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tair [Tue, 1 Nov 2011 06:19:53 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=231
tair [Tue, 25 Oct 2011 06:21:51 +0000 (06:21 +0000)]
TAIR weekly commit
svn path=/; revision=230
tair [Tue, 25 Oct 2011 06:19:42 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=229
tair [Tue, 18 Oct 2011 06:22:12 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=228
tair [Tue, 18 Oct 2011 06:19:46 +0000 (06:19 +0000)]
TAIR weekly commit
svn path=/; revision=227
elserj [Thu, 13 Oct 2011 17:15:34 +0000 (17:15 +0000)]
Includes mapped classical maize gene names provided by CoGe (mapped by JP)
svn path=/; revision=226
cooperl [Wed, 12 Oct 2011 22:13:40 +0000 (22:13 +0000)]
Removing two of the MaizeGDB association files that are no longer being maintained.
svn path=/; revision=225
tair [Tue, 11 Oct 2011 06:22:39 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=224
tair [Tue, 11 Oct 2011 06:20:19 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=223
zeamary [Thu, 6 Oct 2011 21:10:37 +0000 (21:10 +0000)]
Removed column 16 vascular leaf for transition, adult and juvenile leaves; removed extra assoc rows that were required for this
svn path=/; revision=222
zeamary [Thu, 6 Oct 2011 21:05:59 +0000 (21:05 +0000)]
vascular leaf removed from column 16 for juvenile, adult and transition leaf; extra rows also removed; date updated
svn path=/; revision=221
zeamary [Thu, 6 Oct 2011 21:01:44 +0000 (21:01 +0000)]
To be replaced with corrected file
svn path=/; revision=220
zeamary [Thu, 6 Oct 2011 20:58:52 +0000 (20:58 +0000)]
removes column 16 vascular leaf for adult, juvenile and transition leaf
removes some duplicate row
removes extra annotations to vascular leaf based on column 16 for above.
svn path=/; revision=219
zeamary [Thu, 6 Oct 2011 20:51:13 +0000 (20:51 +0000)]
To be replaced with new file
svn path=/; revision=218
cooperl [Thu, 6 Oct 2011 18:47:45 +0000 (18:47 +0000)]
Adding physcomitrella association files to test_physco
svn path=/; revision=217
cooperl [Thu, 6 Oct 2011 00:05:22 +0000 (00:05 +0000)]
adding files from CRIBI to test_grape
svn path=/; revision=216
zeamary [Wed, 5 Oct 2011 15:39:58 +0000 (15:39 +0000)]
Gene Models from Kaeppler data updated for PUBMED ID and early fruit development for 2-10 days, considered dilatory in B73 kernel development and likely less than 10% size.
svn path=/; revision=215
zeamary [Wed, 5 Oct 2011 15:21:05 +0000 (15:21 +0000)]
Replaces PMID value with correct one. Annotation to current terms for pollen, anther, style. Annotation for extra, less granular terms, to accommodate PO requirements: vascular leaf, anther, tassel floret, ear floret.
svn path=/; revision=214
zeamary [Wed, 5 Oct 2011 15:13:47 +0000 (15:13 +0000)]
Adds new stocks; uses current PO terms for anther, etc. Adds extra associations for vascular leaf, anther, tassel floret, ear floret as now required.
svn path=/; revision=213
zeamary [Wed, 5 Oct 2011 15:11:11 +0000 (15:11 +0000)]
Adds 200 new genes, adds vascular leaf for all parts or types of leaf (juvenile, transition, adult), uses PO accessions for generic pollen, anther, style adding extra annotations for the parts in Zea.
svn path=/; revision=212
tair [Tue, 4 Oct 2011 06:25:16 +0000 (06:25 +0000)]
TAIR weekly commit
svn path=/; revision=211
tair [Tue, 4 Oct 2011 06:23:21 +0000 (06:23 +0000)]
TAIR weekly commit
svn path=/; revision=210
cooperl [Tue, 27 Sep 2011 23:10:18 +0000 (23:10 +0000)]
Adding the grape association files from CRIBI (Nicola Vitulo)
svn path=/; revision=209
tair [Tue, 27 Sep 2011 06:22:28 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=208
tair [Tue, 27 Sep 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=207
tair [Tue, 20 Sep 2011 06:22:30 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=206
tair [Tue, 20 Sep 2011 06:20:36 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=205
zeamary [Mon, 19 Sep 2011 22:18:02 +0000 (22:18 +0000)]
This file removed and is encompassed in the po_anatomy_genemodel_zea_MaizeGDB.assoc file.
