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associations/.git
3 days agoFix incorrect aspect after obsolete update main origin/HEAD origin/main
Justin Elser [Thu, 11 Dec 2025 19:47:42 +0000 (11:47 -0800)]
Fix incorrect aspect after obsolete update

3 days agoUpdate latest batch of GO obsoletes
Justin Elser [Thu, 11 Dec 2025 18:59:45 +0000 (10:59 -0800)]
Update latest batch of GO obsoletes

5 weeks agoFix extra spaces
Justin Elser [Wed, 5 Nov 2025 23:50:51 +0000 (15:50 -0800)]
Fix extra spaces

6 weeks agoFixed name on Oryzabase annotation file
Laurel Cooper [Fri, 31 Oct 2025 00:10:00 +0000 (18:10 -0600)]
Fixed name on Oryzabase annotation file

6 weeks agoFix GAF version header
Justin Elser [Thu, 30 Oct 2025 22:25:35 +0000 (15:25 -0700)]
Fix GAF version header

6 weeks agoFixed one reference
Laurel Cooper [Wed, 29 Oct 2025 19:30:49 +0000 (13:30 -0600)]
Fixed one reference

6 weeks agoFixed DOI
Laurel Cooper [Tue, 28 Oct 2025 22:20:14 +0000 (16:20 -0600)]
Fixed DOI

6 weeks agoFixing xrefs
Laurel Cooper [Tue, 28 Oct 2025 22:04:16 +0000 (16:04 -0600)]
Fixing xrefs

6 weeks agoCleaning up spurious annotations
Laurel Cooper [Mon, 27 Oct 2025 21:38:35 +0000 (15:38 -0600)]
Cleaning up spurious annotations

6 weeks agoFixed a few more references
Laurel Cooper [Mon, 27 Oct 2025 18:32:54 +0000 (12:32 -0600)]
Fixed a few more references

6 weeks agoUpdating references
Laurel Cooper [Mon, 27 Oct 2025 16:28:35 +0000 (10:28 -0600)]
Updating references

7 weeks agoUpdating references
Laurel Cooper [Fri, 24 Oct 2025 22:09:34 +0000 (16:09 -0600)]
Updating references

7 weeks agoMoving duplicated QTL files to a subfolder
Laurel Cooper [Fri, 24 Oct 2025 19:14:23 +0000 (13:14 -0600)]
Moving duplicated QTL files to a subfolder

7 weeks agoAdding new Oat QTL annotations from GrainGenes
Laurel Cooper [Thu, 23 Oct 2025 18:02:21 +0000 (12:02 -0600)]
Adding new Oat QTL annotations from GrainGenes

7 weeks agoFixed taxon ID
Laurel Cooper [Mon, 20 Oct 2025 23:23:55 +0000 (17:23 -0600)]
Fixed taxon ID

7 weeks agoAdding new files and fixing synonyms
Laurel Cooper [Mon, 20 Oct 2025 21:48:05 +0000 (15:48 -0600)]
Adding new files and fixing synonyms

7 weeks agoFixing synonyms
Laurel Cooper [Mon, 20 Oct 2025 19:53:34 +0000 (13:53 -0600)]
Fixing synonyms

8 weeks agoFixed DB ID for QTL
Laurel Cooper [Thu, 16 Oct 2025 21:54:45 +0000 (15:54 -0600)]
Fixed DB ID for QTL

8 weeks agoFixing blank references
Laurel Cooper [Thu, 16 Oct 2025 17:48:13 +0000 (11:48 -0600)]
Fixing blank references

8 weeks agoChanged evidence code from IMP to IC
Laurel Cooper [Wed, 15 Oct 2025 17:17:41 +0000 (11:17 -0600)]
Changed evidence code from IMP to IC

8 weeks agoFixing publication xrefs
Laurel Cooper [Wed, 15 Oct 2025 17:15:58 +0000 (11:15 -0600)]
Fixing publication xrefs

