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zeamary [Wed, 5 Oct 2011 15:21:05 +0000 (15:21 +0000)]
Replaces PMID value with correct one. Annotation to current terms for pollen, anther, style. Annotation for extra, less granular terms, to accommodate PO requirements: vascular leaf, anther, tassel floret, ear floret.
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zeamary [Wed, 5 Oct 2011 15:13:47 +0000 (15:13 +0000)]
Adds new stocks; uses current PO terms for anther, etc. Adds extra associations for vascular leaf, anther, tassel floret, ear floret as now required.
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zeamary [Wed, 5 Oct 2011 15:11:11 +0000 (15:11 +0000)]
Adds 200 new genes, adds vascular leaf for all parts or types of leaf (juvenile, transition, adult), uses PO accessions for generic pollen, anther, style adding extra annotations for the parts in Zea.
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tair [Tue, 4 Oct 2011 06:25:16 +0000 (06:25 +0000)]
TAIR weekly commit
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tair [Tue, 4 Oct 2011 06:23:21 +0000 (06:23 +0000)]
TAIR weekly commit
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cooperl [Tue, 27 Sep 2011 23:10:18 +0000 (23:10 +0000)]
Adding the grape association files from CRIBI (Nicola Vitulo)
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tair [Tue, 27 Sep 2011 06:22:28 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 27 Sep 2011 06:20:08 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 20 Sep 2011 06:22:30 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 20 Sep 2011 06:20:36 +0000 (06:20 +0000)]
TAIR weekly commit
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zeamary [Mon, 19 Sep 2011 22:18:02 +0000 (22:18 +0000)]
This file removed and is encompassed in the po_anatomy_genemodel_zea_MaizeGDB.assoc file.
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zeamary [Mon, 19 Sep 2011 22:11:27 +0000 (22:11 +0000)]
This updated file removes white space, replaces MaizeGDBID with MaizeGDB in Reference pipe, removes some rows with null values for name.
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zeamary [Mon, 19 Sep 2011 21:55:43 +0000 (21:55 +0000)]
To be replaced with file corrected for MaizeGDBID, and some rows with null values of gene model names.
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zeamary [Mon, 19 Sep 2011 21:14:15 +0000 (21:14 +0000)]
Kaeppler Gene Atlas Temporal associations
svn path=/; revision=201
pankaj [Fri, 16 Sep 2011 18:48:51 +0000 (18:48 +0000)]
replaced ASPECT column value 'S' with 'A' to be consistent
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zeamary [Thu, 15 Sep 2011 22:48:21 +0000 (22:48 +0000)]
Extra copy slipped in by accident.
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zeamary [Thu, 15 Sep 2011 22:40:30 +0000 (22:40 +0000)]
This concatenates previous file for silks only with all Kaeppler Gene Atlas annotations. I pulled the older files out and just did an upload. The SVN was unhappy with the amount of memory allocated on my side it seems.
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zeamary [Thu, 15 Sep 2011 22:28:10 +0000 (22:28 +0000)]
Removing small file concatenated to new one. Not enough memory to do versioning - or so it claims.
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zeamary [Thu, 15 Sep 2011 22:17:10 +0000 (22:17 +0000)]
Adding concatenated previous file and new.
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zeamary [Thu, 15 Sep 2011 20:56:32 +0000 (20:56 +0000)]
Change file name
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tair [Tue, 13 Sep 2011 06:22:37 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 13 Sep 2011 06:20:12 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 6 Sep 2011 06:24:44 +0000 (06:24 +0000)]
TAIR weekly commit
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tair [Tue, 6 Sep 2011 06:21:32 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 30 Aug 2011 06:25:45 +0000 (06:25 +0000)]
TAIR weekly commit
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tair [Tue, 30 Aug 2011 06:22:29 +0000 (06:22 +0000)]
TAIR weekly commit
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cooperl [Thu, 25 Aug 2011 22:33:17 +0000 (22:33 +0000)]
fixed the columns in Maize association file
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pankaj [Wed, 24 Aug 2011 18:41:00 +0000 (18:41 +0000)]
fixed 'S' in caps for aspect.
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pankaj [Wed, 24 Aug 2011 18:39:36 +0000 (18:39 +0000)]
Includes root and fruit specific mRNA expression data and the annotated growth stages using PO (data published in PMID:
21186353 (genome paper)).
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pankaj [Tue, 23 Aug 2011 19:20:43 +0000 (19:20 +0000)]
Includes root and fruit specific mRNA expression data published in PMID:
21186353 (genome paper).
