From 33baa48599a20a76ae939e261e270476bf190397 Mon Sep 17 00:00:00 2001 From: elserj Date: Fri, 26 Jan 2018 22:33:19 +0000 Subject: [PATCH] Replace column 4 text with blank, wasn't supposed to have the ontology term there svn path=/; revision=848 --- to-associations/to_gene_G.max_PPPP.assoc | 102 +-- .../to_gene_M.truncatula_PPPP.assoc | 144 ++-- to-associations/to_gene_O.sativa_PPPP.assoc | 620 +++++++++--------- .../to_gene_S.lycopersicum_PPPP.assoc | 280 ++++---- to-associations/to_gene_Z.mays_PPPP.assoc | 576 ++++++++-------- 5 files changed, 861 insertions(+), 861 deletions(-) diff --git a/to-associations/to_gene_G.max_PPPP.assoc b/to-associations/to_gene_G.max_PPPP.assoc index 67ed2d0..7bfa630 100644 --- a/to-associations/to_gene_G.max_PPPP.assoc +++ b/to-associations/to_gene_G.max_PPPP.assoc @@ -1,51 +1,51 @@ -!gaf-version: 2.0 -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -SoyBase Glyma01g36600 E2-1 flowering time trait TO:0002616 PMID:25774204 IMP T Glyma01g36600 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma02g05450 Wp flower color TO:0000537 PMID:25774204 IMP T Glyma02g05450 Pink flowers gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma02g05450 Wp seed coat color TO:0000190 PMID:25774204 IMP T Glyma02g05450 Seed coat Grey gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma02g39230 GmFAD3-2 oleic acid content TO:0005002 PMID:25774204 IMP T Glyma02g39230 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma03g32500 GmLPA1-1 seed phosphorus content TO:0002666 PMID:25774204 IMP T Glyma03g32500 low phytic acid concentration in seeds gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma04g11010 GmCRY1 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma04g11010 Late flowering under short day gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma04g11010 GmCRY1 blue light sensitivity TO:0000159 PMID:25774204 IMP T Glyma04g11010 blue light insensitive gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma05g27840 Eu1-1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma05g27840 Embryo urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g18890.1 RS2 raffinose content TO:0006004 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose concentration reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g18890.1 RS2 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose synthase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g18890.1 RS1-2 raffinose content TO:0006004 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose concentration gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g18890.1 RS1-2 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose synthase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g19820 AMDH2 BADH2 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma06g19820 Seed amino aldehyde dehydrogenase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g19820 AMDH2 BADH2 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma06g19820 Seed 2-acetyl-1-pyroline conc. Increased gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g21920 T trichome morphology trait TO:0000911 PMID:25774204 IMP T Glyma06g21920 Gray pubescence gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g21920 T hilum color TO:0000968 PMID:25774204 IMP T Glyma06g21920 tan hilum gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g23026 E1-1 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma06g23026 Early flowering under long days gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma06g23026 E1-1 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma06g23026 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma08g06630 ANR1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma08g06630 Anthocyanin Reductase activitiy reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma08g06630 ANR1 anthocyanin content TO:0000071Ê PMID:25774204 IMP T Glyma08g06630 Epicatechin conc. Increased gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma08g08970 Eu3-1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma08g08970 whole plant urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -!SoyBase Glyma09g36983 hilum color TO:0000968 PMID:25774204 IMP T Glyma09g36983 Brown hilum gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma09g36983 Glyma09g3698 seed coat color TO:0000190 PMID:25774204 IMP T Glyma09g36983 Brown seed coat color gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma10g42470 GmFAD2-1 oleic acid content TO:0005002 PMID:25774204 IMP T Glyma10g42470 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma11g27480 GmAS1-A enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma11g27480 High asparagine synthase activity in seed coats gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma11g27480 GmAS1-A endosperm storage protein content TO:0002653 PMID:25774204 IMP T Glyma11g27480 High seed protein content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma11g37250 EU4-1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma11g37250 Urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma14g04380 Eu2-1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma14g04380 whole plant urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma14g09510 GmASPGB1-A enzyme activity trait TO:0000599 PMID:25774204 IMP T Glyma14g09510 High asparaginase activity in seed coats gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma14g09510 GmASPGB1-1 endosperm storage protein content TO:0002653 PMID:25774204 IMP T Glyma14g09510 high seed protein content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma14g27990 GmFAB2-3 stearic acid content TO:0005003 PMID:25774204 IMP T Glyma14g27990 High seed stearic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma14g37350 GmFAD3-1 oleic acid content TO:0005002 PMID:25774204 IMP T Glyma14g37350 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g01980 GmLHY1 seedling hypocotyl length TO:0006065 PMID:25774204 IMP T Glyma16g01980 increased hypocotyl length gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g01980 GmLHY1 photoperiod sensitivity trait TO:0000229 PMID:25774204 IMP T Glyma16g01980 Abnormal circadian rythmn gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g01980 GmLHY1 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma16g01980 Delayed flowering under short-day regimen gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g04830 GmFT5-A photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma16g04830 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g04830 GmFT5-A flowering time trait TO:0002616 PMID:25774204 IMP T Glyma16g04830 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g26660 GmFT2-A photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma16g26660 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma16g26660 GmFT2-A flowering time trait TO:0002616 PMID:25774204 IMP T Glyma16g26660 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma18g02210 MIPS1 seedling growth and development trait TO:0000949 PMID:25774204 IMP T Glyma18g02210 emergence reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma18g06950 GmFAD3-3 oleic acid content TO:0005002 PMID:25774204 IMP T Glyma18g06950 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma19g35230 GmLPA1-2 seed phosphorus content TO:0002666 PMID:25774204 IMP T Glyma19g35230 low phytic acid concentration in seeds gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma19g41210 E3-1 flowering time trait TO:0002616 PMID:25774204 IMP T Glyma19g41210 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma19g41210 E3-1 far red light sensitivity TO:0000130 PMID:25774204 IMP T Glyma19g41210 Reduced far-red photo-reception gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma20g22160 PhyA2 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma20g22160 Photoperiod insensitivity gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma20g22160 PhyA2 photoperiod-sensitive flowering time trait TO:0000934 PMID:25774204 IMP T Glyma20g22160 Late flowering in short day gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma20g24530 GmFAD2-2 oleic acid content TO:0005002 PMID:25774204 IMP T Glyma20g24530 High seed oleic acid content gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma20g25000 Ln vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T Glyma20g25000 narrow leaflet gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson -SoyBase Glyma20g25000 Ln seed number TO:0000445 PMID:25774204 IMP T Glyma20g25000 Increased number of seeds per plant gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +!gaf-version: 2.0 +!DB DB_Object_ID DB_Object_Symbol TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +SoyBase Glyma01g36600 E2-1 TO:0002616 PMID:25774204 IMP T Glyma01g36600 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma02g05450 Wp TO:0000537 PMID:25774204 IMP T Glyma02g05450 Pink flowers gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma02g05450 Wp TO:0000190 PMID:25774204 IMP T Glyma02g05450 Seed coat Grey gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma02g39230 GmFAD3-2 TO:0005002 PMID:25774204 IMP T Glyma02g39230 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma03g32500 GmLPA1-1 TO:0002666 PMID:25774204 IMP T Glyma03g32500 low phytic acid concentration in seeds gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma04g11010 GmCRY1 TO:0000934 PMID:25774204 IMP T Glyma04g11010 Late flowering under short day gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma04g11010 GmCRY1 TO:0000159 PMID:25774204 IMP T Glyma04g11010 blue light insensitive gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma05g27840 Eu1-1 TO:0000599 PMID:25774204 IMP T Glyma05g27840 Embryo urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g18890.1 RS2 TO:0006004 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose concentration reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g18890.1 RS2 TO:0000599 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose synthase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g18890.1 RS1-2 TO:0006004 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose concentration gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g18890.1 RS1-2 TO:0000599 PMID:25774204 IMP T Glyma06g18890.1 Seed raffinose synthase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g19820 AMDH2 BADH2 TO:0000599 PMID:25774204 IMP T Glyma06g19820 Seed amino aldehyde dehydrogenase activity reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g19820 AMDH2 BADH2 TO:0000599 PMID:25774204 IMP T Glyma06g19820 Seed 2-acetyl-1-pyroline conc. Increased gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g21920 T TO:0000911 PMID:25774204 IMP T Glyma06g21920 Gray pubescence gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g21920 T TO:0000968 PMID:25774204 IMP T Glyma06g21920 tan hilum gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g23026 E1-1 TO:0000934 PMID:25774204 IMP T Glyma06g23026 Early flowering under long days gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma06g23026 E1-1 TO:0000934 PMID:25774204 IMP T Glyma06g23026 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma08g06630 ANR1 TO:0000599 PMID:25774204 IMP T Glyma08g06630 Anthocyanin Reductase activitiy reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma08g06630 ANR1 TO:0000071Ê PMID:25774204 IMP T Glyma08g06630 Epicatechin conc. Increased gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma08g08970 Eu3-1 TO:0000599 PMID:25774204 IMP T Glyma08g08970 whole plant urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +!SoyBase Glyma09g36983 TO:0000968 PMID:25774204 IMP T Glyma09g36983 Brown hilum gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma09g36983 Glyma09g3698 TO:0000190 PMID:25774204 IMP T Glyma09g36983 Brown seed coat color gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma10g42470 GmFAD2-1 TO:0005002 PMID:25774204 IMP T Glyma10g42470 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma11g27480 GmAS1-A TO:0000599 PMID:25774204 IMP T Glyma11g27480 High asparagine synthase activity in seed coats gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma11g27480 GmAS1-A TO:0002653 PMID:25774204 IMP T Glyma11g27480 High seed protein content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma11g37250 EU4-1 TO:0000599 PMID:25774204 IMP T Glyma11g37250 Urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma14g04380 Eu2-1 TO:0000599 PMID:25774204 IMP T Glyma14g04380 whole plant urease activity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma14g09510 GmASPGB1-A TO:0000599 PMID:25774204 IMP T Glyma14g09510 High asparaginase activity in seed coats gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma14g09510 GmASPGB1-1 TO:0002653 PMID:25774204 IMP T Glyma14g09510 high seed protein content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma14g27990 GmFAB2-3 TO:0005003 PMID:25774204 IMP T Glyma14g27990 High seed stearic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma14g37350 GmFAD3-1 TO:0005002 PMID:25774204 IMP T Glyma14g37350 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g01980 GmLHY1 TO:0006065 PMID:25774204 IMP T Glyma16g01980 increased hypocotyl length gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g01980 GmLHY1 TO:0000229 PMID:25774204 IMP T Glyma16g01980 Abnormal circadian rythmn gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g01980 GmLHY1 TO:0000934 PMID:25774204 IMP T Glyma16g01980 Delayed flowering under short-day regimen gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g04830 GmFT5-A TO:0000934 PMID:25774204 IMP T Glyma16g04830 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g04830 GmFT5-A TO:0002616 PMID:25774204 IMP T Glyma16g04830 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g26660 GmFT2-A TO:0000934 PMID:25774204 IMP T Glyma16g26660 Photoperiod insensitivity gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma16g26660 GmFT2-A TO:0002616 PMID:25774204 IMP T Glyma16g26660 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma18g02210 MIPS1 TO:0000949 PMID:25774204 IMP T Glyma18g02210 emergence reduced gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma18g06950 GmFAD3-3 TO:0005002 PMID:25774204 IMP T Glyma18g06950 High seed oleic acid content gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma19g35230 GmLPA1-2 TO:0002666 PMID:25774204 IMP T Glyma19g35230 low phytic acid concentration in seeds gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma19g41210 E3-1 TO:0002616 PMID:25774204 IMP T Glyma19g41210 Early flowering gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma19g41210 E3-1 TO:0000130 PMID:25774204 IMP T Glyma19g41210 Reduced far-red photo-reception gene taxon:3847 20150717 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma20g22160 PhyA2 TO:0000934 PMID:25774204 IMP T Glyma20g22160 Photoperiod insensitivity gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma20g22160 PhyA2 TO:0000934 PMID:25774204 IMP T Glyma20g22160 Late flowering in short day gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma20g24530 GmFAD2-2 TO:0005002 PMID:25774204 IMP T Glyma20g24530 High seed oleic acid content gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma20g25000 Ln TO:0000419 PMID:25774204 IMP T Glyma20g25000 narrow leaflet gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson +SoyBase Glyma20g25000 Ln TO:0000445 PMID:25774204 IMP T Glyma20g25000 Increased number of seeds per plant gene taxon:3847 20150720 Planteome:Laurel_Cooper|Planteome:Ethan_Johnson diff --git a/to-associations/to_gene_M.truncatula_PPPP.assoc b/to-associations/to_gene_M.truncatula_PPPP.assoc index 0b321ec..ec45be8 100644 --- a/to-associations/to_gene_M.truncatula_PPPP.assoc +++ b/to-associations/to_gene_M.truncatula_PPPP.assoc @@ -1,9 +1,9 @@ -!gaf-version: 2.0 -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -LIS ABE72958.1 CPK3 root nodule number TO:0000900 PMID:25774204 IMP T ABE72958.1 Increased number of root nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson +!gaf-version: 2.0 +!DB DB_Object_ID DB_Object_Symbol TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +LIS ABE72958.1 CPK3 TO:0000900 PMID:25774204 IMP T ABE72958.1 Increased number of root nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS ADC33495.1 VPY PMID:25774204 IMP ADC33495.1 Aborted mycorrhizae formation gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS ADC33495.1 VPY PMID:25774204 IMP ADC33495.1 Rhizobial Infection thread abnormal gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS ADC33495.1 VPY root nodule number TO:0000900 PMID:25774204 IMP T ADC33495.1 root nodulation decreased gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS ADC33495.1 VPY TO:0000900 PMID:25774204 IMP T ADC33495.1 root nodulation decreased gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 Ovules exposed by unfused carpel edges gene taxon:3880 20150702 Planteome:Ethan_Johnson !!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 abnomal ovules gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 either sepal-like or petal-like structures gene taxon:3880 20150702 Planteome:Ethan_Johnson @@ -14,100 +14,100 @@ LIS ADC33495.1 VPY root nodule number TO:0000900 PMID:25774204 IMP T ADC33495.1 !LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 small flowers gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 stigma sometimes absent gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 style sometimes absent gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM carpel anatomy and morphology trait TO:0006012 PMID:25774204 IMP T AFI56799.1 abnormal carpel gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM cotyledon anatomy and morphology trait TO:0000749 PMID:25774204 IMP T AFI56799.1 fused cotyledons gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM embryo shape TO:0000193 PMID:25774204 IMP T AFI56799.1 cylindrical embryos gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM female sterility TO:0000358 PMID:25774204 IMP T AFI56799.1 sterile carpels gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM male sterility TO:0000437 PMID:25774204 IMP T AFI56799.1 sterile stamens gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM shoot apical meristem development TO:0006020 PMID:25774204 IMP T AFI56799.1 aborted shoot apical meristem gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM stamen anatomy and morphology trait TO:0000215 PMID:25774204 IMP T AFI56799.1 abnormal stamen gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM trichome anatomy and morphology trait TO:0000911 PMID:25774204 IMP T AFI56799.1 abnormal carpel trichomes gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T AFI56799.1 fused leaflets gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T AFI56799.1 malformed juvenile vascular leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS CAD48198.1 ENOD40 tissue development trait TO:0006015 PMID:25774204 IMP T CAD48198.1 Abnormal tissue development gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0006012 PMID:25774204 IMP T AFI56799.1 abnormal carpel gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000749 PMID:25774204 IMP T AFI56799.1 fused