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Laurel Cooper [Thu, 31 Jul 2025 22:15:37 +0000 (15:15 -0700)]
Removed 4 duplicated lines
cooperl09 [Thu, 31 Jul 2025 19:01:26 +0000 (12:01 -0700)]
Adding more barley QTLs, fixing annotations
cooperl09 [Wed, 30 Jul 2025 23:10:49 +0000 (16:10 -0700)]
Added line return at the end
cooperl09 [Wed, 30 Jul 2025 22:10:15 +0000 (15:10 -0700)]
Adding more annotations
cooperl09 [Wed, 30 Jul 2025 19:16:39 +0000 (12:16 -0700)]
Fixed typo
cooperl09 [Wed, 30 Jul 2025 19:05:51 +0000 (12:05 -0700)]
Adding test file of GrainGenes QTLs
Justin Elser [Tue, 29 Jul 2025 23:02:11 +0000 (16:02 -0700)]
Change all obsoleted GO terms with known replacements
cooperl09 [Mon, 28 Jul 2025 22:00:55 +0000 (15:00 -0700)]
Updated annotations to insect responses
cooperl09 [Mon, 28 Jul 2025 21:40:50 +0000 (14:40 -0700)]
Replaced 1 TO term, removed by mistake
cooperl09 [Mon, 28 Jul 2025 21:34:37 +0000 (14:34 -0700)]
Updated annotations to insect traits
Justin Elser [Mon, 28 Jul 2025 20:23:19 +0000 (13:23 -0700)]
Remove extra tab
cooperl09 [Mon, 28 Jul 2025 16:46:01 +0000 (09:46 -0700)]
Removed redundant annotation to parent term
cooperl09 [Fri, 25 Jul 2025 22:44:07 +0000 (15:44 -0700)]
Removed 10 annotated QTL as we have no evidence to support them
Laurel Cooper [Thu, 17 Jul 2025 20:18:21 +0000 (14:18 -0600)]
Moved IRRI germplasm files to a new folder
Laurel Cooper [Mon, 14 Jul 2025 22:11:27 +0000 (16:11 -0600)]
Moved 1 annotation to vivpary TO:
0000619 from seed dormancy
Laurel Cooper [Mon, 14 Jul 2025 22:08:56 +0000 (16:08 -0600)]
Moved 11 annotations from seed dormancy TO:
0000253 to New term- grain dormancy TO:
0001159
Laurel Cooper [Mon, 14 Jul 2025 22:05:11 +0000 (16:05 -0600)]
Moved annotations to vivpary TO:
0000619 from seed dormancy
Laurel Cooper [Mon, 14 Jul 2025 21:55:09 +0000 (15:55 -0600)]
Moved 11 annotations from seed dormancy TO:
0000253 to New term- grain dormancy TO:
0001159
Laurel Cooper [Mon, 14 Jul 2025 21:35:58 +0000 (15:35 -0600)]
Moved 164 rice QTLs from seed dormancy to grain dormancy TO:
0001159
Laurel Cooper [Mon, 14 Jul 2025 20:10:56 +0000 (14:10 -0600)]
Moved ND gene to tillering TO:
0000329
cooperl09 [Wed, 9 Jul 2025 18:21:45 +0000 (11:21 -0700)]
Moved annotations to new shoot axis length term TO:
0001158 and TO:
0000634 node #
cooperl09 [Tue, 8 Jul 2025 15:40:56 +0000 (08:40 -0700)]
Moved 2 QTLs to grain moisture TO:
0000057
Laurel Cooper [Wed, 2 Jul 2025 22:41:53 +0000 (15:41 -0700)]
Fixed annotations, removed duplicated synonyms
Laurel Cooper [Mon, 2 Jun 2025 19:00:12 +0000 (12:00 -0700)]
Sorted by accession #
Laurel Cooper [Mon, 2 Jun 2025 18:17:08 +0000 (11:17 -0700)]
Added header line
No duplicates
