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preecej [Tue, 31 Jan 2012 00:09:44 +0000 (00:09 +0000)]
Moved PO web service calls to application.properties file; added lookup label focus listener for PO term details call
svn path=/; revision=287
athreyab [Mon, 30 Jan 2012 22:04:22 +0000 (22:04 +0000)]
removed sample data files and other unwanted script files
svn path=/; revision=286
elserj [Mon, 30 Jan 2012 21:46:02 +0000 (21:46 +0000)]
Updated for newer version of physcomitrella fasta file
svn path=/; revision=285
lingutln [Mon, 30 Jan 2012 21:23:23 +0000 (21:23 +0000)]
Layout changes. Done by Nikhil.
svn path=/; revision=284
lingutln [Mon, 30 Jan 2012 00:03:11 +0000 (00:03 +0000)]
ImageMap functionality for multiple labels. Done by Nikhil.
svn path=/; revision=283
athreyab [Sun, 29 Jan 2012 19:11:02 +0000 (19:11 +0000)]
support for looking up existing species information
svn path=/; revision=282
preecej [Thu, 26 Jan 2012 23:50:30 +0000 (23:50 +0000)]
Stubbed out termDetailTable control on the right panel
svn path=/; revision=281
lingutln [Thu, 26 Jan 2012 19:42:18 +0000 (19:42 +0000)]
Multi segment saving to imagemaps (partially done). Done by Nikhil.
svn path=/; revision=280
athreyab [Thu, 26 Jan 2012 01:50:36 +0000 (01:50 +0000)]
addressed a few review comments from Justin
svn path=/; revision=279
elserj [Thu, 26 Jan 2012 00:11:32 +0000 (00:11 +0000)]
Add Venn diagram creation program to svn
svn path=/; revision=278
preecej [Wed, 25 Jan 2012 22:34:24 +0000 (22:34 +0000)]
Renamed bar3 (toolbar 3) to termLookupBar, added accessionId attribute to SegmentationMask, parsed term accession id from lookup service and populated accessionId
svn path=/; revision=277
elserj [Wed, 25 Jan 2012 00:20:51 +0000 (00:20 +0000)]
Added dbconnect_auto subroutine to allow for db connection with supplied credentials, instead of asking for them. Take care to only use in case of pulling credentials from external file (not in svn)
svn path=/; revision=276
lingutln [Tue, 24 Jan 2012 22:14:41 +0000 (22:14 +0000)]
Regular commits. Done by Nikhil.
svn path=/; revision=275
athreyab [Tue, 24 Jan 2012 19:51:05 +0000 (19:51 +0000)]
added a few comments and support to check if the interaction already in tsv script
svn path=/; revision=274
athreyab [Tue, 24 Jan 2012 19:04:36 +0000 (19:04 +0000)]
fixed the accession_right_id issue.
svn path=/; revision=273
lingutln [Mon, 23 Jan 2012 23:07:57 +0000 (23:07 +0000)]
Image map for single segment.Done by Nikhil.
svn path=/; revision=272
lingutln [Mon, 23 Jan 2012 19:10:55 +0000 (19:10 +0000)]
Multiple segmentation and labelling. Done by Nikhil.
svn path=/; revision=271
athreyab [Mon, 23 Jan 2012 01:29:52 +0000 (01:29 +0000)]
modified interaction.pl to suit both sif and tsv format
svn path=/; revision=270
athreyab [Mon, 23 Jan 2012 00:03:16 +0000 (00:03 +0000)]
Removing unwanted files
svn path=/; revision=269
athreyab [Mon, 23 Jan 2012 00:00:18 +0000 (00:00 +0000)]
more changes
svn path=/; revision=268
lingutln [Sat, 21 Jan 2012 02:41:15 +0000 (02:41 +0000)]
Colors for segments and single segment labelling. Done by Nikhil.
svn path=/; revision=267
lingutln [Fri, 20 Jan 2012 19:10:50 +0000 (19:10 +0000)]
Latest commits.Done by Nikhil.
svn path=/; revision=266
lingutln [Wed, 18 Jan 2012 23:06:36 +0000 (23:06 +0000)]
Border combined with segment. Done by Nikhil.
svn path=/; revision=265
lingutln [Tue, 17 Jan 2012 23:27:54 +0000 (23:27 +0000)]
Labeling independent segments. Done by Nikhil.