2 months agoReplaced Gramene ref GR_REF:11453 with GR_REF:11089
Laurel Cooper [Mon, 13 Oct 2025 21:57:48 +0000 (15:57 -0600)]
Replaced Gramene ref GR_REF:11453 with GR_REF:11089

2 months agoMoved annotations on Unknown exp to field study
Laurel Cooper [Mon, 13 Oct 2025 18:27:52 +0000 (12:27 -0600)]
Moved annotations on Unknown exp to field study

2 months agoChanged evidence code from IMP to IC
Laurel Cooper [Mon, 13 Oct 2025 18:23:37 +0000 (12:23 -0600)]
Changed evidence code from IMP to IC

2 months agoReplaced incorrect GR_REF:5870 with GR_REF:11453
Laurel Cooper [Mon, 13 Oct 2025 18:05:15 +0000 (12:05 -0600)]
Replaced incorrect GR_REF:5870 with GR_REF:11453

2 months agoRemoved annotation to unknown exposure PECO:0007403
Laurel Cooper [Mon, 13 Oct 2025 17:32:36 +0000 (11:32 -0600)]
Removed annotation to unknown exposure PECO:0007403

2 months agoFix one more obsolete and fix aspect for it
Justin Elser [Thu, 9 Oct 2025 00:06:13 +0000 (17:06 -0700)]
Fix one more obsolete and fix aspect for it

2 months agoFix incorrect aspects
Justin Elser [Wed, 8 Oct 2025 23:27:45 +0000 (16:27 -0700)]
Fix incorrect aspects

2 months agoMissed subfolders with last obsolete replace
Justin Elser [Wed, 8 Oct 2025 23:10:38 +0000 (16:10 -0700)]
Missed subfolders with last obsolete replace

2 months agoReplace obsoletes with replacement or parent terms
Justin Elser [Wed, 8 Oct 2025 22:39:25 +0000 (15:39 -0700)]
Replace obsoletes with replacement or parent terms

2 months agoMerge branch 'main' of https://gitlab.cqls.oregonstate.edu/jaiswal-lab/associations
Laurel Cooper [Wed, 1 Oct 2025 22:06:27 +0000 (16:06 -0600)]
Merge branch 'main' of https://gitlab.cqls.oregonstate.edu/jaiswal-lab/associations

2 months agoAdded header to make it easier to read
Laurel Cooper [Wed, 1 Oct 2025 22:06:22 +0000 (16:06 -0600)]
Added header to make it easier to read

2 months agoAdd missing DB obj symbol (column 3) for a couple
Justin Elser [Wed, 1 Oct 2025 21:33:13 +0000 (14:33 -0700)]
Add missing DB obj symbol (column 3) for a couple

2 months agoRemove extra spaces from publications columns
Justin Elser [Wed, 1 Oct 2025 21:24:28 +0000 (14:24 -0700)]
Remove extra spaces from publications columns

2 months agoRemove blank line
Justin Elser [Wed, 1 Oct 2025 21:23:16 +0000 (14:23 -0700)]
Remove blank line

2 months agoHad DOS formatting, ran dos2unix to clean up
Justin Elser [Wed, 1 Oct 2025 21:16:08 +0000 (14:16 -0700)]
Had DOS formatting, ran dos2unix to clean up

2 months agoReassigning annotations
Laurel Cooper [Wed, 1 Oct 2025 19:40:17 +0000 (13:40 -0600)]
Reassigning annotations

2 months agoMoved annotations to TO:0000439 fungal disease response
Laurel Cooper [Wed, 1 Oct 2025 19:14:56 +0000 (13:14 -0600)]
Moved annotations to TO:0000439 fungal disease response

2 months agoMoving annotations to TO:0000604
Laurel Cooper [Wed, 1 Oct 2025 19:06:19 +0000 (13:06 -0600)]
Moving annotations to TO:0000604