cotyledons gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000193 PMID:25774204 IMP T AFI56799.1 cylindrical embryos gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000358 PMID:25774204 IMP T AFI56799.1 sterile carpels gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000437 PMID:25774204 IMP T AFI56799.1 sterile stamens gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0006020 PMID:25774204 IMP T AFI56799.1 aborted shoot apical meristem gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000215 PMID:25774204 IMP T AFI56799.1 abnormal stamen gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000911 PMID:25774204 IMP T AFI56799.1 abnormal carpel trichomes gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000419 PMID:25774204 IMP T AFI56799.1 fused leaflets gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS AFI56799.1 NAM TO:0000419 PMID:25774204 IMP T AFI56799.1 malformed juvenile vascular leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS CAD48198.1 ENOD40 TO:0006015 PMID:25774204 IMP T CAD48198.1 Abnormal tissue development gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Arbuscle formation decreased gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Arbuscle structure normal gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Reduced root Jasmonic Acid levels gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 mycorrhizae delayed colonization gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS CAR57918.1 MtCCD1 PMID:25774204 IMP CAR57918.1 Degenerate arbuscles gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS CAR57918.1 MtCCD1 carotene content TO:0000289 PMID:25774204 IMP T CAR57918.1 Apocarotenoid levels abnormal in roots gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS CAR57918.1 MtCCD1 TO:0000289 PMID:25774204 IMP T CAR57918.1 Apocarotenoid levels abnormal in roots gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr1g056530 HAP2.1 PMID:25774204 IMP Medtr1g056530 nonfunctional root nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr1g056530 HAP2.1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr1g056530 small root nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr1g056530 HAP2.1 TO:0000898 PMID:25774204 IMP T Medtr1g056530 small root nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 aborted infection threads gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 decreased rhizobial infection gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 nodule development arrested gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr1g101600 CBF4 root length TO:0000227 PMID:25774204 IMP T Medtr1g101600 Higher Primary root length gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr1g101600 CBF4 salt tolerance TO:0006001 PMID:25774204 IMP T Medtr1g101600 Salt-stress tolerance increased gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr1g101600 CBF4 TO:0000227 PMID:25774204 IMP T Medtr1g101600 Higher Primary root length gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr1g101600 CBF4 TO:0006001 PMID:25774204 IMP T Medtr1g101600 Salt-stress tolerance increased gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr2g005870 DMI1 PMID:25774204 IMP Medtr2g005870 Infection thread aborted gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr2g005870 DMI1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr2g005870 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr2g005870 DMI1 TO:0000900 PMID:25774204 IMP T Medtr2g005870 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr2g035020 GT3 (UGT73F3) PMID:25774204 IMP Medtr2g035020 Increased isoflavones in roots gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr2g035020 GT3 (UGT73F3) PMID:25774204 IMP Medtr2g035020 Reduced saponins in roots gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr2g035020 GT3 (UGT73F3) germination rate TO:0000430 PMID:25774204 IMP T Medtr2g035020 Seed germination delayed gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr2g035020 GT3 (UGT73F3) plant structure growth and development trait TO:0000928 PMID:25774204 IMP T Medtr2g035020 Plant growth stunted gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr2g035020 GT3 (UGT73F3) root branching TO:0000257 PMID:25774204 IMP T Medtr2g035020 Roots less branched gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr2g035020 GT3 (UGT73F3) root length TO:0000227 PMID:25774204 IMP T Medtr2g035020 Roots short gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr2g035020 GT3 (UGT73F3) TO:0000430 PMID:25774204 IMP T Medtr2g035020 Seed germination delayed gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr2g035020 GT3 (UGT73F3) TO:0000928 PMID:25774204 IMP T Medtr2g035020 Plant growth stunted gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr2g035020 GT3 (UGT73F3) TO:0000257 PMID:25774204 IMP T Medtr2g035020 Roots less branched gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr2g035020 GT3 (UGT73F3) TO:0000227 PMID:25774204 IMP T Medtr2g035020 Roots short gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr3g021350 cyp716A12 PMID:25774204 IMP Medtr3g021350 Impaired hemolytic saponin synthesis gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g021350 cyp716A12 plant structure growth and development trait TO:0000928 PMID:25774204 IMP T Medtr3g021350 Plant growth stunted gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g098560 SGL1 flower anatomy and morphology trait TO:0000499 PMID:25774204 IMP T Medtr3g098560 fused flowers gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g098560 SGL1 leaf shape TO:0000492 PMID:25774204 IMP T Medtr3g098560 simple, unifoliate (not compound) leaves gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g098560 SGL1 petiole length TO:0000766 PMID:25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g021350 cyp716A12 TO:0000928 PMID:25774204 IMP T Medtr3g021350 Plant growth stunted gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g098560 SGL1 TO:0000499 PMID:25774204 IMP T Medtr3g098560 fused flowers gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g098560 SGL1 TO:0000492 PMID:25774204 IMP T Medtr3g098560 simple, unifoliate (not compound) leaves gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g098560 SGL1 TO:0000766 PMID:25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr3g099620 bHLH1 PMID:25774204 IMP Medtr3g099620 Nodulation delayed gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g099620 bHLH1 plant organ growth and development trait TO:0000927 PMID:25774204 IMP T Medtr3g099620 reduced growth of aboveground plant organs gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr3g099620 bHLH1 vascular bundle development trait TO:0020109 PMID:25774204 IMP T Medtr3g099620 Assymetrical development of nodule vascular bundles gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g099620 bHLH1 TO:0000927 PMID:25774204 IMP T Medtr3g099620 reduced growth of aboveground plant organs gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr3g099620 bHLH1 TO:0020109 PMID:25774204 IMP T Medtr3g099620 Assymetrical development of nodule vascular bundles gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 A decrease in plants that form pink nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 Decreased rhizobial infection gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 reduced acetylene reduction gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106420 FLOT2 lateral root length TO:0001012 PMID:25774204 IMP T Medtr3g106420 Long primary lateral roots gene taxon:3880 20150702 Planteome:Ethan_Johnson -!LIS Medtr3g106420 FLOT2 root nodule number PMID:25774204 IMP Medtr3g106420 More no-nodule plants gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106420 FLOT2 root nodule number TO:0000900 PMID:25774204 IMP T Medtr3g106420 Fewer nodules per plant gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106420 FLOT2 seminal root length TO:0000586 PMID:25774204 IMP T Medtr3g106420 Decreased primary root length gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106420 FLOT2 TO:0001012 PMID:25774204 IMP T Medtr3g106420 Long primary lateral roots gene taxon:3880 20150702 Planteome:Ethan_Johnson +!LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 More no-nodule plants gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106420 FLOT2 TO:0000900 PMID:25774204 IMP T Medtr3g106420 Fewer nodules per plant gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106420 FLOT2 TO:0000586 PMID:25774204 IMP T Medtr3g106420 Decreased primary root length gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 A decrease in plants that form pink nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 aborted infection threads gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 decreased rhizobial infection gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 reduced acetylene reduction gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106430 FLOT4 root nodule number TO:0000900 PMID:25774204 IMP T Medtr3g106430 Fewer nodules per plant gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106430 FLOT4 root number TO:0000084 PMID:25774204 IMP T Medtr3g106430 Increased secondary roots gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106480 FLOT3 root length TO:0000227 PMID:25774204 IMP T Medtr3g106480 Decreased root length gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr3g106480 FLOT3 root weight TO:0000279 PMID:25774204 IMP T Medtr3g106480 Reduced root weight gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106430 FLOT4 TO:0000900 PMID:25774204 IMP T Medtr3g106430 Fewer nodules per plant gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106430 FLOT4 TO:0000084 PMID:25774204 IMP T Medtr3g106430 Increased secondary roots gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106480 FLOT3 TO:0000227 PMID:25774204 IMP T Medtr3g106480 Decreased root length gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr3g106480 FLOT3 TO:0000279 PMID:25774204 IMP T Medtr3g106480 Reduced root weight gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 Wild type nodulation response to ethylene gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 nodulation occurs in abnormal places on root gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 nodulation under high nitrogen gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr4g070970 SUNN root length TO:0000227 PMID:25774204 IMP T Medtr4g070970 short roots gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr4g070970 SUNN root nodule number TO:0000900 PMID:25774204 IMP T Medtr4g070970 increased number of root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr4g070970 SUNN TO:0000227 PMID:25774204 IMP T Medtr4g070970 short roots gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr4g070970 SUNN TO:0000900 PMID:25774204 IMP T Medtr4g070970 increased number of root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 aborted infection threads gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 decreased rhizobial infection gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 reduced acetylene reduction gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr4g084140 MtNAP1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Medtr4g084140 low nitrogenase activity in nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr4g084140 MtNAP1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr4g084140 root nodules undeveloped and small gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr4g084140 MtNAP1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr4g084140 Fewer root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr4g084140 MtNAP1 TO:0000599 PMID:25774204 IMP T Medtr4g084140 low nitrogenase activity in nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr4g084140 MtNAP1 TO:0000898 PMID:25774204 IMP T Medtr4g084140 root nodules undeveloped and small gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr4g084140 MtNAP1 TO:0000900 PMID:25774204 IMP T Medtr4g084140 Fewer root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr5g011250 ANS PMID:25774204 IMP Medtr5g011250 Reduced seed Oligomeric proanthocyanidin levels gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr5g011250 ANS anthocyanin content TO:0000071 PMID:25774204 IMP T Medtr5g011250 Reduced leaf Anthocyanin levels gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr5g011250 ANS TO:0000071 PMID:25774204 IMP T Medtr5g011250 Reduced leaf Anthocyanin levels gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr5g014400 PALM1 PMID:25774204 IMP Medtr5g014400 Distal lateral leaflets develop similarly to terminal leaflets gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr5g014400 PALM1 PMID:25774204 IMP Medtr5g014400 Rachis length decreased gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Medtr5g014400 Forms dissected leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Medtr5g014400 Palmate-like pentafoliate leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g014400 PALM1 petiole length TO:0000766 PMID:25774204 IMP T Medtr5g014400 Petiole length increased gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g014400 PALM1 TO:0000748 PMID:25774204 IMP T Medtr5g014400 Forms dissected leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g014400 PALM1 TO:0000748 PMID:25774204 IMP T Medtr5g014400 Palmate-like pentafoliate leaves gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g014400 PALM1 TO:0000766 PMID:25774204 IMP T Medtr5g014400 Petiole length increased gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr5g019040 NFP PMID:25774204 IMP Medtr5g019040 Infection thread aborted gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr5g019040 NFP PMID:25774204 IMP Medtr5g019040 root nodules absent gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr5g022030 CDPK1 PMID:25774204 IMP Medtr5g022030 mycorrhizal symbioses decreased gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g022030 CDPK1 root cortical cell length TO:0020108 PMID:25774204 IMP T Medtr5g022030 reduced root cell length gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g022030 CDPK1 root hair length TO:0002665 PMID:25774204 IMP T Medtr5g022030 reduced root hair length gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g022030 CDPK1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr5g022030 root nodulation decreased gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g022030 CDPK1 TO:0020108 PMID:25774204 IMP T Medtr5g022030 reduced root cell length gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g022030 CDPK1 TO:0002665 PMID:25774204 IMP T Medtr5g022030 reduced root hair length gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g022030 CDPK1 TO:0000898 PMID:25774204 IMP T Medtr5g022030 root nodulation decreased gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr5g026850 CYCLOPS PMID:25774204 IMP Medtr5g026850 inhibited mycorrhizal infection gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr5g026850 CYCLOPS PMID:25774204 IMP Medtr5g026850 inhibited rhizobial infection gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr5g026850 CYCLOPS root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr5g026850 arrested nodule development gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr5g026850 CYCLOPS TO:0000898 PMID:25774204 IMP T Medtr5g026850 arrested nodule development gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr5g030920 nork PMID:25774204 IMP Medtr5g030920 mycorrhizal symbioses absent gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g030920 nork root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of Nod factor gene taxon:3880 20150701 Planteome:Ethan_Johnson -LIS Medtr5g030920 nork root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of the rhizobial Sinorhizobium meliloti gene taxon:3880 20150701 Planteome:Ethan_Johnson +LIS Medtr5g030920 nork TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of Nod factor gene taxon:3880 20150701 Planteome:Ethan_Johnson +LIS Medtr5g030920 nork TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of the rhizobial Sinorhizobium meliloti gene taxon:3880 20150701 Planteome:Ethan_Johnson !LIS Medtr5g086120 LYK4 PMID:25774204 IMP Medtr5g086120 Infection thread aborted gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g086120 LYK4 root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g086120 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g086120 LYK4 TO:0000900 PMID:25774204 IMP T Medtr5g086120 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr5g086130 LYK3 PMID:25774204 IMP Medtr5g086130 Infection thread aborted gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr5g086130 LYK3 root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g086130 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr5g086130 LYK3 TO:0000900 PMID:25774204 IMP T Medtr5g086130 root nodules absent gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr6g071190 FCL1 PMID:25774204 IMP Medtr6g071190 Leaf rachis malformed gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr6g071190 FCL1 petiole length TO:0000766 PMID:25774204 IMP T Medtr6g071190 Short petiole gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr6g071190 FCL1 vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T Medtr6g071190 Fused leaflets gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr7g084970 FTa1 flowering time trait TO:0002616 PMID:25774204 IMP T Medtr7g084970 Delayed flowering gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr7g085040 FTc flower development trait TO:0000622 PMID:25774204 IMP T Medtr7g085040 Flower development normal under long days gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr6g071190 FCL1 TO:0000766 PMID:25774204 IMP T Medtr6g071190 Short petiole gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr6g071190 FCL1 TO:0000419 PMID:25774204 IMP T Medtr6g071190 Fused leaflets gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr7g084970 FTa1 TO:0002616 PMID:25774204 IMP T Medtr7g084970 Delayed flowering gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr7g085040 FTc TO:0000622 PMID:25774204 IMP T Medtr7g085040 Flower development normal under long days gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr7g085810 ERN PMID:25774204 IMP Medtr7g085810 Rhizobial colonization blocked gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr7g085810 ERN PMID:25774204 IMP Medtr7g085810 Signal transduction for nodulation blocked gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 Reduced autocatylic ethylene production gene taxon:3880 20150706 Planteome:Ethan_Johnson @@ -116,24 +116,24 @@ LIS Medtr7g085040 FTc flower development trait TO:0000622 PMID:25774204 IMP T M !LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 increased pathogenic fungal damage gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 increased persistant rhizobia infection gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 radial swelling of primary infection zone gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 gravity response trait TO:0002693 PMID:25774204 IMP T Medtr7g101410 No loss of geotropism gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of hypocotyl growth gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Medtr7g101410 reduced apical hook angle gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 root development trait TO:0000656 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of root growth gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 root hair length TO:0002665 PMID:25774204 IMP T Medtr7g101410 reduced ectopic root hairs gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr7g101410 Absence of nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr7g101410 Skl1 seedling cotyledon size TO:0000752 PMID:25774204 IMP T Medtr7g101410 large cotyledons gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0002693 PMID:25774204 IMP T Medtr7g101410 No loss of geotropism gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0000757 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of hypocotyl growth gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0000757 PMID:25774204 IMP T Medtr7g101410 reduced apical hook angle gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0000656 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of root growth gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0002665 PMID:25774204 IMP T Medtr7g101410 reduced ectopic root hairs gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0000900 PMID:25774204 IMP T Medtr7g101410 Absence of nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr7g101410 Skl1 TO:0000752 PMID:25774204 IMP T Medtr7g101410 large cotyledons gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr8g020200 ELF4 PMID:25774204 IMP Medtr8g020200 Circadian rhythm abnormal gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr8g043970 DMI3 PMID:25774204 IMP Medtr8g043970 mycorrhizal symbioses absent gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr8g043970 DMI3 root nodule number TO:0000900 PMID:25774204 IMP T Medtr8g043970 root nodule absent gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr8g058380 CDC16 auxin sensitivity TO:0000163 PMID:25774204 IMP T Medtr8g058380 Reduced auxin sensitivity by roots gene taxon:3880 20150706 Planteome:Ethan_Johnson -LIS Medtr8g058380 CDC16 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr8g058380 Increased nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr8g043970 DMI3 TO:0000900 PMID:25774204 IMP T Medtr8g043970 root nodule absent gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr8g058380 CDC16 TO:0000163 PMID:25774204 IMP T Medtr8g058380 Reduced auxin sensitivity by roots gene taxon:3880 20150706 Planteome:Ethan_Johnson +LIS Medtr8g058380 CDC16 TO:0000898 PMID:25774204 IMP T Medtr8g058380 Increased nodules gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased fungal spore germination gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased fungal spore production gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased mycorrhizal infections gene taxon:3880 20150706 Planteome:Ethan_Johnson !LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 aborted infection threads gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 arrested root nodule development gene taxon:3880 20150702 Planteome:Ethan_Johnson !LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 cytokinin response gene not induced by cytokinins gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr8g106150 MtCre1 cytokinin sensitivity TO:0000167 PMID:25774204 IMP T Medtr8g106150 root growth not inhibited by cytokinins gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr8g106150 MtCre1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr8g106150 Fewer root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson -LIS Medtr8g106150 MtCre1 root number TO:0000084 PMID:25774204 IMP T Medtr8g106150 Increased secondary roots gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr8g106150 MtCre1 TO:0000167 PMID:25774204 IMP T Medtr8g106150 root growth not inhibited by cytokinins gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr8g106150 MtCre1 TO:0000900 PMID:25774204 IMP T Medtr8g106150 Fewer root nodules gene taxon:3880 20150702 Planteome:Ethan_Johnson +LIS Medtr8g106150 MtCre1 TO:0000084 PMID:25774204 IMP T Medtr8g106150 Increased secondary roots gene taxon:3880 20150702 Planteome:Ethan_Johnson diff --git a/to-associations/to_gene_O.sativa_PPPP.assoc b/to-associations/to_gene_O.sativa_PPPP.assoc index 522f216..bb474f5 100644 --- a/to-associations/to_gene_O.sativa_PPPP.assoc +++ b/to-associations/to_gene_O.sativa_PPPP.assoc @@ -1,337 +1,337 @@ -!gaf-version: 2.0 -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -GR_gene GR:0800010 AID1 spikelet sterility TO:0000436 PMID:15247409 IMP T Os06g0181300 spikelet sterility gene taxon:4530 20150413 Planteome:Ethan_Johnson -GR_gene GR:0800010 AID1 tiller number TO:0000346 PMID:15247409 IMP T Os06g0181300 few tillers gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0800010 AID1 days to flowering TO:0000344 PMID:15247409 IMP T Os06g0181300 late flowering gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 leaf number TO:0000241 PMID:15950602 IMP T Os06g0665400 increased leaf number gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 primary branching of inflorescence TO:0000052 PMID:15950602 IMP T Os06g0665400 abnormal panicle phyllotaxy gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 inflorescence branching TO:0000050 PMID:15950602 IMP T Os06g0665400 decreased panicle branching gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 reproductive homeotic development trait TO:0002613 PMID:15950602 IMP T Os06g0665400 homeotic floral transformations gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 fertility related trait TO:0000420 PMID:15950602 IMP T Os06g0665400 reduced fertility gene taxon:4530 20150415 Planteome:Ethan_Johnson +!gaf-version: 2.0 +!DB DB_Object_ID DB_Object_Symbol TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +GR_gene GR:0800010 AID1 TO:0000436 PMID:15247409 IMP T Os06g0181300 spikelet sterility gene taxon:4530 20150413 Planteome:Ethan_Johnson +GR_gene GR:0800010 AID1 TO:0000346 PMID:15247409 IMP T Os06g0181300 few tillers gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0800010 AID1 TO:0000344 PMID:15247409 IMP T Os06g0181300 late flowering gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000241 PMID:15950602 IMP T Os06g0665400 increased leaf number gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000052 PMID:15950602 IMP T Os06g0665400 abnormal panicle phyllotaxy gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000050 PMID:15950602 IMP T Os06g0665400 decreased panicle branching gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0002613 PMID:15950602 IMP T Os06g0665400 homeotic floral transformations gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000420 PMID:15950602 IMP T Os06g0665400 reduced fertility gene taxon:4530 20150415 Planteome:Ethan_Johnson !GR_gene GR:0060058 APO1 PMID:15950602 IMP Os06g0665400 smaller rachis meristem gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 primary branch number TO:0000547 PMID:15950602 IMP T Os06g0665400 reduced primary branches gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 spikelet number TO:0000456 PMID:15950602 IMP T Os06g0665400 less than half the number of spikelets gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060058 APO1 secondary branch number TO:0000557 PMID:15950602 IMP T Os06g0665400 less than half the number of secondary branches gene taxon:4530 20150415 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 leaf flexibility TO:0000825 PMID:12953108 IMP T Os03g0416200 leaves brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 leaf flexibility TO:0000825 PMID:12953108 IMP T Os03g0416200 leaves brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 brittle culm TO:0000200 PMID:12953108 IMP T Os03g0416200 culms brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 brittle culm TO:0000200 PMID:12953108 IMP T Os03g0416200 culms brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 grain shattering TO:0000473 PMID:12953108 IMP T Os03g0416200 panicles brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060068 BC1 grain shattering TO:0000473 PMID:12953108 IMP T Os03g0416200 panicles brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000547 PMID:15950602 IMP T Os06g0665400 reduced primary branches gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000456 PMID:15950602 IMP T Os06g0665400 less than half the number of spikelets gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060058 APO1 TO:0000557 PMID:15950602 IMP T Os06g0665400 less than half the number of secondary branches gene taxon:4530 20150415 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000825 PMID:12953108 IMP T Os03g0416200 leaves brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000825 PMID:12953108 IMP T Os03g0416200 leaves brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000200 PMID:12953108 IMP T Os03g0416200 culms brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000200 PMID:12953108 IMP T Os03g0416200 culms brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000473 PMID:12953108 IMP T Os03g0416200 panicles brittle at green stage gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060068 BC1 TO:0000473 PMID:12953108 IMP T Os03g0416200 panicles brittle at mature stage gene taxon:4530 20150417 Planteome:Ethan_Johnson !GR_gene GR:0060068 BC1 PMID:12953108 IMP Os03g0416200 low content of alpha-cellulose in cell wall gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060070 BC3 stem strength TO:0000051 GR_REF:5651 IMP T Os02g0738900 weak culm gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060070 BC3 brittle culm TO:0000200 GR_REF:5651 IMP T Os02g0738900 brittle culm gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060070 BC3 panicle size TO:0006032 GR_REF:5651 IMP T Os02g0738900 short emergence of panicles gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0060070 BC3 panicle anatomy and morphology trait TO:0000847 GR_REF:5651 IMP T Os02g0738900 incomplete emergence of panicles gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060070 BC3 TO:0000051 GR_REF:5651 IMP T Os02g0738900 weak culm gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060070 BC3 TO:0000200 GR_REF:5651 IMP T Os02g0738900 brittle culm gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060070 BC3 TO:0006032 GR_REF:5651 IMP T Os02g0738900 short emergence of panicles gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0060070 BC3 TO:0000847 GR_REF:5651 IMP T Os02g0738900 incomplete emergence of panicles gene taxon:4530 20150417 Planteome:Ethan_Johnson !GR_gene GR:0060073 BC6 GR_REF:5933 IMP Os09g0422500 all parts of plant are extremely brittle gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0080018 BLE3 root length TO:0000227 PMID:16808934 IMP T Os05g0245300 short roots gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0080018 BLE3 inflorescence branching TO:0000050 PMID:16808934 IMP T Os05g0245300 less branching gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0080018 BLE3 plant height TO:0000207 PMID:16808934 IMP T Os05g0245300 Semi-dwarf gene taxon:4530 20150417 Planteome:Ethan_Johnson -!GR_gene GR:0101269 COIN cold tolerance TO:0000303 PMID:17549515 IMP T Os01g0104100 tolerance to cold temperature gene taxon:4530 20150417 Planteome:Ethan_Johnson -!GR_gene GR:0101269 COIN salt tolerance TO:0006001 PMID:17549515 IMP T Os01g0104100 tolerance to salt gene taxon:4530 20150417 Planteome:Ethan_Johnson -!GR_gene GR:0101269 COIN drought tolerance TO:0000276 PMID:17549515 IMP T Os01g0104100 tolerance to drought-like conditions gene taxon:4530 20150417 Planteome:Ethan_Johnson -!GR_gene GR:0101269 COIN proline content TO:0006002 PMID:17549515 IMP T Os01g0104100 increase in cellular proline content gene taxon:4530 20150417 Planteome:Ethan_Johnson -GR_gene GR:0020064 CPS1 plant height TO:0000207 PMID:16861806 IMP T Os02g0278700 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0020065 CPS2 plant height TO:0000207 PMID:16861806 IMP T Os02g0571100 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0020066 CPS4 plant height TO:0000207 PMID:16861806 IMP T Os04g0178300 dwarfism gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0080030 CPT1 shoot phototropism TO:0002651 PMID:15598797 IMP T Os02g0568200 complete loss of coleoptile phototropism gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0080030 CPT1 root phototropism TO:0002652 PMID:15598797 IMP T Os02g0568200 Reduced root phototropism gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 grain size TO:0000397 PMID:12237405 IMP T Os05g0333200 small grain gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 plant height TO:0000207 PMID:12237405 IMP T Os05g0333200 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 stem length TO:0000576 PMID:12237405 IMP T Os05g0333200 short stems gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 leaf height TO:0000541 PMID:12237405 IMP T Os05g0333200 short leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 leaf size TO:0002637 PMID:12237405 IMP T Os05g0333200 broad leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 leaf color TO:0000326 PMID:12237405 IMP T Os05g0333200 dark green leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 panicle axis angle TO:0000342 PMID:12237405 IMP T Os05g0333200 erect paincles gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 panicle compactness and shape TO:0020001 PMID:12237405 IMP T Os05g0333200 compact panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 glume width TO:0020034 PMID:12237405 IMP T Os05g0333200 small glume gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 glume anatomy and morphology trait TO:0000869 PMID:12237405 IMP T Os05g0333200 round glumes gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060184 D1 basal internode diameter TO:0000132 PMID:12237405 IMP T Os05g0333200 thick internodes gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060192 D10 plant height TO:0000207 GR_REF:5792 IMP T Os01g0746400 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060192 D10 tiller number TO:0000346 GR_REF:5792 IMP T Os01g0746400 profuse tillers gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0080018 BLE3 TO:0000227 PMID:16808934 IMP T Os05g0245300 short roots gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0080018 BLE3 TO:0000050 PMID:16808934 IMP T Os05g0245300 less branching gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0080018 BLE3 TO:0000207 PMID:16808934 IMP T Os05g0245300 Semi-dwarf gene taxon:4530 20150417 Planteome:Ethan_Johnson +!GR_gene GR:0101269 COIN TO:0000303 PMID:17549515 IMP T Os01g0104100 tolerance to cold temperature gene taxon:4530 20150417 Planteome:Ethan_Johnson +!GR_gene GR:0101269 COIN TO:0006001 PMID:17549515 IMP T Os01g0104100 tolerance to salt gene taxon:4530 20150417 Planteome:Ethan_Johnson +!GR_gene GR:0101269 COIN TO:0000276 PMID:17549515 IMP T Os01g0104100 tolerance to drought-like conditions gene taxon:4530 20150417 Planteome:Ethan_Johnson +!GR_gene GR:0101269 COIN TO:0006002 PMID:17549515 IMP T Os01g0104100 increase in cellular proline content gene taxon:4530 20150417 Planteome:Ethan_Johnson +GR_gene GR:0020064 CPS1 TO:0000207 PMID:16861806 IMP T Os02g0278700 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0020065 CPS2 TO:0000207 PMID:16861806 IMP T Os02g0571100 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0020066 CPS4 TO:0000207 PMID:16861806 IMP T Os04g0178300 dwarfism gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0080030 CPT1 TO:0002651 PMID:15598797 IMP T Os02g0568200 complete loss of coleoptile phototropism gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0080030 CPT1 TO:0002652 PMID:15598797 IMP T Os02g0568200 Reduced root phototropism gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000397 PMID:12237405 IMP T Os05g0333200 small grain gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000207 PMID:12237405 IMP T Os05g0333200 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000576 PMID:12237405 IMP T Os05g0333200 short stems gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000541 PMID:12237405 IMP T Os05g0333200 short leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0002637 PMID:12237405 IMP T Os05g0333200 broad leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000326 PMID:12237405 IMP T Os05g0333200 dark green leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000342 PMID:12237405 IMP T Os05g0333200 erect paincles gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0020001 PMID:12237405 IMP T Os05g0333200 compact panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0020034 PMID:12237405 IMP T Os05g0333200 small glume gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000869 PMID:12237405 IMP T Os05g0333200 round glumes gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060184 D1 TO:0000132 PMID:12237405 IMP T Os05g0333200 thick internodes gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060192 D10 TO:0000207 GR_REF:5792 IMP T Os01g0746400 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060192 D10 TO:0000346 GR_REF:5792 IMP T Os01g0746400 profuse tillers gene taxon:4530 20150420 Planteome:Ethan_Johnson !GR_gene GR:0060192 D10 GR_REF:5792 IMP Os01g0746400 slender tillers gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060192 D10 panicle size TO:0006032 GR_REF:5792 IMP T Os01g0746400 small panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 plant height TO:0000207 PMID:15705958 IMP T Os04g0469800 semidwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 stem internode anatomy and morphology trait TO:0000756 PMID:15705958 IMP T Os04g0469800 second internode reduced gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 panicle length TO:0000040 PMID:15705958 IMP T Os04g0469800 long panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 grain number per plant TO:0000440 PMID:15705958 IMP T Os04g0469800 sparse grain set gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 grain shape TO:0002730 PMID:15705958 IMP T Os04g0469800 round grains gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060193 D11 grain size TO:0000397 PMID:15705958 IMP T Os04g0469800 small grains gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060186 D3 plant height TO:0000207 PMID:15659436 IMP T Os06g0154200 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060186 D3 space per culm TO:0000560 PMID:15659436 IMP T Os06g0154200 Many fine tillers gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060186 D3 leaf size TO:0002637 PMID:15659436 IMP T Os06g0154200 slender leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060213 D35 plant height TO:0000207 PMID:15075394 IMP T Os06g0569500 Semi-dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060192 D10 TO:0006032 GR_REF:5792 IMP T Os01g0746400 small panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0000207 PMID:15705958 IMP T Os04g0469800 semidwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0000756 PMID:15705958 IMP T Os04g0469800 second internode reduced gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0000040 PMID:15705958 IMP T Os04g0469800 long panicles gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0000440 PMID:15705958 IMP T Os04g0469800 sparse grain set gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0002730 PMID:15705958 IMP T Os04g0469800 round grains gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060193 D11 TO:0000397 PMID:15705958 IMP T Os04g0469800 small grains gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060186 D3 TO:0000207 PMID:15659436 IMP T Os06g0154200 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060186 D3 TO:0000560 PMID:15659436 IMP T Os06g0154200 Many fine tillers gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060186 D3 TO:0002637 PMID:15659436 IMP T Os06g0154200 slender leaves gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0060213 D35 TO:0000207 PMID:15075394 IMP T Os06g0569500 Semi-dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson !GR_gene GR:0060213 D35 PMID:15075394 IMP Os06g0569500 Gibberellin biosynthesis defective gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0060226 D61 plant height TO:0000207 PMID:11006334 IMP T Os01g0718300 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 plant height TO:0000207 PMID:16126864 IMP T Os03g0121901 dwarfism gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 leaf color TO:0000326 PMID:16126864 IMP T Os03g0121901 dark green leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 rolled leaf TO:0006064 PMID:16126864 IMP T Os03g0121901 rolled leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 shoot system anatomy and morphology trait TO:0000077 PMID:16126864 IMP T Os03g0121901 twisted shoot gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 root development trait TO:0000656 PMID:16126864 IMP T Os03g0121901 abnormal root development gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 adventitious root number TO:0001006 PMID:16126864 IMP T Os03g0121901 few adventitious roots gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0101251 DCL1 chloroplast development trait TO:0002715 PMID:16126864 IMP T Os03g0121901 ectopic chloroplast development in adventitious roots gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0060226 D61 TO:0000207 PMID:11006334 IMP T Os01g0718300 dwarf gene taxon:4530 20150420 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0000207 PMID:16126864 IMP T Os03g0121901 dwarfism gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0000326 PMID:16126864 IMP T Os03g0121901 dark green leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0006064 PMID:16126864 IMP T Os03g0121901 rolled leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0000077 PMID:16126864 IMP T Os03g0121901 twisted shoot gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0000656 PMID:16126864 IMP T Os03g0121901 abnormal root development gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0001006 PMID:16126864 IMP T Os03g0121901 few adventitious roots gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0101251 DCL1 TO:0002715 PMID:16126864 IMP T Os03g0121901 ectopic chloroplast development in adventitious roots gene taxon:4530 20150422 Planteome:Ethan_Johnson !GR_gene GR:0101251 DCL1 PMID:16126864 IMP Os03g0121901 miRNA accumulation in leaves absent gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0060233 DL leaf attitude TO:0000824 PMID:14729915 IMP T Os03g0215200 drooping leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0060233 DL leaf midvein anatomy and morphology trait TO:0000822 PMID:14729915 IMP T Os03g0215200 loss of midrib formation gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0060233 DL TO:0000824 PMID:14729915 IMP T Os03g0215200 drooping leaves gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0060233 DL TO:0000822 PMID:14729915 IMP T Os03g0215200 loss of midrib formation gene taxon:4530 20150422 Planteome:Ethan_Johnson !GR_gene GR:0060233 DL PMID:14729915 IMP Os03g0215200 abnormal carpel development gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080029 DOS leaf senescence TO:0000249 PMID:16778011 IMP T Os01g0192000 delayed leaf senescence gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 germination rate TO:0000430 IMP T Os09g0434200 delayed germination gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 plant height TO:0000207 IMP T Os09g0434200 dwarf gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 stress trait TO:0000164 IMP T Os09g0434200 tolerant to high salt stress gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 stress trait TO:0000164 IMP T Os09g0434200 tolerant to high drought stress gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 coleoptile anatomy and morphology trait TO:0000753 IMP T Os09g0434200 abnormal growth of coleoptile gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 shoot internode anatomy and morphology trait TO:0000755 IMP T Os09g0434200 internodes may display two or more shoot apices gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 stem internode anatomy and morphology trait TO:0000756 IMP T Os09g0434200 internodes may display two or more roots gene taxon:4530 20150422 Planteome:Ethan_Johnson -!GR_gene GR:0000000 DSG1 plant phenological trait TO:0000933 IMP T Os09g0434200 bushy plant gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF stem elongation TO:0006036 PMID:12445121 IMP T Os03g0602300 defects in stem elongation gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF leaf elongation rate TO:0000360 PMID:12445121 IMP T Os03g0602300 defects in leaf elongation gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF cell growth and development trait TO:0002686 PMID:12445121 IMP T Os03g0602300 failure in organization of cells in stem gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF cell growth and development trait TO:0002686 PMID:12445121 IMP T Os03g0602300 failure in organization of cells in leaf gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF cell elongation trait TO:0002687 PMID:12445121 IMP T Os03g0602300 failure in polar elongation of cells in stem gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080017 DWARF cell elongation trait TO:0002687 PMID:12445121 IMP T Os03g0602300 failure in polar elongation of cells in leaf gene taxon:4530 20150422 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 plant height TO:0000207 PMID:16369540 IMP T Os03g0227700 slight dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 leaf erect TO:0000872 PMID:16369540 IMP T Os03g0227700 erect leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 grain yield trait TO:0000396 PMID:16369540 IMP T Os03g0227700 enhanced grain yield gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 panicle number TO:0000152 PMID:16369540 IMP T Os03g0227700 increased panicle number gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 plant height TO:0000207 PMID:16369540 IMP T Os03g0227700 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 leaf shape TO:0000492 PMID:16369540 IMP T Os03g0227700 malformed leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080016 DWARF4 leaf lamina anatomy and morphology trait TO:0000829 PMID:16369540 IMP T Os03g0227700 tortuous leaf blades gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060320 EUI1 internode length TO:0000145 PMID:16399803 IMP T Os05g0482400 internode doubles in length gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060320 EUI1 panicle length TO:0000040 PMID:16399803 IMP T Os05g0482400 panicle length increase gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060333 FON1 floral organ number TO:0006038 PMID:16511358 IMP T Os06g0717200 increased floral organ number gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060333 FON1 plant structure growth and development trait TO:0000928 PMID:16511358 IMP T Os06g0717200 enlarged floral meristem gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080005 FOR1 floral organ number TO:0006038 PMID:16511358 IMP T Os07g0568700 extra floral organs in spikelet gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060339 FZP floral organ development trait TO:0006022 PMID:12835399 IMP T Os07g0669500 do not form floret gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060339 FZP shoot branching TO:0002639 PMID:12835399 IMP T Os07g0669500 produce sequential rounds of branching gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060339 FZP glume number TO:0006029 PMID:12835399 IMP T Os07g0669500 produce several rudimentary glumes per branch gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060366 GH2 lemma and palea color TO:0000264 PMID:16443696 IMP T Os02g0187800 brownish green lemma at panicle exsertion gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060366 GH2 lemma and palea color TO:0000264 PMID:16443696 IMP T Os02g0187800 brownish green palea at panicle exsertion gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060366 GH2 hull color TO:0000706 PMID:16443696 IMP T Os02g0187800 golden hull at maturity gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060366 GH2 internode color TO:0000426 PMID:16443696 IMP T Os02g0187800 golden internode has intensified color gene taxon:4530 20150424 Planteome:Ethan_Johnson -!GR_gene GR:0000000 Gi photoperiod-sensitive flowering time trait TO:0000934 IMP Os01g0182600 suppressor of flowering under long-day photoperiodism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080024 GID2 plant height TO:0000207 PMID:12649483 IMP T Os02g0580300 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080024 GID2 leaf lamina width TO:0002720 PMID:12649483 IMP T Os02g0580300 wide leaf blades gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080024 GID2 leaf color TO:0000326 