svn path=/; revision=264
lingutln [Sat, 14 Jan 2012 00:40:47 +0000 (00:40 +0000)]
Working functionality for Layered segmentation. Done by Nikhil.
svn path=/; revision=263
lingutln [Thu, 12 Jan 2012 23:40:35 +0000 (23:40 +0000)]
Separated out the SegmentationObject from SegmentationMask. Done by Nikhil.
svn path=/; revision=262
lingutln [Wed, 11 Jan 2012 23:14:15 +0000 (23:14 +0000)]
Independent segment enabling functionality. Done by Nikhil.
svn path=/; revision=261
lingutln [Tue, 10 Jan 2012 23:39:29 +0000 (23:39 +0000)]
Labeling mode functionality(left click). Done by Nikhil.
svn path=/; revision=260
athreyab [Tue, 10 Jan 2012 18:15:15 +0000 (18:15 +0000)]
interaction path- initial commit
svn path=/; revision=259
lingutln [Tue, 10 Jan 2012 00:13:45 +0000 (00:13 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=258
lingutln [Mon, 9 Jan 2012 23:35:10 +0000 (23:35 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=257
lingutln [Mon, 9 Jan 2012 02:35:50 +0000 (02:35 +0000)]
Layered Segmentation. Done by Nikhil.
svn path=/; revision=256
preecej [Sat, 7 Jan 2012 02:11:07 +0000 (02:11 +0000)]
Fixed white-box paralogy bug (caused to even-numbered max paralogs);
cleanly separated heat-map f(x) from custom BoxColor; spread heat-map
increments more evenly across the gradient via fixed outer bounds
svn path=/; revision=255
elserj [Fri, 6 Jan 2012 18:14:16 +0000 (18:14 +0000)]
Update to spelled out names, and fix if translation already in file
svn path=/; revision=254
lingutln [Thu, 5 Jan 2012 19:57:09 +0000 (19:57 +0000)]
svn path=/; revision=253
lingutln [Thu, 5 Jan 2012 09:06:11 +0000 (09:06 +0000)]
svn path=/; revision=252
lingutln [Thu, 5 Jan 2012 07:53:37 +0000 (07:53 +0000)]
svn path=/; revision=251
lingutln [Wed, 4 Jan 2012 20:50:36 +0000 (20:50 +0000)]
Layered Segmentation related. Done by Nikhil.
svn path=/; revision=250
lingutln [Tue, 3 Jan 2012 23:02:06 +0000 (23:02 +0000)]
Layering of Segments.Done by Nikhil.
svn path=/; revision=249
lingutln [Tue, 3 Jan 2012 20:00:50 +0000 (20:00 +0000)]
Added new icon for specifying to form a segment. Done by Nikhil.
svn path=/; revision=248
lingutln [Tue, 3 Jan 2012 19:34:43 +0000 (19:34 +0000)]
Modified popup Exception. Done by Nikhil.
svn path=/; revision=247
lingutln [Sun, 1 Jan 2012 01:44:50 +0000 (01:44 +0000)]
Modified Layout for popup dialog. Done by Nikhil.
svn path=/; revision=246
lingutln [Fri, 30 Dec 2011 23:01:28 +0000 (23:01 +0000)]
Popup dialog functionality. Done by Nikhil.
svn path=/; revision=245
lingutln [Thu, 29 Dec 2011 22:58:48 +0000 (22:58 +0000)]
UI for pop up label and modified the getLabels functionality for Annotation combo box. Done by Nikhil.
svn path=/; revision=244
lingutln [Wed, 28 Dec 2011 22:51:04 +0000 (22:51 +0000)]
Popup Label functionality. Done by Nikhil.
svn path=/; revision=243
lingutln [Wed, 28 Dec 2011 08:45:55 +0000 (08:45 +0000)]
Pop up listener functionality. Done by Nikhil.
svn path=/; revision=242
lingutln [Tue, 27 Dec 2011 22:58:54 +0000 (22:58 +0000)]
PO:ID instead of parent, Layout change, cursor change and slight modifications. Done by Nikhil.
svn path=/; revision=241
lingutln [Tue, 27 Dec 2011 03:12:35 +0000 (03:12 +0000)]
Layout Modifications. Done by Nikhil.
