From 11e80b2c1e09353f0c38575b0d15d640ffcfc31d Mon Sep 17 00:00:00 2001
From: elserj <elserj@localhost>
Date: Wed, 16 Sep 2020 21:55:45 +0000
Subject: [PATCH] Modify trans_filter so that Saliva_hispanica is not counted

svn path=/; revision=680
---
 interactome_scripts/find_species.pl | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 5a47541..97d2e2e 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -1517,6 +1517,13 @@ sub trans_filter {
 				if ($gene =~ /t[2-9]$/) {$is_transcript = 0;}
 				elsif ($gene =~ /t1[0-9]$/) {$is_transcript = 0;}
 		}
+		
+
+		# Salvia hispanica genes should all be counted
+		if($species eq "Salvia_hispanica") {
+			$is_transcript = 1;
+		}
+
 return $is_transcript;
 }
 
-- 
2.34.1