From 0f6f158f189cf7971eece388e818cfb8a08ecbea Mon Sep 17 00:00:00 2001 From: meiera Date: Sat, 12 Sep 2015 00:07:17 +0000 Subject: [PATCH] removed duplicate lines from GO_ontology_IMP_gene_M.truncatula.assoc svn path=/; revision=543 --- .../GO_ontology_IMP_gene_M.truncatula.assoc | 78 +++++++++---------- 1 file changed, 35 insertions(+), 43 deletions(-) diff --git a/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_M.truncatula.assoc b/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_M.truncatula.assoc index 2c158df..07dbae4 100644 --- a/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_M.truncatula.assoc +++ b/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_M.truncatula.assoc @@ -1,54 +1,46 @@ -LIS Medtr5g030920 nork nodulation GO:0009877 25774204 IMP BP Medtr5g030920 nodulation receptor kinase Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr5g086130 LYK3 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g086130 LYSIN MOTIF RECEPTOR-LIKE KINASE 3 Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr5g086120 LYK4 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g086120 LYSIN MOTIF RECEPTOR-LIKE KINASE 4 Gene taxon:3880 20150629 Ethan Johnson +LIS AFI56799.1 NAM floral whorl formation GO:0048458 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS AFI56799.1 NAM specification of petal identity GO:0010095 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS AFI56799.1 NAM specification of sepal identity GO:0010096 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS AFI56799.1 NAM stigma development GO:0048480 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS AFI56799.1 NAM style development GO:0048479 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS AFI56799.1 NAM vegetative meristem growth GO:0010448 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson +LIS CAD48198.1 ENOD40 tissue development GO:0009888 25774204 IMP BP CAD48198.1 Early nodulin 40 Gene taxon:3880 20150701 Ethan Johnson +LIS CAI29046.1 MtAOC arbuscular mycorrhizal association GO:0036377 25774204 IMP BP CAI29046.1 Allene-oxide cyclase Gene taxon:3880 20150701 Ethan Johnson +LIS CAI29046.1 MtAOC arbuscule GO:0085041 25774204 IMP CC CAI29046.1 Allene-oxide cyclase Gene taxon:3880 20150701 Ethan Johnson +LIS CAR57918.1 MtCCD1 arbuscule GO:0085041 25774204 IMP CC CAR57918.1 carotenoid cleavage dioxygenase 1 Gene taxon:3880 20150701 Ethan Johnson LIS Medtr2g005870 DMI1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr2g005870 doesn't make infections 1 Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr5g022030 CDPK1 root hair GO:0035618 25774204 IMP CC Medtr5g022030 calcium-dependent protein kinase 1 Gene taxon:3880 20150629 Ethan Johnson part_of [PO:0000256] -LIS Medtr7g084970 FTa1 flower development GO:0009908 25774204 IMP BP Medtr7g084970 Similar to FLOWERING LOCUS T Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr3g021180 cyp716A12 saponin biosynthetic process GO:0016135 25774204 IMP BP Medtr3g021180 cytochrome P450 monoxygenase Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr3g021350 cyp716A12 saponin biosynthetic process GO:0016135 25774204 IMP BP Medtr3g021350 cytochrome P450 monoxygenase Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr3g098560 SGL1 leaf morphogenesis GO:0009965 25774204 IMP BP Medtr3g098560 single leaflet1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr3g099620 bHLH1 nodule morphogenesis GO:0009878 25774204 IMP BP Medtr3g099620 basic helix loop helix 1 Gene taxon:3880 20150701 Ethan Johnson LIS Medtr3g106420 FLOT2 acetylene metabolic process GO:0018864 25774204 IMP BP Medtr3g106420 Flotillin-like protein 2 Gene taxon:3880 20150629 Ethan Johnson LIS Medtr3g106420 FLOT2 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr3g106420 Flotillin-like protein 2 Gene taxon:3880 20150629 Ethan Johnson LIS Medtr3g106430 FLOT4 acetylene metabolic process GO:0018864 25774204 IMP BP Medtr3g106430 Flotillin-like protein 4 Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr3g106430 FLOT4 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr3g106430 Flotillin-like protein 4 Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr3g106430 FLOT4 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr3g106430 Flotillin-like protein 4 Gene taxon:3880 20150629 Ethan Johnson -LIS Medtr5g014400 PALM1 compound leaf morphogenesis GO:0060777 25774204 IMP