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cooperl [Thu, 29 Mar 2012 21:39:25 +0000 (21:39 +0000)]
Adding test files of TreeGenes annotations.
svn path=/; revision=317
cooperl [Thu, 29 Mar 2012 21:33:23 +0000 (21:33 +0000)]
Adding folder for test files from TreeGenes.
svn path=/; revision=316
elserj [Wed, 28 Mar 2012 22:29:10 +0000 (22:29 +0000)]
Remove file. Was replaced with jaiswallab version and dbxref changed to ncbi_gi
svn path=/; revision=315
elserj [Wed, 28 Mar 2012 22:12:43 +0000 (22:12 +0000)]
Change dbxref to ncbi_gi
svn path=/; revision=314
cooperl [Wed, 28 Mar 2012 21:22:50 +0000 (21:22 +0000)]
Added the po_anatomy_gene_Picea_jaiswallab.assoc for the Picea genes in the IAWA paper. This will link out to GenBank rahter than TreeGenes.
svn path=/; revision=313
cooperl [Wed, 28 Mar 2012 19:46:51 +0000 (19:46 +0000)]
Added new association file for Picea genes from Treegenes.
svn path=/; revision=312
elserj [Wed, 28 Mar 2012 17:46:11 +0000 (17:46 +0000)]
Fix column 3285. Had an extra tab char.
svn path=/; revision=311
cooperl [Tue, 27 Mar 2012 00:37:55 +0000 (00:37 +0000)]
Changed one annotation in po_anatomy_gene_arabidopsis_tair.assoc from xylem element (PO:
0000273) to tracheary element (PO:
0000290), as xylem element has been obsoleted.
svn path=/; revision=310
cooperl [Tue, 27 Mar 2012 00:09:34 +0000 (00:09 +0000)]
Moved the Cosmoss Physcomitrella file out of the test_physco folder
svn path=/; revision=309
elserj [Mon, 26 Mar 2012 23:43:26 +0000 (23:43 +0000)]
Removed old test directory
svn path=/; revision=308
cooperl [Mon, 26 Mar 2012 23:09:17 +0000 (23:09 +0000)]
Moving the AgBase association files to the main folder
svn path=/; revision=307
cooperl [Mon, 26 Mar 2012 22:55:53 +0000 (22:55 +0000)]
Moving the AgBase association files out of the test_cotton folder
svn path=/; revision=306
tair [Tue, 20 Mar 2012 06:23:30 +0000 (06:23 +0000)]
TAIR weekly commit
svn path=/; revision=305
tair [Tue, 20 Mar 2012 06:21:25 +0000 (06:21 +0000)]
TAIR weekly commit
svn path=/; revision=304
nm249 [Thu, 15 Mar 2012 21:06:08 +0000 (21:06 +0000)]
updated sgn annotations
svn path=/; revision=303
tair [Tue, 13 Mar 2012 06:20:02 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=302
tair [Tue, 13 Mar 2012 06:18:04 +0000 (06:18 +0000)]
TAIR weekly commit
svn path=/; revision=301
tair [Tue, 28 Feb 2012 07:19:58 +0000 (07:19 +0000)]
TAIR weekly commit
svn path=/; revision=300
tair [Tue, 28 Feb 2012 07:17:50 +0000 (07:17 +0000)]
TAIR weekly commit
svn path=/; revision=299
tair [Tue, 21 Feb 2012 07:23:39 +0000 (07:23 +0000)]
TAIR weekly commit
svn path=/; revision=298
tair [Tue, 21 Feb 2012 07:21:43 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=297
tair [Tue, 14 Feb 2012 07:20:28 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=296
tair [Tue, 14 Feb 2012 07:18:11 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=295
tair [Tue, 7 Feb 2012 07:20:14 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=294
tair [Tue, 7 Feb 2012 07:18:08 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=293
tair [Tue, 31 Jan 2012 07:20:19 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=292
tair [Tue, 31 Jan 2012 07:18:15 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=291
tair [Tue, 24 Jan 2012 07:20:18 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=290
tair [Tue, 24 Jan 2012 07:18:15 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=289
tair [Tue, 17 Jan 2012 07:20:20 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=288
tair [Tue, 17 Jan 2012 07:18:28 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=287
tair [Tue, 10 Jan 2012 07:20:22 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=286
tair [Tue, 10 Jan 2012 07:18:33 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=285
elserj [Mon, 9 Jan 2012 23:58:34 +0000 (23:58 +0000)]
Missed two
svn path=/; revision=284
elserj [Mon, 9 Jan 2012 23:46:07 +0000 (23:46 +0000)]
Fix extra tabs in file
svn path=/; revision=283
elserj [Fri, 6 Jan 2012 22:13:55 +0000 (22:13 +0000)]
Replace gramene obsolete associations to updated PO terms
svn path=/; revision=282
elserj [Fri, 30 Dec 2011 22:26:47 +0000 (22:26 +0000)]
Replace GenBank in column 1 with AgBase
svn path=/; revision=281
elserj [Thu, 29 Dec 2011 22:27:09 +0000 (22:27 +0000)]
Fix column 1 (db) names to point to correct names so that NameMunger.pm can give the appropriate links
svn path=/; revision=280
cooperl [Thu, 29 Dec 2011 21:11:14 +0000 (21:11 +0000)]
Fixed pubmed refs that were lacking the colon.