Laurel Cooper [Mon, 2 Jun 2025 17:57:49 +0000 (10:57 -0700)]
Added header line
No duplicates
Laurel Cooper [Mon, 2 Jun 2025 17:54:21 +0000 (10:54 -0700)]
Added header line
No Duplicates
Laurel Cooper [Mon, 2 Jun 2025 17:50:54 +0000 (10:50 -0700)]
Added header line
No duplicates
Laurel Cooper [Mon, 2 Jun 2025 17:47:52 +0000 (10:47 -0700)]
Added header line
No duplicates
cooperl09 [Fri, 30 May 2025 22:34:53 +0000 (15:34 -0700)]
Added column headings line
cooperl09 [Thu, 29 May 2025 22:27:56 +0000 (15:27 -0700)]
Removed 23,490 duplicated lines
cooperl09 [Sun, 25 May 2025 16:41:09 +0000 (09:41 -0700)]
Fixed reference
cooperl09 [Sat, 24 May 2025 18:10:12 +0000 (11:10 -0700)]
Fixed evidence code
Laurel Cooper [Fri, 23 May 2025 18:45:51 +0000 (11:45 -0700)]
Replaced IAGP with EXP evidence code
Laurel Cooper [Fri, 23 May 2025 18:42:17 +0000 (11:42 -0700)]
Replaced IAGP evidence code with EXP
Laurel Cooper [Fri, 9 May 2025 22:45:08 +0000 (15:45 -0700)]
Moved 7 qtl annotations to TO:
0000604
Laurel Cooper [Thu, 8 May 2025 21:51:15 +0000 (14:51 -0700)]
Moved 11 annotations from TO:
0000488 seed composition quality trait
cooperl09 [Thu, 8 May 2025 18:55:58 +0000 (11:55 -0700)]
Fixed annotation on WD! gene to TO:
0000604, which is a child of metabolite content trait
Justin Elser [Wed, 7 May 2025 14:14:15 +0000 (07:14 -0700)]
Change OB_Gene to Oryzabase to match dbxrefs.yaml
cooperl09 [Tue, 6 May 2025 19:51:07 +0000 (12:51 -0700)]
Added new test file of Oryzabase genes
cooperl09 [Mon, 5 May 2025 21:16:43 +0000 (14:16 -0700)]
Fixing typo in Oryza gene name
Error is coming from Gramene page
cooperl09 [Fri, 18 Apr 2025 18:52:38 +0000 (11:52 -0700)]
Fixed two mappings for maize QTLs
cooperl09 [Fri, 21 Mar 2025 22:34:58 +0000 (15:34 -0700)]
reverting test
cooperl09 [Fri, 21 Mar 2025 22:34:21 +0000 (15:34 -0700)]
testing
Laurel Cooper [Thu, 6 Mar 2025 19:09:07 +0000 (11:09 -0800)]
reverting test
Laurel Cooper [Thu, 6 Mar 2025 19:08:14 +0000 (11:08 -0800)]
test
Laurel Cooper [Tue, 4 Mar 2025 22:00:33 +0000 (14:00 -0800)]
Merge branch 'main' of https://gitlab.cqls.oregonstate.edu/jaiswal-lab/associations
cooperl09 [Tue, 4 Mar 2025 19:44:53 +0000 (11:44 -0800)]
Reverting test
cooperl09 [Tue, 4 Mar 2025 19:41:42 +0000 (11:41 -0800)]
Test
Laurel Cooper [Mon, 3 Mar 2025 22:12:12 +0000 (14:12 -0800)]
Create .gitignore
cooperl [Wed, 29 Jan 2025 18:25:17 +0000 (18:25 +0000)]
Fixing QTL annotations to TO:
0000439
svn path=/; revision=1137
cooperl [Tue, 7 Jan 2025 20:22:49 +0000 (20:22 +0000)]
Removing the test file
svn path=/; revision=1136
cooperl [Tue, 7 Jan 2025 20:22:01 +0000 (20:22 +0000)]
Adding annotations from Parul's test file
svn path=/; revision=1135
cooperl [Wed, 11 Dec 2024 19:29:27 +0000 (19:29 +0000)]
