From 1e7bf200f8d3c7b1ad37ad61453238c02de080a0 Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Mon, 14 Jul 2025 15:55:09 -0600 Subject: [PATCH] Moved 11 annotations from seed dormancy TO:0000253 to New term- grain dormancy TO:0001159 --- to-associations/to_gene_Oryza_Gramene.assoc | 22 ++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index c7d6199..6c2fb4f 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -874,10 +874,10 @@ GR_gene GR:0060851 SD10 TO:0000576 GR_REF:6256 IMP T SEMIDWARF 10 semidwarf-10 GR_gene GR:0060852 SDG TO:0000576 GR_REF:5675 IMP T SEMIDWARF sdg*|semidwarf (BRGPC)|sd11|semidwarf-11|sd11|semidwarf-11 gene taxon:4530 20121108 Gramene GR_gene GR:0060853 sd12 TO:0000576 GR_REF:5973 IMP T semidwarf-12 semidwarf|sd* gene taxon:4530 20121108 Gramene GR_gene GR:0060854 sd13 TO:0000576 GR_REF:3605 IMP T semidwarf-13 semidwarf|sd* gene taxon:4530 20121108 Gramene -GR_gene GR:0060856 SDRA TO:0000253 GR_REF:681 IMP T SEED DORMANCY A Sdra|Sdua|Seed dormancy-a|Sdr6|Seed dormancy-6|Sdr6|Seed dormancy-6 gene taxon:4530 20121108 Gramene -GR_gene GR:0060857 SDRB TO:0000253 GR_REF:5958 IMP T SEED DORMANCY B Seed dormancy-b|Sdub|Sdrb|Sdr7|Seed dormancy-7|Sdr7|Seed dormancy-7 gene taxon:4530 20121108 Gramene -GR_gene GR:0060858 SDR1 TO:0000253 GR_REF:6969 IMP T SEED DORMANCY 1 Sdr1|Seed dormancy-1|Sdr1|Seed dormancy-1 gene taxon:4530 20121108 Gramene -GR_gene GR:0060859 SDR2 TO:0000253 GR_REF:6380 IMP T SEED DORMANCY 2 Sdr2|Seed dormancy-2|Sdr2|Seed dormancy-2 gene taxon:4530 20121108 Gramene +GR_gene GR:0060856 SDRA TO:0001159 GR_REF:681 IMP T SEED DORMANCY A Sdra|Sdua|Seed dormancy-a|Sdr6|Seed dormancy-6|Sdr6|Seed dormancy-6 gene taxon:4530 20121108 Gramene +GR_gene GR:0060857 SDRB TO:0001159 GR_REF:5958 IMP T SEED DORMANCY B Seed dormancy-b|Sdub|Sdrb|Sdr7|Seed dormancy-7|Sdr7|Seed dormancy-7 gene taxon:4530 20121108 Gramene +GR_gene GR:0060858 SDR1 TO:0001159 GR_REF:6969 IMP T SEED DORMANCY 1 Sdr1|Seed dormancy-1|Sdr1|Seed dormancy-1 gene taxon:4530 20121108 Gramene +GR_gene GR:0060859 SDR2 TO:0001159 GR_REF:6380 IMP T SEED DORMANCY 2 Sdr2|Seed dormancy-2|Sdr2|Seed dormancy-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060861 SE2 TO:0000137 GR_REF:0 IMP T HYBRID STERILITY E 2 photoperiod-sensitivity-2|se2|fl5|flowering date-5|fl5|flowering date-5 gene taxon:4530 20121108 Gramene GR_gene GR:0060861 SE2 TO:0000229 GR_REF:0 IMP T HYBRID STERILITY E 2 photoperiod-sensitivity-2|se2|fl5|flowering date-5|fl5|flowering date-5 gene taxon:4530 20121108 Gramene GR_gene GR:0060865 SE6 TO:0000137 GR_REF:4598 IMP T PHOTOSENSITIVITY 6 se6(t)|photoperiod-sensitivity-6(W1623)|fl9|flowering date-9|fl9|flowering date-9 gene taxon:4530 20121108 Gramene @@ -892,7 +892,7 @@ GR_gene GR:0060870 SE11 TO:0000137 GR_REF:5995 IMP T PHOTOSENSITIVITY 11 se11( GR_gene GR:0060870 SE11 TO:0000229 GR_REF:5995 IMP T PHOTOSENSITIVITY 11 se11(t)*|photoperiod-sensitivity-11|fl14|flowering date-14|fl14|flowering date-14 gene taxon:4530 20121108 Gramene GR_gene GR:0060871 SE12 TO:0000137 GR_REF:4590 IMP T PHOTOSENSITIVITY 12 Se12|Photoperiod-sensitivity-12|Fl15|Flowering date-15|Fl15|Flowering date-15 gene taxon:4530 20121108 Gramene GR_gene GR:0060871 SE12 TO:0000229 