svn path=/; revision=279
cooperl [Thu, 29 Dec 2011 21:10:55 +0000 (21:10 +0000)]
Fixed pubmed refs that were lacking the colon.
svn path=/; revision=278
tair [Tue, 27 Dec 2011 07:20:59 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=277
tair [Tue, 27 Dec 2011 07:18:50 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=276
cooperl [Wed, 21 Dec 2011 21:19:22 +0000 (21:19 +0000)]
Removed duplicate lines and 12 lines that were missing a gene name (DB
Object ID) in column 2. Now has 224,641 lines.
svn path=/; revision=275
tair [Tue, 20 Dec 2011 07:20:53 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=274
tair [Tue, 20 Dec 2011 07:18:54 +0000 (07:18 +0000)]
TAIR weekly commit
svn path=/; revision=273
elserj [Fri, 16 Dec 2011 23:17:55 +0000 (23:17 +0000)]
Run dos2unix on files to get rid of extra Windows characters
svn path=/; revision=272
elserj [Fri, 16 Dec 2011 23:08:08 +0000 (23:08 +0000)]
Remove empty lines as it was making the AmiGO loading script give a bunch of errors
svn path=/; revision=271
cooperl [Thu, 15 Dec 2011 22:43:34 +0000 (22:43 +0000)]
Removed the old files that have been renamed.
svn path=/; revision=270
hwang [Thu, 15 Dec 2011 20:37:07 +0000 (20:37 +0000)]
PO:
0009790 replaced by PO:
0007631
svn path=/; revision=269
hwang [Thu, 15 Dec 2011 20:31:12 +0000 (20:31 +0000)]
PO:
0025034 (leaf) replaced by PO: PO:
0009025 (vascular leaf)
svn path=/; revision=268
lang [Thu, 15 Dec 2011 15:45:19 +0000 (15:45 +0000)]
now including the 7 additional conditions
svn path=/; revision=267
hwang [Wed, 14 Dec 2011 19:41:38 +0000 (19:41 +0000)]
file renamed
svn path=/; revision=266
hwang [Wed, 14 Dec 2011 19:34:59 +0000 (19:34 +0000)]
old file name replaced by a new file name
svn path=/; revision=265
cooperl [Wed, 14 Dec 2011 19:03:41 +0000 (19:03 +0000)]
Moved the older gaf2 association files to the "old" folder.
svn path=/; revision=264
hwang [Wed, 14 Dec 2011 18:58:39 +0000 (18:58 +0000)]
file cotton_PO_annotation removed
svn path=/; revision=263
hwang [Wed, 14 Dec 2011 16:16:07 +0000 (16:16 +0000)]
two new files added to replace the old version
svn path=/; revision=262
tair [Tue, 13 Dec 2011 07:21:26 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=261
tair [Tue, 13 Dec 2011 07:19:25 +0000 (07:19 +0000)]
TAIR weekly commit
svn path=/; revision=260
tair [Thu, 8 Dec 2011 00:23:51 +0000 (00:23 +0000)]
TAIR weekly commit
svn path=/; revision=259
tair [Thu, 8 Dec 2011 00:21:42 +0000 (00:21 +0000)]
TAIR weekly commit
svn path=/; revision=258
lang [Tue, 6 Dec 2011 15:15:27 +0000 (15:15 +0000)]
adding physco assoc file
svn path=/; revision=257
lang [Tue, 6 Dec 2011 15:12:29 +0000 (15:12 +0000)]
removing symlink
svn path=/; revision=256
lang [Tue, 6 Dec 2011 15:07:08 +0000 (15:07 +0000)]
moving to test
svn path=/; revision=255
lang [Tue, 6 Dec 2011 09:11:27 +0000 (09:11 +0000)]
Initial assoc file for Physcomitrella. Does not contain all experiments yet. Contains redundant entries. wc -l 238146 --> sort -u | wc -l 190408
svn path=/; revision=254
tair [Tue, 6 Dec 2011 07:20:54 +0000 (07:20 +0000)]
TAIR weekly commit
svn path=/; revision=253
tair [Tue, 6 Dec 2011 07:19:00 +0000 (07:19 +0000)]
TAIR weekly commit
svn path=/; revision=252
cooperl [Wed, 30 Nov 2011 21:32:54 +0000 (21:32 +0000)]
Adding cotton annotation file from AgBase
svn path=/; revision=251
tair [Tue, 29 Nov 2011 07:23:37 +0000 (07:23 +0000)]
TAIR weekly commit
svn path=/; revision=250
tair [Tue, 29 Nov 2011 07:21:20 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=249
tair [Tue, 22 Nov 2011 07:21:48 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=248
tair [Tue, 22 Nov 2011 07:19:32 +0000 (07:19 +0000)]
TAIR weekly commit
svn path=/; revision=247
cooperl [Wed, 16 Nov 2011 00:05:37 +0000 (00:05 +0000)]
Adding new grape association files from CRIBI (Nicola Vitulo)
svn path=/; revision=246
cooperl [Wed, 16 Nov 2011 00:02:42 +0000 (00:02 +0000)]
Removing older grape test association files.