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tair [Tue, 23 Aug 2011 06:22:40 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 23 Aug 2011 06:20:23 +0000 (06:20 +0000)]
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tair [Tue, 16 Aug 2011 06:22:24 +0000 (06:22 +0000)]
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tair [Tue, 16 Aug 2011 06:20:18 +0000 (06:20 +0000)]
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zeamary [Thu, 11 Aug 2011 19:38:32 +0000 (19:38 +0000)]
Kaeppler Maize Atlas - only associations to the term silk, with the column 16 used.
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tair [Tue, 9 Aug 2011 06:22:28 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 9 Aug 2011 06:20:21 +0000 (06:20 +0000)]
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tair [Tue, 2 Aug 2011 06:22:44 +0000 (06:22 +0000)]
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tair [Tue, 2 Aug 2011 06:20:29 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 26 Jul 2011 06:22:32 +0000 (06:22 +0000)]
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tair [Tue, 26 Jul 2011 06:20:18 +0000 (06:20 +0000)]
TAIR weekly commit
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tair [Tue, 19 Jul 2011 06:24:06 +0000 (06:24 +0000)]
TAIR weekly commit
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tair [Tue, 19 Jul 2011 06:21:26 +0000 (06:21 +0000)]
TAIR weekly commit
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tair [Tue, 12 Jul 2011 17:54:37 +0000 (17:54 +0000)]
TAIR weekly commit
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tair [Tue, 12 Jul 2011 17:52:14 +0000 (17:52 +0000)]
TAIR weekly commit
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elserj [Fri, 27 May 2011 14:44:24 +0000 (14:44 +0000)]
Added physco assoc file
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elserj [Wed, 25 May 2011 01:08:22 +0000 (01:08 +0000)]
Oops, was a bit overzealous with the tab removal
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elserj [Wed, 25 May 2011 00:52:50 +0000 (00:52 +0000)]
Think I correctly fixed the extra tabs this time.
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elserj [Wed, 25 May 2011 00:29:10 +0000 (00:29 +0000)]
Reverse previous commit, columns were fixed, but extra quotes were accidentally added.
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elserj [Wed, 25 May 2011 00:09:27 +0000 (00:09 +0000)]
Fix extra tabs in file
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cooperl [Fri, 20 May 2011 21:13:30 +0000 (21:13 +0000)]
Copied 5 annotations from the po_anatomy_gene_arabidopsis_tair.assoc
file on seedling PO:
0008037 to this file and replaced the obsolete term
with seedling growth stage PO:
0007131.
svn path=/; revision=164
cooperl [Fri, 20 May 2011 19:06:43 +0000 (19:06 +0000)]
Updated the TAIR anatomy and temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=163
cooperl [Thu, 19 May 2011 23:31:56 +0000 (23:31 +0000)]
Updated the MaizeGDB, and TAIR temporal files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=162
cooperl [Wed, 18 May 2011 18:52:23 +0000 (18:52 +0000)]
Updated the TAIR association files by reassigning annotations
to new terms from obsoleted ones.
svn path=/; revision=161
cooperl [Wed, 18 May 2011 18:49:03 +0000 (18:49 +0000)]
Updated the MaizeGDB, Gramene and SGN files by reassigning annotations
to new terms from obsoleted ones.
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tair [Tue, 17 May 2011 06:22:21 +0000 (06:22 +0000)]
TAIR weekly commit
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tair [Tue, 17 May 2011 06:20:23 +0000 (06:20 +0000)]
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tair [Tue, 10 May 2011 06:22:35 +0000 (06:22 +0000)]
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tair [Tue, 3 May 2011 06:22:38 +0000 (06:22 +0000)]
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cooperl [Thu, 13 Jan 2011 04:51:54 +0000 (04:51 +0000)]
S. tuberosum
- 1 annotation moved from pollen tube (PO:
0006345)to new term pollen
tube cell (PO:
0025195)
svn path=/; revision=121
cooperl [Thu, 13 Jan 2011 04:41:24 +0000 (04:41 +0000)]
Changes to gramene gene association file 1-12-11
- 1 annotation moved from pollen tube (PO:
0006345)to nwe term pollen
tube cell (PO:
0025195)
- 1 annotation moved from primary root elongation zone (PO:
0003003)to
primary root elongation zone (PO:
0025257) (new PO id)
- 1 annotation moved from root hair (PO:
0000256) to root hair cell
(PO:
0000256) (same PO id)
- 1 annotation moved from elongation zone (PO:
0020125) to new term root
elongation zone (PO:
0025181)
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tair [Wed, 12 Jan 2011 22:46:46 +0000 (22:46 +0000)]
TAIR weekly commit
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tair [Tue, 11 Jan 2011 07:23:36 +0000 (07:23 +0000)]
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tair [Tue, 11 Jan 2011 07:21:27 +0000 (07:21 +0000)]
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elserj [Tue, 2 Nov 2010 22:34:26 +0000 (22:34 +0000)]
Fix random line breaks
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