From 2150593e2bf46bff3687d58a868622dbe90001d5 Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Wed, 2 Jul 2025 15:41:53 -0700 Subject: [PATCH] Fixed annotations, removed duplicated synonyms --- to-associations/to_gene_Oryza_Gramene.assoc | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index ac007db..40e2c56 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -515,8 +515,8 @@ GR_gene GR:0060322 FC1 TO:0000339 GR_REF:5883 IMP T FINE CULM 1 OsTB1|fc1|fine GR_gene GR:0060322 FC1 TO:0000346 GR_REF:5883 IMP T FINE CULM 1 OsTB1|fc1|fine culm-1|fc1|fine culm-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060364 GF2 TO:0000264 GR_REF:5883 IMP T GOLD FURROWS OF HULL 2 gf2|gold furrows of hull-2|gf2|gold furrows of hull-2 gene taxon:4530 20121108 Gramene GR_gene GR:0060437 GT TO:0000462 GR_REF:6194 IMP T HIGH GELATINIZATION TEMPERATURE Gt|High gelatinization temperature|Gt|High gelatinization temperature gene taxon:4530 20121108 Gramene -GR_gene GR:0060438 H TO:0000489 GR_REF:6194 IMP T HARDNESS OF COOKED RICE Hardness of cooked rice|H(t)*|Hcr|Hardness of cooked rice|Hcr|Hardness of cooked rice gene taxon:4530 20121108 Gramene -GR_gene GR:0060438 H TO:0000587 GR_REF:6194 IMP T HARDNESS OF COOKED RICE Hardness of cooked rice|H(t)*|Hcr|Hardness of cooked rice|Hcr|Hardness of cooked rice gene taxon:4530 20121108 Gramene +GR_gene GR:0060438 H TO:0000196 GR_REF:6194 IMP T HARDNESS OF COOKED RICE Hardness of cooked rice|H(t)*|Hcr gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060438 H TO:0000587 GR_REF:6194 IMP T HARDNESS OF COOKED RICE Hardness of cooked rice|H(t)*|Hcr gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060446 HG TO:0000055 GR_REF:2434 IMP T HAIRY GLUME Fg|Hg|Hairy glume|Hg|Hairy glume gene taxon:4530 20121108 Gramene GR_gene GR:0060446 HG TO:0000417 GR_REF:2434 IMP T HAIRY GLUME Fg|Hg|Hairy glume|Hg|Hairy glume gene taxon:4530 20121108 Gramene GR_gene GR:0060446 HG TO:0000419 GR_REF:2434 IMP T HAIRY GLUME Fg|Hg|Hairy glume|Hg|Hairy glume gene taxon:4530 20121108 Gramene @@ -681,8 +681,8 @@ GR_gene GR:0060762 RK2 TO:0000287 GR_REF:6091 IMP T ROUND KERNEL 2 rk2|round k GR_gene GR:0060763 RK3 TO:0000975 GR_REF:3816 IMP T ROUND KERNEL 3 Rk3|Round kernel-3|Rk3|Round kernel-3 gene taxon:4530 20121108 Gramene GR_gene GR:0060763 RK3 TO:0000287 GR_REF:3816 IMP T ROUND KERNEL 3 Rk3|Round kernel-3|Rk3|Round kernel-3 gene taxon:4530 20121108 Gramene GR_gene GR:0060807 skr TO:0000391 GR_REF:5859 IMP T suppressor for grain size (Kr1, Kr2) gene taxon:4530 20121108 Gramene -GR_gene GR:0060838 SBE1 TO:0000489 GR_REF:3076 IMP T STARCH BRANCHING ENZYME 1 QEI|sbe1|starch branching enzyme-1(Q enzyme 1)|sbe1|starch branching enzyme-1(Q enzyme 1) gene taxon:4530 20121108 Gramene -GR_gene GR:0060839 SBEIII* TO:0000489 GR_REF:1311 IMP T STARCH BRANCHING ENZYME III Starch branching enzyme III|SBEIII|Sbe3|Starch branching enzyme-3|Sbe3|Starch branching enzyme-3 gene taxon:4530 20121108 Gramene +GR_gene GR:0060838 SBE1 TO:0000097 GR_REF:3076 IMP T STARCH BRANCHING ENZYME 1 QEI|sbe1|starch branching enzyme-1(Q enzyme 1) gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060839 SBEIII* TO:0000097 GR_REF:1311 IMP T STARCH BRANCHING ENZYME III SBEIII|Sbe3|Starch branching enzyme-3 gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060896 SLG TO:0000079 GR_REF:6396 IMP T SLENDER GLUME mutator|slg|slender glume|slg|slender glume gene taxon:4530 20121108 Gramene GR_gene GR:0060896 SLG TO:0000145 GR_REF:6396 IMP T SLENDER GLUME mutator|slg|slender glume|slg|slender glume gene taxon:4530 20121108 Gramene GR_gene GR:0060896 SLG TO:0000207 GR_REF:6396 IMP T SLENDER GLUME mutator|slg|slender glume|slg|slender glume gene taxon:4530 20121108 Gramene @@ -1116,8 +1116,8 @@ GR_gene GR:0061184 Rhz3 TO:0000257 GR_REF:9675 IMP T Rhizomatous from O. longi GR_gene GR:0061185 Pi24 TO:0000468 GR_REF:10051 IMP T Magnaporthe grisea resistance-24 