Adding new test file for Parul
svn path=/; revision=1134
cooperl [Wed, 11 Dec 2024 19:27:00 +0000 (19:27 +0000)]
Removing test file for Parul
svn path=/; revision=1133
cooperl [Tue, 19 Nov 2024 22:26:27 +0000 (22:26 +0000)]
Adding missing QTL name and reference DOI
svn path=/; revision=1132
cooperl [Tue, 19 Nov 2024 18:03:44 +0000 (18:03 +0000)]
Added annotations to xylem, Clusters 12,16
svn path=/; revision=1131
cooperl [Tue, 19 Nov 2024 17:55:47 +0000 (17:55 +0000)]
Adding a few missing gene names
svn path=/; revision=1130
cooperl [Tue, 19 Nov 2024 17:18:33 +0000 (17:18 +0000)]
Fixed a few gene names
svn path=/; revision=1129
cooperl [Mon, 18 Nov 2024 18:44:48 +0000 (18:44 +0000)]
Fixed a few gene names
M po_anatomy_gene_0ryza_poc.assoc
svn path=/; revision=1128
cooperl [Mon, 18 Nov 2024 16:32:49 +0000 (16:32 +0000)]
Fixed a few gene names and missing symbols
svn path=/; revision=1127
cooperl [Fri, 15 Nov 2024 18:32:25 +0000 (18:32 +0000)]
Fixed gene name
svn path=/; revision=1126
cooperl [Thu, 14 Nov 2024 19:38:32 +0000 (19:38 +0000)]
Fixed gene name
svn path=/; revision=1125
cooperl [Thu, 14 Nov 2024 18:08:54 +0000 (18:08 +0000)]
Fixed one gene name
svn path=/; revision=1124
cooperl [Tue, 12 Nov 2024 18:59:40 +0000 (18:59 +0000)]
Fixed gene name
svn path=/; revision=1123
cooperl [Thu, 7 Nov 2024 22:48:14 +0000 (22:48 +0000)]
Fixing gene name
svn path=/; revision=1122
cooperl [Wed, 6 Nov 2024 17:34:42 +0000 (17:34 +0000)]
Removing test file
svn path=/; revision=1121
cooperl [Wed, 6 Nov 2024 17:23:29 +0000 (17:23 +0000)]
Fixed Assigned by and copied annotations from test file to Zhang 2021 file
svn path=/; revision=1120
cooperl [Tue, 5 Nov 2024 23:00:38 +0000 (23:00 +0000)]
Adding the Cluster 15 annotations
svn path=/; revision=1119
cooperl [Tue, 5 Nov 2024 22:05:35 +0000 (22:05 +0000)]
Fixed db IDs with "area" appended to them
svn path=/; revision=1118
cooperl [Mon, 4 Nov 2024 20:05:26 +0000 (20:05 +0000)]
Fixing assigned by for 11 annotations
svn path=/; revision=1117
cooperl [Thu, 31 Oct 2024 20:23:29 +0000 (20:23 +0000)]
Removing file with links to Gramene, replaced by miRBase file
svn path=/; revision=1116
cooperl [Thu, 31 Oct 2024 20:15:18 +0000 (20:15 +0000)]
Fixed one ID
svn path=/; revision=1115
cooperl [Thu, 31 Oct 2024 20:10:20 +0000 (20:10 +0000)]
Adding new file with miRNA annotations linking to miRBase
svn path=/; revision=1114
cooperl [Wed, 30 Oct 2024 21:25:57 +0000 (21:25 +0000)]
Adding new file to check
svn path=/; revision=1113
cooperl [Tue, 29 Oct 2024 17:30:56 +0000 (17:30 +0000)]
Adding back missing column
svn path=/; revision=1112
cooperl [Mon, 28 Oct 2024 21:28:37 +0000 (21:28 +0000)]
Changed object type from gene to miRNA