2 months agoFixing references
Laurel Cooper [Tue, 30 Sep 2025 21:58:02 +0000 (15:58 -0600)]
Fixing references

2 months agoUpdating mappings
Laurel Cooper [Wed, 24 Sep 2025 22:13:41 +0000 (15:13 -0700)]
Updating mappings

2 months agoMoving annotations to new TO terms
Laurel Cooper [Wed, 24 Sep 2025 21:43:50 +0000 (14:43 -0700)]
Moving annotations to new TO terms

2 months agoMoving files
cooperl09 [Wed, 24 Sep 2025 18:39:18 +0000 (11:39 -0700)]
Moving files

2 months agoMoving duplicate QTL files to new folder so they won't be loaded
cooperl09 [Wed, 24 Sep 2025 18:37:04 +0000 (11:37 -0700)]
Moving duplicate QTL files to new folder so they won't be loaded

2 months agoMoving annotations
cooperl09 [Tue, 23 Sep 2025 21:54:13 +0000 (14:54 -0700)]
Moving annotations

2 months agoMoving annotations
cooperl09 [Tue, 23 Sep 2025 20:49:17 +0000 (13:49 -0700)]
Moving annotations

2 months agoFixed Xrefs
cooperl09 [Mon, 22 Sep 2025 22:02:56 +0000 (15:02 -0700)]
Fixed Xrefs

2 months agoFixing xref
cooperl09 [Fri, 19 Sep 2025 16:48:46 +0000 (09:48 -0700)]
Fixing xref

2 months agoMoving annotations, cleaning up synonyms
Laurel Cooper [Thu, 18 Sep 2025 22:39:56 +0000 (15:39 -0700)]
Moving annotations, cleaning up synonyms

2 months agoMoving annotations, cleaning up synonyms
Laurel Cooper [Thu, 18 Sep 2025 22:22:41 +0000 (15:22 -0700)]
Moving annotations, cleaning up synonyms

2 months agoreassigning annotations to study conditions
cooperl09 [Wed, 17 Sep 2025 21:42:26 +0000 (14:42 -0700)]
reassigning annotations to study conditions

2 months agoUpdate obsolete GO annotations
Justin Elser [Wed, 17 Sep 2025 14:47:53 +0000 (07:47 -0700)]
Update obsolete GO annotations

3 months agoFixing evidence codes
cooperl09 [Thu, 11 Sep 2025 18:06:50 +0000 (11:06 -0700)]
Fixing evidence codes

3 months agoUpdate po_miRNA_Oryza_miRBase.assoc
cooperl09 [Wed, 10 Sep 2025 22:58:35 +0000 (15:58 -0700)]
Update po_miRNA_Oryza_miRBase.assoc

3 months agoCleaning up annotation extensions
cooperl09 [Wed, 10 Sep 2025 19:32:44 +0000 (12:32 -0700)]
Cleaning up annotation extensions

3 months agocleaning up names
cooperl09 [Wed, 10 Sep 2025 19:17:47 +0000 (12:17 -0700)]
cleaning up names

3 months agoCleaning up synonym field
cooperl09 [Wed, 10 Sep 2025 19:09:14 +0000 (12:09 -0700)]
Cleaning up synonym field

3 months agoUpdating mappings
Laurel Cooper [Mon, 8 Sep 2025 19:51:13 +0000 (12:51 -0700)]
Updating mappings

3 months agoReassigning annotations to better fit the definitions
Laurel Cooper [Wed, 3 Sep 2025 23:06:25 +0000 (16:06 -0700)]
Reassigning annotations to better fit the definitions

3 months agoMove 4 annotations to parent term
Laurel Cooper [Sat, 30 Aug 2025 23:23:43 +0000 (16:23 -0700)]
Move 4 annotations to parent term

3 months agoFixed 2 annotations
Laurel Cooper [Sat, 30 Aug 2025 23:14:44 +0000 (16:14 -0700)]
Fixed 2 annotations