svn path=/; revision=204
zeamary [Mon, 19 Sep 2011 22:11:27 +0000 (22:11 +0000)]
This updated file removes white space, replaces MaizeGDBID with MaizeGDB in Reference pipe, removes some rows with null values for name.
svn path=/; revision=203
zeamary [Mon, 19 Sep 2011 21:55:43 +0000 (21:55 +0000)]
To be replaced with file corrected for MaizeGDBID, and some rows with null values of gene model names.
svn path=/; revision=202
zeamary [Mon, 19 Sep 2011 21:14:15 +0000 (21:14 +0000)]
Kaeppler Gene Atlas Temporal associations
svn path=/; revision=201
pankaj [Fri, 16 Sep 2011 18:48:51 +0000 (18:48 +0000)]
replaced ASPECT column value 'S' with 'A' to be consistent
svn path=/; revision=200
zeamary [Thu, 15 Sep 2011 22:48:21 +0000 (22:48 +0000)]
Extra copy slipped in by accident.
svn path=/; revision=199
zeamary [Thu, 15 Sep 2011 22:40:30 +0000 (22:40 +0000)]
This concatenates previous file for silks only with all Kaeppler Gene Atlas annotations. I pulled the older files out and just did an upload. The SVN was unhappy with the amount of memory allocated on my side it seems.
svn path=/; revision=198
zeamary [Thu, 15 Sep 2011 22:28:10 +0000 (22:28 +0000)]
Removing small file concatenated to new one. Not enough memory to do versioning - or so it claims.
svn path=/; revision=197
zeamary [Thu, 15 Sep 2011 22:17:10 +0000 (22:17 +0000)]
Adding concatenated previous file and new.
svn path=/; revision=196
zeamary [Thu, 15 Sep 2011 20:56:32 +0000 (20:56 +0000)]
Change file name
svn path=/; revision=195
tair [Tue, 13 Sep 2011 06:22:37 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=194
tair [Tue, 13 Sep 2011 06:20:12 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=193
tair [Tue, 6 Sep 2011 06:24:44 +0000 (06:24 +0000)]
TAIR weekly commit
svn path=/; revision=192
tair [Tue, 6 Sep 2011 06:21:32 +0000 (06:21 +0000)]
TAIR weekly commit
svn path=/; revision=191
tair [Tue, 30 Aug 2011 06:25:45 +0000 (06:25 +0000)]
TAIR weekly commit
svn path=/; revision=190
tair [Tue, 30 Aug 2011 06:22:29 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=189
cooperl [Thu, 25 Aug 2011 22:33:17 +0000 (22:33 +0000)]
fixed the columns in Maize association file
svn path=/; revision=188
pankaj [Wed, 24 Aug 2011 18:41:00 +0000 (18:41 +0000)]
fixed 'S' in caps for aspect.
svn path=/; revision=187
pankaj [Wed, 24 Aug 2011 18:39:36 +0000 (18:39 +0000)]
Includes root and fruit specific mRNA expression data and the annotated growth stages using PO (data published in PMID:
21186353 (genome paper)).
svn path=/; revision=186
pankaj [Tue, 23 Aug 2011 19:20:43 +0000 (19:20 +0000)]
Includes root and fruit specific mRNA expression data published in PMID:
21186353 (genome paper).
svn path=/; revision=185
tair [Tue, 23 Aug 2011 06:22:40 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=184
tair [Tue, 23 Aug 2011 06:20:23 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=183
tair [Tue, 16 Aug 2011 06:22:24 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=182
tair [Tue, 16 Aug 2011 06:20:18 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=181
zeamary [Thu, 11 Aug 2011 19:38:32 +0000 (19:38 +0000)]
Kaeppler Maize Atlas - only associations to the term silk, with the column 16 used.