Pi24(t)|RMg59 gene taxon:4530 20121108 Gramene GR_gene GR:0061186 Pi25 TO:0000468 GR_REF:10051 IMP T Magnaporthe grisea resistance-25 Pi25(t)|RMg60 gene taxon:4530 20121108 Gramene GR_gene GR:0061188 Xa25 TO:0000175 GR_REF:10779 IMP T Xanthomonas oryzae pv. oryzae resistance-25 Xanthomonas campestris pv. oryzae resistance-25|RXa28|Xa25* gene taxon:4530 20121108 Gramene -GR_gene GR:0061189 Sdb1 TO:0000489 GR_REF:988 IMP T Starch debranching enzyme-1 Starch debranching (R-enzyme)|Re gene taxon:4530 20121108 Gramene -GR_gene GR:0061190 Sdb2 TO:0000489 GR_REF:1031 IMP T Starch debranching enzyme-2 Starch debranching-2|ISA gene taxon:4530 20121108 Gramene +GR_gene GR:0061189 Sdb1 TO:0000196 GR_REF:988 IMP T Starch debranching enzyme-1 Starch debranching (R-enzyme)|Re gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0061190 Sdb2 TO:0000196 GR_REF:1031 IMP T Starch debranching enzyme-2 Starch debranching-2|ISA gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0061191 sgr TO:0000249 GR_REF:9779 IMP T stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene GR_gene GR:0061191 sgr TO:0000298 GR_REF:9779 IMP T stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene GR_gene GR:0061191 sgr TO:0000326 GR_REF:9779 IMP T stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene @@ -1196,7 +1196,7 @@ GR_gene GR:0060511 LP2 TO:0000079 GR_REF:4517 IMP T LONG PALEA 2 lp2|long pale GR_gene GR:0060512 LR TO:0000276 GR_REF:5931 IMP T LEAF ROLLING UNDER DROUGHT STRESS lr|leaf unrolling under drought stress|lr|leaf unrolling under drought stress gene taxon:4530 20121108 Gramene GR_gene GR:0060513 LRT1 TO:0000227 GR_REF:6175 IMP T DEFICIENCY OF LATERAL ROOTS Deficiency of lateral roots|Lrt1|Lateral root-1|Lrt1|Lateral root-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060514 LRT2 TO:0000227 GR_REF:6175 IMP T REDUCED GROWTH OF LATERAL ROOTS reduced growth of lateral roots|lrt2|lateral root-2|lrt2|lateral root-2 gene taxon:4530 20121108 Gramene -GR_gene GR:0060519 MAN TO:0000489 GR_REF:6044 IMP T MANNAN IN ENDOSPERM CELL WALL Man|Mannan in endosperm cell wall|Man|Mannan in endosperm cell wall gene taxon:4530 20121108 Gramene +GR_gene GR:0060519 MAN TO:0006007 GR_REF:6044 IMP T MANNAN IN ENDOSPERM CELL WALL Man|Mannan in endosperm cell wall gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060527 MLS1 TO:0000053 GR_REF:2096 IMP T MALFORMED LEMMA 1 mls1|malformed lemma-1|mls1|malformed lemma-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060527 MLS1 TO:0000079 GR_REF:2096 IMP T MALFORMED LEMMA 1 mls1|malformed lemma-1|mls1|malformed lemma-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060527 MLS1 TO:0000436 GR_REF:2096 IMP T MALFORMED LEMMA 1 mls1|malformed lemma-1|mls1|malformed lemma-1 gene taxon:4530 20121108 Gramene @@ -1465,7 +1465,7 @@ GR_gene GR:0061133 RYMV TO:0000088 GR_REF:7803 IMP T Yellow mottle virus resis GR_gene GR:0061133 RYMV TO:0000148 GR_REF:7803 IMP T Yellow mottle virus resistance gene taxon:4530 20121108 Gramene GR_gene GR:0061133 RYMV TO:0000164 GR_REF:7803 IMP T Yellow mottle virus resistance gene taxon:4530 20121108 Gramene GR_gene GR:0061134 Sal6 TO:0000429 GR_REF:3336 IMP T Salt tolerance-6 Plasma membrane H+-ATPase gene (Salt tolerance)|OSA3* gene taxon:4530 20121108 Gramene -GR_gene GR:0061135 sbe2 TO:0000489 GR_REF:10769 IMP T starch branching enzyme-2(Q enzyme 2) QEII gene taxon:4530 20121108 Gramene +GR_gene GR:0061135 sbe2 TO:0000097 GR_REF:10769 IMP T starch branching enzyme-2(Q enzyme 2) QEII gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0061136 Sd14 TO:0000576 GR_REF:0 IMP T Semidwarf-14 Dominant semidwarf|Sd(t) gene taxon:4530 20121108 Gramene GR_gene GR:0061137 sd15 TO:0000576 GR_REF:0 IMP T semidwarf-15 sd-t|semidwarf gene taxon:4530 20121108 Gramene GR_gene GR:0061138 sd16 TO:0000576 GR_REF:0 IMP T semidwarf-16 sd-n|semidwarf gene taxon:4530 20121108 Gramene -- 2.34.1