svn path=/; revision=1111
cooperl [Wed, 23 Oct 2024 22:13:44 +0000 (22:13 +0000)]
Fixing "Assigned_by" field
svn path=/; revision=1110
cooperl [Wed, 23 Oct 2024 22:10:42 +0000 (22:10 +0000)]
Fixing "Assigned_by" field
svn path=/; revision=1109
cooperl [Wed, 23 Oct 2024 20:28:13 +0000 (20:28 +0000)]
Fixed a couple of the MiRNAs
svn path=/; revision=1108
cooperl [Wed, 23 Oct 2024 17:19:19 +0000 (17:19 +0000)]
Adding parul new test file
svn path=/; revision=1107
cooperl [Wed, 23 Oct 2024 16:38:59 +0000 (16:38 +0000)]
Removing the old test file
svn path=/; revision=1106
cooperl [Wed, 23 Oct 2024 15:05:54 +0000 (15:05 +0000)]
Removed miRNA duplicaed in new file
svn path=/; revision=1105
elserj [Tue, 22 Oct 2024 22:35:51 +0000 (22:35 +0000)]
Add correctly spelled file
svn path=/; revision=1104
elserj [Tue, 22 Oct 2024 22:35:20 +0000 (22:35 +0000)]
Remove badly named file
svn path=/; revision=1103
cooperl [Tue, 22 Oct 2024 21:09:52 +0000 (21:09 +0000)]
Adding file of Gramene Micro RNA genes
svn path=/; revision=1102
cooperl [Mon, 21 Oct 2024 20:02:09 +0000 (20:02 +0000)]
Removed all the miRNA annotations
This line, and those below, will be ignored--
M po-associations/po_growth_gene_oryza_poc.assoc
svn path=/; revision=1101
cooperl [Mon, 21 Oct 2024 18:31:22 +0000 (18:31 +0000)]
Fixed extra tab and added header row
svn path=/; revision=1100
cooperl [Fri, 18 Oct 2024 22:30:22 +0000 (22:30 +0000)]
removing test file
svn path=/; revision=1099
cooperl [Fri, 18 Oct 2024 22:29:28 +0000 (22:29 +0000)]
Added clusters 3, 8 annotations to main file
svn path=/; revision=1098
cooperl [Fri, 18 Oct 2024 22:27:22 +0000 (22:27 +0000)]
Fixed gene id
svn path=/; revision=1097
cooperl [Fri, 18 Oct 2024 18:53:38 +0000 (18:53 +0000)]
Replaced PMID with DOI
svn path=/; revision=1096
cooperl [Fri, 18 Oct 2024 18:39:05 +0000 (18:39 +0000)]
Fixed miRNA name
svn path=/; revision=1095
cooperl [Fri, 18 Oct 2024 18:20:10 +0000 (18:20 +0000)]
Fixed name of miRNA
svn path=/; revision=1094
cooperl [Fri, 18 Oct 2024 17:56:02 +0000 (17:56 +0000)]
Fixed object type from mRNA to gene
svn path=/; revision=1093
cooperl [Thu, 17 Oct 2024 18:42:42 +0000 (18:42 +0000)]
Removed cluster 3 annotations
svn path=/; revision=1092
cooperl [Thu, 17 Oct 2024 17:33:50 +0000 (17:33 +0000)]
Fixed missing DB ids
svn path=/; revision=1091
cooperl [Thu, 17 Oct 2024 16:52:19 +0000 (16:52 +0000)]
Adding test file of RAP-DB annotations for exodermis, PO:
0005772
svn path=/; revision=1090
cooperl [Sun, 13 Oct 2024 20:18:29 +0000 (20:18 +0000)]
Removed extra header line, partial line
svn path=/; revision=1089
cooperl [Fri, 11 Oct 2024 21:10:07 +0000 (21:10 +0000)]
Fixed gene name
svn path=/; revision=1088
projects / associations / .git / log