svn path=/; revision=240
lingutln [Mon, 26 Dec 2011 22:45:33 +0000 (22:45 +0000)]
Toggling between segmentation and labeling functionality. Done by Nikhil.
svn path=/; revision=239
lingutln [Mon, 26 Dec 2011 21:55:51 +0000 (21:55 +0000)]
Done by Nikhil.
svn path=/; revision=238
lingutln [Mon, 26 Dec 2011 03:18:08 +0000 (03:18 +0000)]
Implemented functionality of toggling between Segmentation mode and labelling mode. Done by Nikhil.
svn path=/; revision=237
lingutln [Fri, 23 Dec 2011 21:02:27 +0000 (21:02 +0000)]
Added Toggle Between Segmentation and Labelling icon in the menu bar. Done by Nikhil.
svn path=/; revision=236
lingutln [Fri, 23 Dec 2011 19:15:30 +0000 (19:15 +0000)]
Modified Enable/Disable functionality. Done by Nikhil.
svn path=/; revision=235
lingutln [Thu, 22 Dec 2011 23:30:21 +0000 (23:30 +0000)]
svn path=/; revision=234
lingutln [Thu, 22 Dec 2011 23:27:43 +0000 (23:27 +0000)]
Modifications to Enable/Disable functionality. Done by Nikhil.
svn path=/; revision=233
lingutln [Thu, 22 Dec 2011 22:26:25 +0000 (22:26 +0000)]
Down arrow functionality for annotation combo box. Done by Nikhil.
svn path=/; revision=232
lingutln [Tue, 20 Dec 2011 22:58:34 +0000 (22:58 +0000)]
svn path=/; revision=231
preecej [Mon, 19 Dec 2011 21:29:45 +0000 (21:29 +0000)]
svn path=/; revision=230
preecej [Mon, 19 Dec 2011 21:29:21 +0000 (21:29 +0000)]
Added to hold jar's assoc. w/ project
svn path=/; revision=229
lingutln [Mon, 19 Dec 2011 19:00:19 +0000 (19:00 +0000)]
Modifications, done by Nikhil.
svn path=/; revision=228
lingutln [Mon, 19 Dec 2011 03:47:37 +0000 (03:47 +0000)]
Minor change in commit.
svn path=/; revision=227
lingutln [Mon, 19 Dec 2011 03:26:46 +0000 (03:26 +0000)]
Implemented Tooltip text functionality. Done by Nikhil.
svn path=/; revision=226
lingutln [Sat, 17 Dec 2011 00:07:09 +0000 (00:07 +0000)]
Latest commit. Done by Nikhil.
svn path=/; revision=225
lingutln [Fri, 16 Dec 2011 21:54:59 +0000 (21:54 +0000)]
Latest Commit, done by Nikhil.
svn path=/; revision=224
lingutln [Tue, 13 Dec 2011 22:54:54 +0000 (22:54 +0000)]
Annotation Project with new structure of packages.
svn path=/; revision=223
lingutln [Tue, 13 Dec 2011 22:51:31 +0000 (22:51 +0000)]
Initial import.
svn path=/; revision=222
elserj [Tue, 13 Dec 2011 21:05:27 +0000 (21:05 +0000)]
Make sure in alphabetical order and add new species
svn path=/; revision=221
lingutln [Mon, 12 Dec 2011 21:33:45 +0000 (21:33 +0000)]
Added auto-enable/disable functionality to the annotation combo and assign button. Done by Nikhil.
svn path=/; revision=220
lingutln [Wed, 23 Nov 2011 21:02:47 +0000 (21:02 +0000)]
Save functionality. Done by Nikhil.
svn path=/; revision=219
elserj [Sat, 19 Nov 2011 00:06:37 +0000 (00:06 +0000)]
Added Venn diagram creation script, to be used with supercluster database
svn path=/; revision=218
lingutln [Thu, 17 Nov 2011 00:06:58 +0000 (00:06 +0000)]
Added some Modification to annotate box. Done by Nikhil.