svn path=/; revision=180
tair [Tue, 9 Aug 2011 06:22:28 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=179
tair [Tue, 9 Aug 2011 06:20:21 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=178
tair [Tue, 2 Aug 2011 06:22:44 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=177
tair [Tue, 2 Aug 2011 06:20:29 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=176
tair [Tue, 26 Jul 2011 06:22:32 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=175
tair [Tue, 26 Jul 2011 06:20:18 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=174
tair [Tue, 19 Jul 2011 06:24:06 +0000 (06:24 +0000)]
TAIR weekly commit
svn path=/; revision=173
tair [Tue, 19 Jul 2011 06:21:26 +0000 (06:21 +0000)]
TAIR weekly commit
svn path=/; revision=172
tair [Tue, 12 Jul 2011 17:54:37 +0000 (17:54 +0000)]
TAIR weekly commit
svn path=/; revision=171
tair [Tue, 12 Jul 2011 17:52:14 +0000 (17:52 +0000)]
TAIR weekly commit
svn path=/; revision=170
elserj [Fri, 27 May 2011 14:44:24 +0000 (14:44 +0000)]
Added physco assoc file
svn path=/; revision=169
elserj [Wed, 25 May 2011 01:08:22 +0000 (01:08 +0000)]
Oops, was a bit overzealous with the tab removal
svn path=/; revision=168
elserj [Wed, 25 May 2011 00:52:50 +0000 (00:52 +0000)]
Think I correctly fixed the extra tabs this time.
svn path=/; revision=167
elserj [Wed, 25 May 2011 00:29:10 +0000 (00:29 +0000)]
Reverse previous commit, columns were fixed, but extra quotes were accidentally added.
svn path=/; revision=166
elserj [Wed, 25 May 2011 00:09:27 +0000 (00:09 +0000)]
Fix extra tabs in file
svn path=/; revision=165
cooperl [Fri, 20 May 2011 21:13:30 +0000 (21:13 +0000)]
Copied 5 annotations from the po_anatomy_gene_arabidopsis_tair.assoc
file on seedling PO:
0008037 to this file and replaced the obsolete term
with seedling growth stage PO:
0007131.
svn path=/; revision=164
cooperl [Fri, 20 May 2011 19:06:43 +0000 (19:06 +0000)]
Updated the TAIR anatomy and temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=163
cooperl [Thu, 19 May 2011 23:31:56 +0000 (23:31 +0000)]
Updated the MaizeGDB, and TAIR temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=162
cooperl [Wed, 18 May 2011 18:52:23 +0000 (18:52 +0000)]
Updated the TAIR association files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=161
cooperl [Wed, 18 May 2011 18:49:03 +0000 (18:49 +0000)]
Updated the MaizeGDB, Gramene and SGN files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=160
tair [Tue, 17 May 2011 06:22:21 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=159
tair [Tue, 17 May 2011 06:20:23 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=158
tair [Tue, 10 May 2011 06:22:35 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=157
tair [Tue, 10 May 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
svn path=/; revision=156
tair [Tue, 3 May 2011 06:22:38 +0000 (06:22 +0000)]
TAIR weekly commit
svn path=/; revision=155
tair [Tue, 3 May 2011 06:20:14 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 26 Apr 2011 06:22:27 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 26 Apr 2011 06:20:09 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Apr 2011 06:23:22 +0000 (06:23 +0000)]
TAIR weekly commit
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tair [Tue, 19 Apr 2011 06:21:08 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 12 Apr 2011 06:22:21 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 12 Apr 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 5 Apr 2011 06:23:01 +0000 (06:23 +0000)]
TAIR weekly commit
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tair [Tue, 5 Apr 2011 06:20:20 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 29 Mar 2011 06:22:38 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 29 Mar 2011 06:20:35 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 22 Mar 2011 06:21:40 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 22 Mar 2011 06:19:43 +0000 (06:19 +0000)]
TAIR weekly commit
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tair [Tue, 15 Mar 2011 06:21:49 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 15 Mar 2011 06:19:46 +0000 (06:19 +0000)]
TAIR weekly commit
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tair [Tue, 8 Mar 2011 07:22:31 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 8 Mar 2011 07:20:14 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 1 Mar 2011 07:22:37 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 1 Mar 2011 07:20:41 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 22 Feb 2011 07:22:05 +0000 (07:22 +0000)]
TAIR weekly commit
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tair [Tue, 22 Feb 2011 07:20:02 +0000 (07:20 +0000)]
TAIR weekly commit
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tair [Tue, 15 Feb 2011 07:24:32 +0000 (07:24 +0000)]
TAIR weekly commit
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tair [Tue, 15 Feb 2011 07:21:21 +0000 (07:21 +0000)]
TAIR weekly commit
svn path=/; revision=132
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