From 095831cff19579408c606a87de40fd2d82c280fa Mon Sep 17 00:00:00 2001
From: preecej <preecej@localhost>
Date: Sat, 14 Jul 2012 00:33:57 +0000
Subject: [PATCH] Fixed curr_ontology_type bug in transform_gaf, correctly
 switches between ontologies in the same file during XML generation

svn path=/; revision=359
---
 planteome/paw/paw_TransformForImport.pl | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/planteome/paw/paw_TransformForImport.pl b/planteome/paw/paw_TransformForImport.pl
index abef8c5..076dca5 100644
--- a/planteome/paw/paw_TransformForImport.pl
+++ b/planteome/paw/paw_TransformForImport.pl
@@ -815,6 +815,9 @@ sub transform_gaf
         ENCODING    => 'utf-8'
         );
 
+    # clear the $curr_ontology_type var
+    $curr_ontology_type = "";
+    
     # create root elements
     $writer->xmlDecl;
     $writer->startTag("Pages");
@@ -885,6 +888,9 @@ sub transform_gaf
     
                     foreach my $ont_term (keys %{$annotations{$annotation}{"Ontological References"}})
                     {
+                        # determine current ontology
+                        $curr_ontology_type = (split(':',$ont_term))[0];
+                        
                         # gather PMID's for separate Ref Publication page creation (avoid dupes)
                         if (scalar keys (%{$annotations{$annotation}{"Ontological References"}{$ont_term}{"Publications"}}) > 0) {
                             foreach my $pub_term (keys %{$annotations{$annotation}{"Ontological References"}{$ont_term}{"Publications"}})
-- 
2.34.1