23:25 +0000)]
More gradient heat map progress...
svn path=/; revision=187
preecej [Mon, 17 Oct 2011 22:10:01 +0000 (22:10 +0000)]
Adding gradient heat-map feature. In progress...
svn path=/; revision=186
preecej [Sat, 15 Oct 2011 01:14:27 +0000 (01:14 +0000)]
Completed gene symbol feature; working on heat map feature
svn path=/; revision=185
preecej [Fri, 14 Oct 2011 20:22:14 +0000 (20:22 +0000)]
minor adjustments to maize script; in progress: adding gene symbol
feature to gene swapper
svn path=/; revision=184
preecej [Wed, 5 Oct 2011 00:19:18 +0000 (00:19 +0000)]
Added maize classical gene name and symbol mapping script for POC
svn path=/; revision=183
elserj [Sat, 24 Sep 2011 00:26:26 +0000 (00:26 +0000)]
Added potato
svn path=/; revision=182
rajar [Wed, 14 Sep 2011 21:11:03 +0000 (21:11 +0000)]
initial import of Rajani's repo
svn path=/; revision=181
preecej [Thu, 8 Sep 2011 01:32:48 +0000 (01:32 +0000)]
fixed non-PMID: ref pub strip at line 291
svn path=/; revision=180
preecej [Wed, 7 Sep 2011 23:01:12 +0000 (23:01 +0000)]
paw_...: backed out the max file size option
Local...: added GO web service autocomplete reference
svn path=/; revision=179
preecej [Wed, 7 Sep 2011 22:30:23 +0000 (22:30 +0000)]
Updated test.TermSearch_JSON.php to use Test env vars
svn path=/; revision=178
preecej [Wed, 7 Sep 2011 22:27:22 +0000 (22:27 +0000)]
Making this file env-specific
svn path=/; revision=177
preecej [Wed, 7 Sep 2011 18:07:41 +0000 (18:07 +0000)]
Publication adjustments
svn path=/; revision=176
preecej [Sat, 3 Sep 2011 00:19:57 +0000 (00:19 +0000)]
Tweaked for oryza (refined multi-species handling)
svn path=/; revision=175
preecej [Fri, 2 Sep 2011 21:51:09 +0000 (21:51 +0000)]
Added Reference Publication page generation; modified ontology
provenance format
svn path=/; revision=174
preecej [Fri, 2 Sep 2011 01:32:04 +0000 (01:32 +0000)]
Added provenance for Gene Synonyms, Ontologies
svn path=/; revision=173
preecej [Sat, 27 Aug 2011 00:12:47 +0000 (00:12 +0000)]
Added more Evidence Code and Evidence functionality, GO web services,
and GO/PO web service term id lookup capabilities
svn path=/; revision=172
preecej [Fri, 26 Aug 2011 00:32:15 +0000 (00:32 +0000)]
Added GO web services in TermSearch_JSON. More XML doc output revisions
on paw_TranformForImport.
svn path=/; revision=171
preecej [Thu, 25 Aug 2011 00:23:16 +0000 (00:23 +0000)]
In progress; Revised ontology info, ontology references, evidence, evidence codes,
and gene synonyms. Generated XML pages for all except Publications.
That's next.
svn path=/; revision=170
preecej [Wed, 24 Aug 2011 01:29:34 +0000 (01:29 +0000)]
In progress; added handling for grouped ont term ids in gaf import, inc multiple gene
synonyms, evidence codes, evidence data (with_or_from), and publication
ids (db:reference PMID's). Need to complete by building corresponding wiki XML pages
and properties.
svn path=/; revision=169
preecej [Mon, 22 Aug 2011 23:47:25 +0000 (23:47 +0000)]
Changed Has_Evidence_Code to array; now allows multiple values per
ontological reference; also added to Annotation formand template display
svn path=/; revision=168
preecej [Mon, 22 Aug 2011 22:57:27 +0000 (22:57 +0000)]
whoops, don't want this one in there
svn path=/; revision=167
preecej [Mon, 22 Aug 2011 22:56:00 +0000 (22:56 +0000)]
Moved wiki config files and pruned all old versions in one fell swoop
svn path=/; revision=166
preecej [Mon, 22 Aug 2011 22:29:11 +0000 (22:29 +0000)]
holds proper db connex string for command-line PHP scripts like
flushJobs and refreshLinks
svn path=/; revision=165
preecej [Wed, 17 Aug 2011 23:57:05 +0000 (23:57 +0000)]
Includes indirect listing of db conection info
svn path=/; revision=164
projects / old-jaiswallab-svn / .git / log