3 months agoMoved annotations to TO:0000170 elongation under submergence
cooperl09 [Thu, 28 Aug 2025 22:29:57 +0000 (15:29 -0700)]
Moved annotations to TO:0000170 elongation under submergence

3 months agoUpdate to_qtl_glycine_SoyBase.assoc
cooperl09 [Thu, 28 Aug 2025 22:14:56 +0000 (15:14 -0700)]
Update to_qtl_glycine_SoyBase.assoc

Moved 31 annotations from  TO:0000114 flooding related trait to TO:0000524 submergence tolerance

3 months agoMoved 2 annotations to TO:0000286
cooperl09 [Thu, 28 Aug 2025 22:03:23 +0000 (15:03 -0700)]
Moved 2 annotations to TO:0000286

3 months agoMoved 2 annotations to grain tenderness
cooperl09 [Thu, 28 Aug 2025 19:43:20 +0000 (12:43 -0700)]
Moved 2 annotations to grain tenderness

3 months agoUpdate to_qtl_Setaria_italica_Gramene.assoc
cooperl09 [Fri, 22 Aug 2025 20:32:30 +0000 (13:32 -0700)]
Update to_qtl_Setaria_italica_Gramene.assoc

Moved annotations from  cauline axillary branch number to stem branch number

3 months agoRenamed axillary branch number
cooperl09 [Fri, 22 Aug 2025 20:26:22 +0000 (13:26 -0700)]
Renamed axillary branch number

3 months agoMoved annotation to TO:0000031 silicon response
cooperl09 [Thu, 21 Aug 2025 19:10:39 +0000 (12:10 -0700)]
Moved annotation to TO:0000031  silicon response

3 months agoMoved annotations to TO:0000437 plant male sterility
cooperl09 [Wed, 20 Aug 2025 21:50:57 +0000 (14:50 -0700)]
Moved annotations to TO:0000437 plant male sterility

3 months agoFixing synonyms
cooperl09 [Wed, 20 Aug 2025 21:48:59 +0000 (14:48 -0700)]
Fixing synonyms

3 months agoFixed conflicted changes
cooperl09 [Mon, 18 Aug 2025 22:28:40 +0000 (15:28 -0700)]
Fixed conflicted changes

3 months agoFixed line length
cooperl09 [Mon, 18 Aug 2025 22:09:01 +0000 (15:09 -0700)]
Fixed line length

3 months agoFixed line length
cooperl09 [Mon, 18 Aug 2025 22:06:29 +0000 (15:06 -0700)]
Fixed line length

3 months agoNoved i annotation to TO:0000580
cooperl09 [Mon, 18 Aug 2025 18:05:32 +0000 (11:05 -0700)]
Noved i annotation to TO:0000580

3 months agoFixed annotations
cooperl09 [Sat, 16 Aug 2025 18:49:03 +0000 (11:49 -0700)]
Fixed annotations

3 months agoRemoved duplicated lines
cooperl09 [Fri, 15 Aug 2025 22:11:59 +0000 (15:11 -0700)]
Removed duplicated lines

3 months agoMoved annotations from pollen sterility (TO:0000053) to TO:0000437 male sterility
cooperl09 [Fri, 15 Aug 2025 20:57:27 +0000 (13:57 -0700)]
Moved annotations from pollen sterility (TO:0000053) to TO:0000437 male sterility

3 months agoMoved annotations, fixed duplicated synonyms and refs
cooperl09 [Fri, 15 Aug 2025 20:49:07 +0000 (13:49 -0700)]
Moved annotations, fixed duplicated synonyms and refs

4 months agoMoved two annotations to TO:0000036
Laurel Cooper [Thu, 14 Aug 2025 23:04:10 +0000 (16:04 -0700)]
Moved two annotations to TO:0000036

4 months agoAdding curator xref
Laurel Cooper [Thu, 14 Aug 2025 22:58:58 +0000 (15:58 -0700)]
Adding curator xref

