From 33734e7031721ad258a31e2f4bcbfed769a84e3d Mon Sep 17 00:00:00 2001 From: cooperl09 Date: Sat, 16 Aug 2025 11:49:03 -0700 Subject: [PATCH] Fixed annotations --- to-associations/to_gene_Oryza_Gramene.assoc | 56 ++++++++++----------- 1 file changed, 28 insertions(+), 28 deletions(-) diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index 146c0df..bf24dc2 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -2,26 +2,26 @@ !DB DB_Object_ID DB_Object_Symbol Qualifier GOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by GR_gene GR:0060141 CL TO:0000089 GR_REF:1793 IMP T CLUSTERED SPIKELETS Cl|Clustered spikelets|Cl|Clustered spikelets gene taxon:4530 20121108 Gramene GR_gene GR:0060141 CL TO:0000180 GR_REF:1793 IMP T CLUSTERED SPIKELETS Cl|Clustered spikelets|Cl|Clustered spikelets gene taxon:4530 20121108 Gramene -GR_gene GR:0060146 [CMS-BO] TO:0000232 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY BO [cms-bo]|`Chinsurah boro 2' cytoplasm|[cms-bo]|'Chinsurah boro II' cytoplasm|[cms-bo]|'Chinsurah boro II' cytoplasm|LOC_Osm1g00370 gene taxon:4530 20121108 Gramene -GR_gene GR:0060148 [CMS-DRW21018] TO:0000232 GR_REF:5604 IMP T CYTOPLASMIC MALE STERILITY DRW21018 [cms-DRW21018]|[cms-DRW21018]|'DRW21018' cytoplasm|[cms-DRW21018]|'DRW21018' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060149 [CMS-DRW21030] TO:0000232 GR_REF:5604 IMP T CYTOPLASMIC MALE STERILITY DRW21030 [cms-DRW21030]|[cms-DRW21030]|'DRW21030' cytoplasm|[cms-DRW21030]|'DRW21030' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060150 [CMS-DRW21039] TO:0000232 GR_REF:5604 IMP T CYTOPLASMIC MALE STERILITY DRW21039 [cms-DRW21039]|[cms-DRW21039]|'DRW21039' cytoplasm|[cms-DRW21039]|'DRW21039' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060153 [CMS-IR66707A] TO:0000232 GR_REF:5552 IMP T CYTOPLASMIC MALE STERILITY IR66707A Oryza perennis Acc. 104823 cytoplasm|[cms-IR66707A]|Oryza perennis Acc104823 cytoplasm|[cms-IR66707A]|Oryza perennis Acc104823 cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000232 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA [cms-Kalinga-I]|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene -GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000280 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA [cms-Kalinga-I]|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene -GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000303 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA [cms-Kalinga-I]|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance|[cms-Kalinga-I]|Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene -GR_gene GR:0060155 [CMS-KHIABORO] TO:0000232 GR_REF:5552 IMP T CYTOPLASMIC MALE STERILITY KHIABORO [cms-Khiaboro]|`Khiaboro' cytoplasm|[cms-Khiaboro]|'Khiaboro' cytoplasm|[cms-Khiaboro]|'Khiaboro' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060156 [CMS-ID] TO:0000232 GR_REF:6419 IMP T CYTOPLASMIC MALE STERILITY ID `Lead rice' cytoplasm|[cms-ld]|[cms-ld]|'Lead rice' cytoplasm|[cms-ld]|'Lead rice' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060157 [CMS-RPW21111] TO:0000232 GR_REF:5604 IMP T CYTOPLASMIC MALE STERILITY RPW21111 [cms-DPW21111]|[cms-RPW21111]|'RPW21111' cytoplasm|[cms-RPW21111]|'RPW21111' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060159 [CMS-TA] TO:0000232 GR_REF:5713 IMP T CYTOPLASMIC MALE STERILITY TA `TA820' cytoplasm|[cms-TA]|[cms-TA]|'TA820' cytoplasm|[cms-TA]|'TA820' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060160 [CMS-UR27] TO:0000232 GR_REF:6358 IMP T CYTOPLASMIC MALE STERILITY UR27 [cms-UR27]|`UR27F' cytoplasm|[cms-UR27]|'UR27F' cytoplasm|[cms-UR27]|'UR27F' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060161 [CMS-UR89] TO:0000232 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR89 `UR89F' cytoplasm|[cms-UR89]|[cms-UR89]|'UR89F' cytoplasm|[cms-UR89]|'UR89F' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060162 [CMS-UR102] TO:0000232 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR102 `UR102F' cytoplasm|[cms-UR102]|[cms-UR102]|'UR102F' cytoplasm|[cms-UR102]|'UR102F' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060163 [CMS-UR104] TO:0000232 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR104 [cms-UR104]|`UR104F' cytoplasm|[cms-UR104]|'UR104F' cytoplasm|[cms-UR104]|'UR104F' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060164 [CMS-UR106] TO:0000232 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR106 [cms-UR106]|`UR106F' cytoplasm|[cms-UR106]|'UR106F' cytoplasm|[cms-UR106]|'UR106F' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060165 [CMS-VN1] TO:0000232 GR_REF:5604 IMP T CYTOPLASMIC MALE STERILITY VN 1 [cms-VN1]|[cms-VN1]|'VN1' cytoplasm|[cms-VN1]|'VN1' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060168 [cms-Miz4] TO:0000232 GR_REF:6086 IMP T 'Miz4' cytoplasm `Miz 4' cytoplasm|[cms-Miz4] gene taxon:4530 20121108 Gramene -GR_gene GR:0060169 [cms-Miz21] TO:0000232 GR_REF:6087 IMP T 'Miz21' cytoplasm `Miz 21' cytoplasm|[cms-Miz21] gene taxon:4530 20121108 Gramene +GR_gene GR:0060146 [CMS-BO] TO:0000580 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY BO [cms-bo]|`Chinsurah boro 2' cytoplasm|LOC_Osm1g00370 gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060148 [CMS-DRW21018] TO:0000580 DOI:10.1111/j.1439-0523.1997.tb02188.x IMP T CYTOPLASMIC MALE STERILITY DRW21018 'DRW21018' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060149 [CMS-DRW21030] TO:0000580 DOI:10.1111/j.1439-0523.1997.tb02188.x IMP T CYTOPLASMIC MALE STERILITY DRW21030 'DRW21030' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060150 [CMS-DRW21039] TO:0000580 DOI:10.1111/j.1439-0523.1997.tb02188.x IMP T CYTOPLASMIC MALE STERILITY DRW21039 'DRW21039' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060153 [CMS-IR66707A] TO:0000580 GR_REF:5552 IMP T CYTOPLASMIC MALE STERILITY IR66707A Oryza perennis Acc104823 cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000580 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000280 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene +GR_gene GR:0060154 [CMS-KALINGA-I] TO:0000303 GR_REF:5870 IMP T CYTOPLASMIC MALE STERILITY KALINGA Cytoplasmic controlled cold tolerance gene taxon:4530 20121108 Gramene +GR_gene GR:0060155 [CMS-KHIABORO] TO:0000580 GR_REF:5552 IMP T CYTOPLASMIC MALE STERILITY KHIABORO `Khiaboro' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060156 [CMS-ID] TO:0000580 GR_REF:6419 IMP T CYTOPLASMIC MALE STERILITY ID `Lead rice' cytoplasm|[cms-ld] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060157 [CMS-RPW21111] TO:0000580 DOI:10.1111/j.1439-0523.1997.tb02188.x IMP T CYTOPLASMIC MALE STERILITY RPW21111 [cms-DPW21111]|'RPW21111' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060159 [CMS-TA] TO:0000580 GR_REF:5713 IMP T CYTOPLASMIC MALE STERILITY TA `TA820' cytoplasm|[cms-TA] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060160 [CMS-UR27] TO:0000580 GR_REF:6358 IMP T CYTOPLASMIC MALE STERILITY UR27 [cms-UR27]|`UR27F' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060161 [CMS-UR89] TO:0000580 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR89 `UR89F' cytoplasm|[cms-UR89] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060162 [CMS-UR102] TO:0000580 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR102 `UR102F' cytoplasm|[cms-UR102] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060163 [CMS-UR104] TO:0000580 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR104 [cms-UR104]|`UR104F' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060164 [CMS-UR106] TO:0000580 GR_REF:5671 