svn path=/; revision=217
preecej [Tue, 15 Nov 2011 00:59:17 +0000 (00:59 +0000)]
Changed "term_name" to "is_synonym_of" in PO_term_search_response
svn path=/; revision=216
preecej [Mon, 14 Nov 2011 21:23:17 +0000 (21:23 +0000)]
Added more querystring options
svn path=/; revision=215
preecej [Mon, 14 Nov 2011 20:22:05 +0000 (20:22 +0000)]
Revised to make generically available via plantontology.org, also to add
synonym searching functionality
svn path=/; revision=214
lingutln [Mon, 14 Nov 2011 19:21:05 +0000 (19:21 +0000)]
Adding a label functionality. Done by Nikhil.
svn path=/; revision=213
lingutln [Mon, 7 Nov 2011 19:52:57 +0000 (19:52 +0000)]
Uploaded initial version of image annotation project
svn path=/; revision=212
rajar [Wed, 2 Nov 2011 21:46:59 +0000 (21:46 +0000)]
removed one file
svn path=/; revision=211
rajar [Wed, 2 Nov 2011 21:42:55 +0000 (21:42 +0000)]
Script to run TMHMM application
svn path=/; revision=210
rajar [Wed, 2 Nov 2011 21:41:32 +0000 (21:41 +0000)]
deleted
svn path=/; revision=209
rajar [Wed, 2 Nov 2011 21:39:40 +0000 (21:39 +0000)]
COMMAND TO RUN PREDOTAR
svn path=/; revision=208
rajar [Wed, 2 Nov 2011 21:33:03 +0000 (21:33 +0000)]
Script to run TMHMM application
svn path=/; revision=207
rajar [Wed, 2 Nov 2011 21:14:26 +0000 (21:14 +0000)]
Script to run TARGETP Aplication
svn path=/; revision=206
rajar [Wed, 2 Nov 2011 21:06:45 +0000 (21:06 +0000)]
svn path=/; revision=205
rajar [Wed, 2 Nov 2011 20:54:43 +0000 (20:54 +0000)]
Script to run TMHMM Application
svn path=/; revision=204
rajar [Wed, 2 Nov 2011 20:53:06 +0000 (20:53 +0000)]
File removed
svn path=/; revision=203
rajar [Wed, 2 Nov 2011 20:14:25 +0000 (20:14 +0000)]
Script to run Targetp application
svn path=/; revision=202
rajar [Tue, 1 Nov 2011 20:24:46 +0000 (20:24 +0000)]
Script to run TMMHMM
svn path=/; revision=201
preecej [Wed, 26 Oct 2011 21:45:53 +0000 (21:45 +0000)]
Cleanup...
svn path=/; revision=200
preecej [Wed, 26 Oct 2011 21:45:24 +0000 (21:45 +0000)]
Cleanup...
svn path=/; revision=199
preecej [Wed, 26 Oct 2011 21:33:46 +0000 (21:33 +0000)]
Cleanup time...
svn path=/; revision=198
lingutln [Tue, 25 Oct 2011 22:29:29 +0000 (22:29 +0000)]
test
svn path=/; revision=197
elserj [Tue, 25 Oct 2011 22:14:52 +0000 (22:14 +0000)]
restructuring of the jaiswal lab svn repo
svn path=/; revision=196
foxsa [Tue, 25 Oct 2011 20:24:16 +0000 (20:24 +0000)]
test file added 13:24
svn path=/; revision=195
foxsa [Tue, 25 Oct 2011 20:21:48 +0000 (20:21 +0000)]
test file added
svn path=/; revision=194
foxsa [Tue, 25 Oct 2011 20:20:26 +0000 (20:20 +0000)]
svn path=/; revision=193
foxsa [Tue, 25 Oct 2011 20:19:38 +0000 (20:19 +0000)]
svn path=/; revision=192
foxsa [Tue, 25 Oct 2011 20:15:50 +0000 (20:15 +0000)]
modified by sam fox
svn path=/; revision=191
preecej [Wed, 19 Oct 2011 00:11:18 +0000 (00:11 +0000)]
Mod'd the heat map "temperature" to apply evenly to all grouped paralogs that
map to a single original gene. This is clearer for the user.
svn path=/; revision=190
preecej [Tue, 18 Oct 2011 19:01:19 +0000 (19:01 +0000)]
update doc
svn path=/; revision=189
preecej [Tue, 18 Oct 2011 00:31:22 +0000 (00:31 +0000)]
Heat map feature complete.
svn path=/; revision=188
projects / old-jaiswallab-svn / .git / log