4 months agoRemoved a few more duplicated synonyms
Laurel Cooper [Thu, 14 Aug 2025 22:53:45 +0000 (15:53 -0700)]
Removed a few more duplicated synonyms

4 months agoRemoved duplicated synonyms
Laurel Cooper [Thu, 14 Aug 2025 22:51:07 +0000 (15:51 -0700)]
Removed duplicated synonyms

4 months agoMoved annotations from TO:0000042 to parent term TO:0000035 incompatibility trait
Laurel Cooper [Thu, 14 Aug 2025 22:30:11 +0000 (15:30 -0700)]
Moved annotations from TO:0000042 to parent term TO:0000035 incompatibility trait

4 months agoMoved annotations from TO:0000036 and TO:0000046 to parent term TO:0000035 hybrid...
Laurel Cooper [Thu, 14 Aug 2025 22:25:50 +0000 (15:25 -0700)]
Moved annotations from TO:0000036 and TO:0000046 to  parent term TO:0000035  hybrid incompatibility

4 months agoFixed typo
Laurel Cooper [Thu, 14 Aug 2025 20:37:18 +0000 (13:37 -0700)]
Fixed typo

4 months agoMoved 1 annotation to grain quality TO:0000162
cooperl09 [Tue, 12 Aug 2025 23:00:31 +0000 (16:00 -0700)]
Moved 1 annotation to grain quality  TO:0000162

4 months agoRemoved annotation to incorrect term
cooperl09 [Mon, 11 Aug 2025 22:41:17 +0000 (15:41 -0700)]
Removed annotation to incorrect term

4 months agoFilled in ref column
cooperl09 [Fri, 8 Aug 2025 16:59:43 +0000 (09:59 -0700)]
Filled in ref column

4 months agoAdded missing line return
cooperl09 [Wed, 6 Aug 2025 17:03:45 +0000 (10:03 -0700)]
Added missing line return

4 months agoAdding new file for Triticeae QTLs
cooperl09 [Tue, 5 Aug 2025 23:14:15 +0000 (16:14 -0700)]
Adding new file for Triticeae QTLs

4 months agoFixing filename
cooperl09 [Tue, 5 Aug 2025 23:08:42 +0000 (16:08 -0700)]
Fixing filename

4 months agoFixed database name
cooperl09 [Tue, 5 Aug 2025 20:29:40 +0000 (13:29 -0700)]
Fixed database name

4 months agoAdding new file of oat QTLs from GrainGenes
cooperl09 [Tue, 5 Aug 2025 19:11:23 +0000 (12:11 -0700)]
Adding new file of oat QTLs from GrainGenes

4 months agoMoved 3 QTLs to TO:0000631
cooperl09 [Fri, 1 Aug 2025 22:42:52 +0000 (15:42 -0700)]
Moved 3 QTLs to TO:0000631

4 months agoRemoved 4 duplicated lines
Laurel Cooper [Thu, 31 Jul 2025 22:15:37 +0000 (15:15 -0700)]
Removed 4 duplicated lines

4 months agoAdding more barley QTLs, fixing annotations
cooperl09 [Thu, 31 Jul 2025 19:01:26 +0000 (12:01 -0700)]
Adding more barley QTLs, fixing annotations

4 months agoAdded line return at the end
cooperl09 [Wed, 30 Jul 2025 23:10:49 +0000 (16:10 -0700)]
Added line return at the end

4 months agoAdding more annotations
cooperl09 [Wed, 30 Jul 2025 22:10:15 +0000 (15:10 -0700)]
Adding more annotations

4 months agoFixed typo
cooperl09 [Wed, 30 Jul 2025 19:16:39 +0000 (12:16 -0700)]
Fixed typo

4 months agoAdding test file of GrainGenes QTLs
cooperl09 [Wed, 30 Jul 2025 19:05:51 +0000 (12:05 -0700)]
Adding test file of GrainGenes QTLs