IMP T CYTOPLASMIC MALE STERILITY UR106 [cms-UR106]|`UR106F' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060165 [CMS-VN1] TO:0000580 DOI:10.1111/j.1439-0523.1997.tb02188.x IMP T CYTOPLASMIC MALE STERILITY VN 1 [cms-VN1]|'VN1' cytoplasm|[cms-VN1] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060168 [cms-Miz4] TO:0000580 GR_REF:6086 IMP T 'Miz4' cytoplasm `Miz 4' cytoplasm|[cms-Miz4] gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060169 [cms-Miz21] TO:0000580 GR_REF:6087 IMP T 'Miz21' cytoplasm `Miz 21' cytoplasm|[cms-Miz21] gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060174 CPS TO:0000079 GR_REF:3024 IMP T COMPACT PANICLE STERILE cps|compact panicle sterile|cps|compact panicle sterile gene taxon:4530 20121108 Gramene GR_gene GR:0060174 CPS TO:0000485 GR_REF:3024 IMP T COMPACT PANICLE STERILE cps|compact panicle sterile|cps|compact panicle sterile gene taxon:4530 20121108 Gramene GR_gene GR:0060175 CRL1 TO:0000227 GR_REF:6082 IMP T CROWN ROOTLESS 1 crl1|crown rootless-1|crl1|crown rootless-1 gene taxon:4530 20121108 Gramene @@ -269,7 +269,7 @@ GR_gene GR:0060629 PI TO:0000468 GR_REF:1508 IMP T PYRICULARIA ORYZAE RESISTAN GR_gene GR:0061067 Bph15 TO:0000424 GR_REF:6090 IMP T Brown planthopper resistance-15 Brown planthopper resistance introduced from Oryza australiensis|Qbp2 gene taxon:4530 20121108 Gramene GR_gene GR:0061068 rrl1 TO:0000227 GR_REF:6870 IMP T reduced root length-1 gene taxon:4530 20121108 Gramene GR_gene GR:0061069 rrl2 TO:0000227 GR_REF:6870 IMP T reduced root length-2 gene taxon:4530 20121108 Gramene -GR_gene GR:0060147 [CMS-CW] TO:0000232 GR_REF:5681 IMP T CYTOPLASMIC MALE STERILITY CW Chinese wild rice cytoplasm|[cms-CW]|[cms-CW]|Chinese wild rice cytoplasm|[cms-CW]|Chinese wild rice cytoplasm gene taxon:4530 20121108 Gramene +GR_gene GR:0060147 [CMS-CW] TO:0000580 GR_REF:5681 IMP T CYTOPLASMIC MALE STERILITY CW Chinese wild rice cytoplasm|[cms-CW] gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060016 AE1 TO:0000196 GR_REF:5683 IMP T AMYLOSE EXTENDER 1 High amylose mutant|ae1|amylose extender-1|ae1|amylose extender-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060016 AE1 TO:0000487 GR_REF:5683 IMP T AMYLOSE EXTENDER 1 High amylose mutant|ae1|amylose extender-1|ae1|amylose extender-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060016 AE1 TO:0000587 GR_REF:5683 IMP T AMYLOSE EXTENDER 1 High amylose mutant|ae1|amylose extender-1|ae1|amylose extender-1 gene taxon:4530 20121108 Gramene @@ -408,11 +408,11 @@ GR_gene GR:0060116 Ce2 TO:0000422 GR_REF:5666 IMP T Cercospora resistance-2 g GR_gene GR:0060129 CHS1 TO:0000432 GR_REF:594 IMP T CHLOROSIS CAUSED BY LOW TEMPERATURE 1 chs1|chlorosis caused by low temperature-1|chs1|chlorosis caused by low temperature-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060129 CHS1 TO:0000495 GR_REF:594 IMP T CHLOROSIS CAUSED BY LOW TEMPERATURE 1 chs1|chlorosis caused by low temperature-1|chs1|chlorosis caused by low temperature-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060143 CLW TO:0000079 GR_REF:3024 IMP T CLAW SHAPED SPIKELET clw|claw shaped spikelet|clw|claw shaped spikelet gene taxon:4530 20121108 Gramene -GR_gene GR:0060145 [CMS-ARC] TO:0000232 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY ARC [cms-ARC] [mt]|`ARC13829-26' cytoplasm|[cms-ARC]|ARC13829-26 cytoplasm|[cms-ARC]|ARC13829-26 cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060151 [CMS-GAM] TO:0000232 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY GAM [cms-GAM]|Gambiaca cytoplasm|[cms-GAM]|Gambiaca cytoplasm|[cms-GAM]|Gambiaca cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060152 [CMS-HL] TO:0000232 GR_REF:6007 IMP T CYTOPLASMIC MALE STERILITY HL [cms-HL]|HL-group cytoplasm|[cms-HL]|HL-group cytoplasm|[cms-HL]|HL-group cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060158 [CMS-SP] TO:0000232 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY SP [cms-sp]|`MS577A' cytoplasm|[cms-sp]|MS577A cytoplasm|[cms-sp]|MS577A cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060166 [CMS-WA] TO:0000232 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY WA WA-group cytoplasm|[cms-WA]|[cms-WA]|WA-group cytoplasm|[cms-WA]|WA-group cytoplasm gene taxon:4530 20121108 Gramene +GR_gene GR:0060145 [CMS-ARC] TO:0000580 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY ARC [cms-ARC] [mt]|`ARC13829-26' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060151 [CMS-GAM] TO:0000580 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY GAM [cms-GAM]|Gambiaca cytoplasm| gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060152 [CMS-HL] TO:0000580 GR_REF:6007 IMP T CYTOPLASMIC MALE STERILITY HL [cms-HL]|HL-group cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060158 [CMS-SP] TO:0000580 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY SP [cms-sp]|`MS577A' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060166 [CMS-WA] TO:0000580 GR_REF:6006 IMP T CYTOPLASMIC MALE STERILITY WA WA-group cytoplasm|[cms-WA] gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060189 D6 TO:0000089 GR_REF:6242 IMP T DWARF EBISUMOCHI DWARF d34|ebisumochi dwarf or tankanshirazasa dwarf|dwf6|d6|dwarf-6|d6|dwarf-6 gene taxon:4530 20121108 Gramene GR_gene GR:0060189 D6 TO:0000492 GR_REF:6242 IMP T DWARF EBISUMOCHI DWARF d34|ebisumochi dwarf or tankanshirazasa dwarf|dwf6|d6|dwarf-6|d6|dwarf-6 gene taxon:4530 20121108 Gramene GR_gene GR:0060189 D6 TO:0000576 GR_REF:6242 IMP T DWARF EBISUMOCHI DWARF d34|ebisumochi dwarf or tankanshirazasa dwarf|dwf6|d6|dwarf-6|d6|dwarf-6 gene taxon:4530 20121108 Gramene @@ -805,8 +805,8 @@ GR_gene GR:0060106 C TO:0000364 GR_REF:487 IMP T CHROMOGEN FOR ANTHOCYANIN Chr GR_gene GR:0060106 C TO:0000367 GR_REF:487 IMP T CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin|Cp|Chromogen|Cp|Chromogen gene taxon:4530 20121108 Gramene GR_gene GR:0060106 C TO:0000400 GR_REF:487 IMP T CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin|Cp|Chromogen|Cp|Chromogen gene taxon:4530 20121108 Gramene GR_gene GR:0060106 C TO:0000426 GR_REF:487 IMP T CHROMOGEN FOR ANTHOCYANIN Chromogen for anthocyanin|Cp|Chromogen|Cp|Chromogen gene taxon:4530 20121108 Gramene -GR_gene GR:0060144 [CMS-AK] TO:0000232 GR_REF:5881 IMP T CYTOPLASMIC MALE STERILITY AK [cms-jp]|[cms-ak]|'Akebono' cytoplasm|[cms-ak]|'Akebono' cytoplasm gene taxon:4530 20121108 Gramene -GR_gene GR:0060167 [CMS-54257] TO:0000232 GR_REF:10928 IMP T CYTOPLASMIC MALE STERILITY 54257 [cms-54257]|Cytoplasmic mutant induced by somaclonal variation|[cms-54257]|Cytoplasmic mutant induced by somaclonal variation gene taxon:4530 20121108 Gramene +GR_gene GR:0060144 [CMS-AK] TO:0000580 GR_REF:5881 IMP T CYTOPLASMIC MALE STERILITY AK [cms-jp]|[cms-ak]|'Akebono' cytoplasm gene taxon:4530 20121108 Gramene|TO:cooperl +GR_gene GR:0060167 [CMS-54257] TO:0000580 GR_REF:10928 IMP T CYTOPLASMIC MALE STERILITY 54257 [cms-54257]|Cytoplasmic mutant induced by somaclonal variation gene taxon:4530 20121108 Gramene|TO:cooperl GR_gene GR:0060173 COL TO:0000335 GR_REF:6959 IMP T COLLARLESS col|collarless|col|collarless gene taxon:4530 20121108 Gramene GR_gene GR:0060177 CTB TO:0000303 GR_REF:6113 IMP T COLD TOLERANCE AT THE BOOTING STAGE Cold tolerance at booting stage|Ctb|Ctb1|Cold tolerance at booting stage-1|Ctb1|Cold tolerance at booting stage-1 gene taxon:4530 20121108 Gramene GR_gene GR:0060178 CTS1 TO:0000303 GR_REF:5742 IMP T COLD TOLERANCE AT SEEDLING STAGE 1 Cts1|Cts1|Cold tolerance at seedling stage-1|Cts1|Cold tolerance at seedling stage-1 gene taxon:4530 20121108 Gramene -- 2.34.1