GR_REF:4590 IMP T PHOTOSENSITIVITY 12 Se12|Photoperiod-sensitivity-12|Fl15|Flowering date-15|Fl15|Flowering date-15 gene taxon:4530 20121108 Gramene -GR_gene GR:0060872 SG TO:0000253 GR_REF:0 IMP T PERMEABILITY OF TESTA TO WATER Sg|Permeability of testa to water|Sg|Permeability of testa to water gene taxon:4530 20121108 Gramene +GR_gene GR:0060872 SG TO:0001159 GR_REF:0 IMP T PERMEABILITY OF TESTA TO WATER Sg|Permeability of testa to water|Sg|Permeability of testa to water gene taxon:4530 20121108 Gramene GR_gene GR:0060873 SH1 TO:0000473 GR_REF:1059 IMP T SHATTERING 1 sh1|shattering-1|sh1|shattering-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060874 SH2 TO:0000473 GR_REF:1058 IMP T SHATTERING 2 sh2|shattering-2|sh2|shattering-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060875 SH3 TO:0000473 GR_REF:848 IMP T SHATTERING 3 Sh3|Shattering-3|Sh3|Shattering-3 gene taxon:4530 20121108 Gramene @@ -934,7 +934,7 @@ GR_gene GR:0060957 TMS3 TO:0000067 GR_REF:5342 IMP T THERMOSENSITIVE MALE STER GR_gene GR:0060958 TMS TO:0000044 GR_REF:9748 IMP T THERMOSENSITIVE MALE STERILITY tms(t)*|thermosensitive male sterility|ms83|male sterile-83|ms83|male sterile-83 gene taxon:4530 20121108 Gramene GR_gene GR:0060958 TMS TO:0000067 GR_REF:9748 IMP T THERMOSENSITIVE MALE STERILITY tms(t)*|thermosensitive male sterility|ms83|male sterile-83|ms83|male sterile-83 gene taxon:4530 20121108 Gramene GR_gene GR:0060960 ms87 TO:0000067 GR_REF:10783 IMP T male sterile-87 thermosensitive male sterility-7|tms7|tms6 gene taxon:4530 20121108 Gramene -GR_gene GR:0060995 VP1 TO:0000253 GR_REF:6978 IMP T VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene +GR_gene GR:0060995 VP1 TO:0001159 GR_REF:6978 IMP T VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene GR_gene GR:0060995 VP1 TO:0000619 GR_REF:6978 IMP T VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene GR_gene GR:0060996 W1 TO:0000042 GR_REF:5547 IMP T DOMINANT F1 WEAKNESS W1*|Dominant F1 weakness|Hwg1|Hybrid weakness-g1|Hwg1|Hybrid weakness-g1 gene taxon:4530 20121108 Gramene GR_gene GR:0060997 W2 TO:0000042 GR_REF:5547 IMP T DOMINANT F1 WEAKNESS W2*|Dominant F1 weakness|Hwg2|hybrid weakness-g2|Hwg2|hybrid weakness-g2 gene taxon:4530 20121108 Gramene @@ -1167,7 +1167,7 @@ GR_gene GR:0061234 MS61 TO:0000199 GR_REF:5610 IMP T MALE STERILE 61 male ster GR_gene GR:0061235 MS62 TO:0000199 GR_REF:5610 IMP T MALE STERILE 62 male sterile-63|ms62|male sterile-62|ms62|male sterile-62 gene taxon:4530 20121108 Gramene GR_gene GR:0061236 MS63 TO:0000199 GR_REF:5610 IMP T MALE STERILE 63 oms|open hull male sterile|ms63|male sterile-63|ms63|male sterile-63 gene taxon:4530 20121108 Gramene GR_gene GR:0061236 MS63 TO:0000474 GR_REF:5610 IMP T MALE STERILE 63 oms|open hull male sterile|ms63|male sterile-63|ms63|male sterile-63 gene taxon:4530 20121108 Gramene -GR_gene GR:0061237 Sdr5 TO:0000253 GR_REF:0 IMP T Seed dormancy-5 gene taxon:4530 20121108 Gramene +GR_gene GR:0061237 Sdr5 TO:0001159 GR_REF:0 IMP T Seed dormancy-5 gene taxon:4530 20121108 Gramene GR_gene GR:0061240 Ctb2 TO:0000303 GR_REF:0 IMP T Cold tolerance at booting stage-2 Cold tolerance at booting stage|pCT1* gene taxon:4530 20121108 Gramene GR_gene