BP Medtr5g014400 PALMATE-LIKE PENTAFOLIATA1 Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr4g070970 SUNN cellular response to nitrogen levels GO:0043562 25774204 IMP BP Medtr4g070970 super numeric nodules Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0009005] LIS Medtr4g084140 MtNAP1 acetylene metabolic process GO:0018864 25774204 IMP BP Medtr4g084140 Nick-associated protein 1 Gene taxon:3880 20150629 Ethan Johnson LIS Medtr4g084140 MtNAP1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr4g084140 Nick-associated protein 1 Gene taxon:3880 20150629 Ethan Johnson LIS Medtr4g084140 MtNAP1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr4g084140 Nick-associated protein 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0000256] LIS Medtr4g084140 MtNAP1 nitrogenase activity GO:0016163 25774204 IMP BP Medtr4g084140 Nick-associated protein 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0003023] -LIS AFI56799.1 NAM vegetative meristem growth GO:0010448 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS AFI56799.1 NAM floral whorl formation GO:0048458 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS AFI56799.1 NAM specification of sepal identity GO:0010096 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS AFI56799.1 NAM specification of petal identity GO:0010095 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS AFI56799.1 NAM style development GO:0048479 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS AFI56799.1 NAM stigma development GO:0048480 25774204 IMP BP AFI56799.1 No Apical Meristem (null allele) Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr1g090320 LIN formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr1g090320 Lumpy infections Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr1g090320 LIN formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr1g090320 Lumpy infections Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr4g070970 SUNN cellular response to nitrogen levels GO:0043562 25774204 IMP BP Medtr4g070970 super numeric nodules Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0009005] -LIS Medtr8g106150 MtCre1 root development GO:0048364 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr8g106150 MtCre1 cellular response to cytokinin stimulus GO:0071368 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr8g106150 MtCre1 nodule morphogenesis GO:0009878 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr8g106150 MtCre1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr7g101410 Skl1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr7g101410 Skl1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr7g101410 Skl1 gravitropism GO:0009630 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr7g101410 Skl1 negative regulation of growth GO:0045926 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0020100] -LIS Medtr7g101410 Skl1 negative regulation of growth GO:0045926 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in PO:0009005] -LIS Medtr7g101410 Skl1 negative regulation of growth GO:0045926 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in PO:0009005] -LIS Medtr7g101410 Skl1 defense response to fungus GO:0050832 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr7g101410 Skl1 ethylene biosynthetic process GO:0009693 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr5g014400 PALM1 compound leaf morphogenesis GO:0060777 25774204 IMP BP Medtr5g014400 PALMATE-LIKE PENTAFOLIATA1 Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr5g019040 NFP formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g019040 Nod Factor Perception Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr5g022030 CDPK1 root hair GO:0035618 25774204 IMP CC Medtr5g022030 calcium-dependent protein kinase 1 Gene taxon:3880 20150629 Ethan Johnson part_of [PO:0000256] LIS Medtr5g026850 CYCLOPS formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g026850 cyclops Gene taxon:3880 20150630 Ethan Johnson LIS Medtr5g026850 CYCLOPS nodule morphogenesis GO:0009878 25774204 IMP BP Medtr5g026850 cyclops Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr5g019040 NFP formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g019040 Nod Factor Perception Gene taxon:3880 20150630 Ethan Johnson -LIS Medtr3g098560 SGL1 leaf morphogenesis GO:0009965 25774204 IMP BP Medtr3g098560 single leaflet1 Gene taxon:3880 20150630 Ethan