svn path=/; revision=245
tair [Tue, 15 Nov 2011 07:24:38 +0000 (07:24 +0000)]
TAIR weekly commit
svn path=/; revision=244
tair [Tue, 15 Nov 2011 07:21:22 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=243
cooperl [Sun, 13 Nov 2011 00:53:01 +0000 (00:53 +0000)]
Added a test_cotton folder for temp Agbase association files
svn path=/; revision=242
cooperl [Sat, 12 Nov 2011 23:38:43 +0000 (23:38 +0000)]
trying commit again, as it was interupted
svn path=/; revision=241
cooperl [Sat, 12 Nov 2011 23:22:54 +0000 (23:22 +0000)]
removing files moved to folder 'old'
svn path=/; revision=240
cooperl [Sat, 12 Nov 2011 23:10:54 +0000 (23:10 +0000)]
moved PO_early_gametophores.txt to old
svn path=/; revision=239
cooperl [Sat, 12 Nov 2011 22:58:22 +0000 (22:58 +0000)]
moved the older files to folder 'old'
svn path=/; revision=238
cooperl [Sat, 12 Nov 2011 22:38:55 +0000 (22:38 +0000)]
Added missing "PO_early_gametophores.txt" file to svn
svn path=/; revision=237
cooperl [Sat, 12 Nov 2011 22:34:27 +0000 (22:34 +0000)]
created the folder'old' to move older assoc files to.
svn path=/; revision=236
cooperl [Wed, 9 Nov 2011 00:40:13 +0000 (00:40 +0000)]
Removed the files corresponding to the ABA treated samples as per
request from SR.
svn path=/; revision=235
tair [Tue, 8 Nov 2011 07:21:07 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=234
tair [Tue, 8 Nov 2011 07:19:31 +0000 (07:19 +0000)]
TAIR weekly commit
svn path=/; revision=233
tair [Tue, 1 Nov 2011 06:22:06 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=232
tair [Tue, 1 Nov 2011 06:19:53 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=231
tair [Tue, 25 Oct 2011 06:21:51 +0000 (06:21 +0000)]
TAIR weekly commit
svn path=/; revision=230
tair [Tue, 25 Oct 2011 06:19:42 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=229
tair [Tue, 18 Oct 2011 06:22:12 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=228
tair [Tue, 18 Oct 2011 06:19:46 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=227
elserj [Thu, 13 Oct 2011 17:15:34 +0000 (17:15 +0000)]
Includes mapped classical maize gene names provided by CoGe (mapped by JP)
svn path=/; revision=226
cooperl [Wed, 12 Oct 2011 22:13:40 +0000 (22:13 +0000)]
Removing two of the MaizeGDB association files that are no longer being maintained.
svn path=/; revision=225
tair [Tue, 11 Oct 2011 06:22:39 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=224
tair [Tue, 11 Oct 2011 06:20:19 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=223
zeamary [Thu, 6 Oct 2011 21:10:37 +0000 (21:10 +0000)]
Removed column 16 vascular leaf for transition, adult and juvenile leaves; removed extra assoc rows that were required for this
svn path=/; revision=222
zeamary [Thu, 6 Oct 2011 21:05:59 +0000 (21:05 +0000)]
vascular leaf removed from column 16 for juvenile, adult and transition leaf; extra rows also removed; date updated
svn path=/; revision=221
zeamary [Thu, 6 Oct 2011 21:01:44 +0000 (21:01 +0000)]
To be replaced with corrected file
svn path=/; revision=220
zeamary [Thu, 6 Oct 2011 20:58:52 +0000 (20:58 +0000)]
removes column 16 vascular leaf for adult, juvenile and transition leaf
removes some duplicate row
removes extra annotations to vascular leaf based on column 16 for above.
svn path=/; revision=219
zeamary [Thu, 6 Oct 2011 20:51:13 +0000 (20:51 +0000)]
To be replaced with new file
svn path=/; revision=218
projects / associations / .git / log