GR:0061241 Ctb3 TO:0000303 GR_REF:0 IMP T Cold tolerance at booting stage-3 Cold tolerance at booting stage|pCT2* gene taxon:4530 20121108 Gramene GR_gene GR:0061242 Ctb4 TO:0000303 GR_REF:0 IMP T Cold tolerance at booting stage-4 pCT3*|Cold tolerance at booting stage gene taxon:4530 20121108 Gramene @@ -1316,8 +1316,8 @@ GR_gene GR:0060754 RHW TO:0000042 GR_REF:10042 IMP T HYBRID WEAKNESS RESTORATI GR_gene GR:0060755 RHZ TO:0000257 GR_REF:6271 IMP T RHIZOME GENE Rhizomatous from O. longistaminata|Rhz(t)|Rhz1|Rhizomatous from O. longistaminata-1|Rhz1|Rhizomatous from O. longistaminata-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060756 RI TO:0000052 GR_REF:1712 IMP T VERTICILLATE RACHIS ri|verticillate rachis|ri|verticillate rachis gene taxon:4530 20121108 Gramene GR_gene GR:0060756 RI TO:0000089 GR_REF:1712 IMP T VERTICILLATE RACHIS ri|verticillate rachis|ri|verticillate rachis gene taxon:4530 20121108 Gramene -GR_gene GR:0060759 RIV1 TO:0000253 GR_REF:6285 IMP T RICE VIVIPARY 1 riv1|rice vivipary-1|riv1|rice vivipary-1 gene taxon:4530 20121108 Gramene -GR_gene GR:0060760 RIV2 TO:0000253 GR_REF:6975 IMP T RICE VIVIPARY 2 riv2|rice vivipary-2|riv2|rice vivipary-2 gene taxon:4530 20121108 Gramene +GR_gene GR:0060759 RIV1 TO:0001159 GR_REF:6285 IMP T RICE VIVIPARY 1 riv1|rice vivipary-1|riv1|rice vivipary-1 gene taxon:4530 20121108 Gramene +GR_gene GR:0060760 RIV2 TO:0001159 GR_REF:6975 IMP T RICE VIVIPARY 2 riv2|rice vivipary-2|riv2|rice vivipary-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060764 RL1 TO:0000180 GR_REF:1801 IMP T ROLLED LEAF 1 rolled leaf-1|rl1|cul8|curl leaf-8|cul8|curl leaf-8 gene taxon:4530 20121108 Gramene GR_gene GR:0060764 RL1 TO:0000370 GR_REF:1801 IMP T ROLLED LEAF 1 rolled leaf-1|rl1|cul8|curl leaf-8|cul8|curl leaf-8 gene taxon:4530 20121108 Gramene GR_gene GR:0060764 RL1 TO:0000492 GR_REF:1801 IMP T ROLLED LEAF 1 rolled leaf-1|rl1|cul8|curl leaf-8|cul8|curl leaf-8 gene taxon:4530 20121108 Gramene @@ -1469,8 +1469,8 @@ GR_gene GR:0061135 sbe2 TO:0000097 GR_REF:10769 IMP T starch branching enzyme- GR_gene GR:0061136 Sd14 TO:0000576 GR_REF:0 IMP T Semidwarf-14 Dominant semidwarf|Sd(t) gene taxon:4530 20121108 Gramene GR_gene GR:0061137 sd15 TO:0000576 GR_REF:0 IMP T semidwarf-15 sd-t|semidwarf gene taxon:4530 20121108 Gramene GR_gene GR:0061138 sd16 TO:0000576 GR_REF:0 IMP T semidwarf-16 sd-n|semidwarf gene taxon:4530 20121108 Gramene -GR_gene GR:0061139 Sdr3 TO:0000253 GR_REF:0 IMP T Seed dormancy-3 gene taxon:4530 20121108 Gramene -GR_gene GR:0061140 Sdr4 TO:0000253 GR_REF:0 IMP T Seed dormancy-4 gene taxon:4530 20121108 Gramene +GR_gene GR:0061139 Sdr3 TO:0001159 GR_REF:0 IMP T Seed dormancy-3 gene taxon:4530 20121108 Gramene +GR_gene GR:0061140 Sdr4 TO:0001159 GR_REF:0 IMP T Seed dormancy-4 gene taxon:4530 20121108 Gramene GR_gene GR:0061141 SH TO:0000473 GR_REF:10046 IMP T SHATTERING Seed shattering|Sh(t)*|Sh6|Shattering-6|SH1|Shattering 1|Sh6|Shattering-6 gene taxon:4530 20121108 Gramene GR_gene GR:0061159 An10 TO:0000072 GR_REF:9674 IMP T Awn-10 An5(t)*|Awn-5 gene taxon:4530 20121108 Gramene GR_gene GR:0061160 An11 TO:0000072 GR_REF:9674 IMP T Awn-11 Awn-7|An7(t)* gene taxon:4530 20121108 Gramene -- 2.34.1