Johnson -LIS CAI29046.1 MtAOC arbuscular mycorrhizal association GO:0036377 25774204 IMP BP CAI29046.1 Allene-oxide cyclase Gene taxon:3880 20150701 Ethan Johnson -LIS CAI29046.1 MtAOC arbuscule GO:0085041 25774204 IMP CC CAI29046.1 Allene-oxide cyclase Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr3g099620 bHLH1 nodule morphogenesis GO:0009878 25774204 IMP BP Medtr3g099620 basic helix loop helix 1 Gene taxon:3880 20150701 Ethan Johnson -LIS CAR57918.1 MtCCD1 arbuscule GO:0085041 25774204 IMP CC CAR57918.1 carotenoid cleavage dioxygenase 1 Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr8g055940 chitIII-3 spore germination GO:0009847 25774204 IMP BP Medtr8g055940 class III chitinase Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr8g055940 chitIII-3 chlamydospore formation GO:0001410 25774204 IMP BP Medtr8g055940 class III chitinase Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr3g021350 cyp716A12 saponin biosynthetic process GO:0016135 25774204 IMP BP Medtr3g021350 cytochrome P450 monoxygenase Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr3g021180 cyp716A12 saponin biosynthetic process GO:0016135 25774204 IMP BP Medtr3g021180 cytochrome P450 monoxygenase Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr8g020200 ELF4 Circadian rhythm GO:0007623 25774204 IMP BP Medtr8g020200 EARLY FLOWERING 4 Gene taxon:3880 20150701 Ethan Johnson -LIS CAD48198.1 ENOD40 tissue development GO:0009888 25774204 IMP BP CAD48198.1 Early nodulin 40 Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr7g085810 ERN formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr7g085810 ERF Required for Nodulation Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr5g030920 nork nodulation GO:0009877 25774204 IMP BP Medtr5g030920 nodulation receptor kinase Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr5g086120 LYK4 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g086120 LYSIN MOTIF RECEPTOR-LIKE KINASE 4 Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr5g086130 LYK3 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr5g086130 LYSIN MOTIF RECEPTOR-LIKE KINASE 3 Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr7g084970 FTa1 flower development GO:0009908 25774204 IMP BP Medtr7g084970 Similar to FLOWERING LOCUS T Gene taxon:3880 20150629 Ethan Johnson +LIS Medtr7g085040 FTc flower development GO:0009908 25774204 IMP BP Medtr7g085040 FLOWERING LOCUS T c Gene taxon:3880 20150701 Ethan Johnson LIS Medtr7g085810 ERN Signal transduction GO:0007165 25774204 IMP BP Medtr7g085810 ERF Required for Nodulation Gene taxon:3880 20150701 Ethan Johnson -LIS Medtr7g085040 FTc flower development GO:0009908 25774204 IMP BP Medtr7g085040 FLOWERING LOCUS T c Gene taxon:3880 20150701 Ethan Johnson \ No newline at end of file +LIS Medtr7g085810 ERN formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr7g085810 ERF Required for Nodulation Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr7g101410 Skl1 defense response to fungus GO:0050832 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr7g101410 Skl1 ethylene biosynthetic process GO:0009693 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr7g101410 Skl1 gravitropism GO:0009630 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr7g101410 Skl1 negative regulation of growth GO:0045926 25774204 IMP BP Medtr7g101410 Sickle 1 Gene taxon:3880 20150630 Ethan Johnson occurs_in [PO:0020100] +LIS Medtr8g020200 ELF4 Circadian rhythm GO:0007623 25774204 IMP BP Medtr8g020200 EARLY FLOWERING 4 Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr8g055940 chitIII-3 chlamydospore formation GO:0001410 25774204 IMP BP Medtr8g055940 class III chitinase Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr8g055940 chitIII-3 spore germination GO:0009847 25774204 IMP BP Medtr8g055940 class III chitinase Gene taxon:3880 20150701 Ethan Johnson +LIS Medtr8g106150 MtCre1 cellular response to cytokinin stimulus GO:0071368 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr8g106150 MtCre1 formation of infection structure on or near host GO:0075015 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr8g106150 MtCre1 nodule morphogenesis GO:0009878 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson +LIS Medtr8g106150 MtCre1 root development GO:0048364 25774204 IMP BP Medtr8g106150 Cytokinin Response1 Gene taxon:3880 20150630 Ethan Johnson -- 2.34.1