PMID:12649483 IMP T Os02g0580300 dark green leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080024 GID2 sterility related trait TO:0000485 PMID:12649483 IMP T Os02g0580300 mutant is sterile gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080062 GIF1 fruit ripening trait TO:0002633 PMID:18820698 IMP T Os04g0413500 slow grain filling gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080062 GIF1 chalky endosperm TO:0000266 PMID:18820698 IMP T Os04g0413500 increased grain chalkiness gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080062 GIF1 dehulled grain weight TO:0000590 PMID:18820698 IMP T Os04g0413500 reduced grain weight gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080062 GIF1 starch grain shape TO:0002656 PMID:18820698 IMP T Os04g0413500 abnormal starch granules gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 plant height TO:0000207 PMID:17092317 IMP T Os04g0550600 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 plant phenological trait TO:0000933 PMID:17092317 IMP T Os04g0550600 bushy gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 tillering ability TO:0000329 PMID:17092317 IMP T Os04g0550600 High tillering due to high release of axillary buds gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 auxin sensitivity TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of IAA gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 auxin sensitivity TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of ABA gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080027 HTD1 auxin sensitivity TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of GA gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020067 KS1 plant height TO:0000207 PMID:17141283 IMP T Os04g0611800 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020068 KS2 plant height TO:0000207 PMID:17141283 IMP T Os04g0612000 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020070 KS4 plant height TO:0000207 PMID:17141283 IMP T Os04g0179700 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020071 KS5 plant height TO:0000207 PMID:17141283 IMP T Os02g0571300 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020072 KS6 plant height TO:0000207 PMID:17141283 IMP T Os02g0571800 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0020073 KS7 plant height TO:0000207 PMID:17141283 IMP T Os02g0570400 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060493 LAX relative spikelet number TO:0001033 PMID:7896104 IMP T Os01g0831000 sparse setting of spikelets gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060493 LAX spikelet anatomy and morphology trait TO:0000657 PMID:7896104 IMP T Os01g0831000 deformed spikelets at low temperatures gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0060493 LAX temperature response trait TO:0000432 PMID:7896104 IMP T Os01g0831000 absence of spikelet at low temperature gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080029 DOS TO:0000249 PMID:16778011 IMP T Os01g0192000 delayed leaf senescence gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000430 IMP T Os09g0434200 delayed germination gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000207 IMP T Os09g0434200 dwarf gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000164 IMP T Os09g0434200 tolerant to high salt stress gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000164 IMP T Os09g0434200 tolerant to high drought stress gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000753 IMP T Os09g0434200 abnormal growth of coleoptile gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000755 IMP T Os09g0434200 internodes may display two or more shoot apices gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000756 IMP T Os09g0434200 internodes may display two or more roots gene taxon:4530 20150422 Planteome:Ethan_Johnson +!GR_gene GR:0000000 DSG1 TO:0000933 IMP T Os09g0434200 bushy plant gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0006036 PMID:12445121 IMP T Os03g0602300 defects in stem elongation gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0000360 PMID:12445121 IMP T Os03g0602300 defects in leaf elongation gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0002686 PMID:12445121 IMP T Os03g0602300 failure in organization of cells in stem gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0002686 PMID:12445121 IMP T Os03g0602300 failure in organization of cells in leaf gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0002687 PMID:12445121 IMP T Os03g0602300 failure in polar elongation of cells in stem gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080017 DWARF TO:0002687 PMID:12445121 IMP T Os03g0602300 failure in polar elongation of cells in leaf gene taxon:4530 20150422 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000207 PMID:16369540 IMP T Os03g0227700 slight dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000872 PMID:16369540 IMP T Os03g0227700 erect leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000396 PMID:16369540 IMP T Os03g0227700 enhanced grain yield gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000152 PMID:16369540 IMP T Os03g0227700 increased panicle number gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000207 PMID:16369540 IMP T Os03g0227700 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000492 PMID:16369540 IMP T Os03g0227700 malformed leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080016 DWARF4 TO:0000829 PMID:16369540 IMP T Os03g0227700 tortuous leaf blades gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060320 EUI1 TO:0000145 PMID:16399803 IMP T Os05g0482400 internode doubles in length gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060320 EUI1 TO:0000040 PMID:16399803 IMP T Os05g0482400 panicle length increase gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060333 FON1 TO:0006038 PMID:16511358 IMP T Os06g0717200 increased floral organ number gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060333 FON1 TO:0000928 PMID:16511358 IMP T Os06g0717200 enlarged floral meristem gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080005 FOR1 TO:0006038 PMID:16511358 IMP T Os07g0568700 extra floral organs in spikelet gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060339 FZP TO:0006022 PMID:12835399 IMP T Os07g0669500 do not form floret gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060339 FZP TO:0002639 PMID:12835399 IMP T Os07g0669500 produce sequential rounds of branching gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060339 FZP TO:0006029 PMID:12835399 IMP T Os07g0669500 produce several rudimentary glumes per branch gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060366 GH2 TO:0000264 PMID:16443696 IMP T Os02g0187800 brownish green lemma at panicle exsertion gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060366 GH2 TO:0000264 PMID:16443696 IMP T Os02g0187800 brownish green palea at panicle exsertion gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060366 GH2 TO:0000706 PMID:16443696 IMP T Os02g0187800 golden hull at maturity gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060366 GH2 TO:0000426 PMID:16443696 IMP T Os02g0187800 golden internode has intensified color gene taxon:4530 20150424 Planteome:Ethan_Johnson +!GR_gene GR:0000000 Gi TO:0000934 IMP Os01g0182600 suppressor of flowering under long-day photoperiodism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080024 GID2 TO:0000207 PMID:12649483 IMP T Os02g0580300 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080024 GID2 TO:0002720 PMID:12649483 IMP T Os02g0580300 wide leaf blades gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080024 GID2 TO:0000326 PMID:12649483 IMP T Os02g0580300 dark green leaves gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080024 GID2 TO:0000485 PMID:12649483 IMP T Os02g0580300 mutant is sterile gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080062 GIF1 TO:0002633 PMID:18820698 IMP T Os04g0413500 slow grain filling gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080062 GIF1 TO:0000266 PMID:18820698 IMP T Os04g0413500 increased grain chalkiness gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080062 GIF1 TO:0000590 PMID:18820698 IMP T Os04g0413500 reduced grain weight gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080062 GIF1 TO:0002656 PMID:18820698 IMP T Os04g0413500 abnormal starch granules gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000207 PMID:17092317 IMP T Os04g0550600 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000933 PMID:17092317 IMP T Os04g0550600 bushy gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000329 PMID:17092317 IMP T Os04g0550600 High tillering due to high release of axillary buds gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of IAA gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of ABA gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080027 HTD1 TO:0000163 PMID:17092317 IMP T Os04g0550600 independent of GA gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020067 KS1 TO:0000207 PMID:17141283 IMP T Os04g0611800 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020068 KS2 TO:0000207 PMID:17141283 IMP T Os04g0612000 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020070 KS4 TO:0000207 PMID:17141283 IMP T Os04g0179700 dwarfism gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020071 KS5 TO:0000207 PMID:17141283 IMP T Os02g0571300 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020072 KS6 TO:0000207 PMID:17141283 IMP T Os02g0571800 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0020073 KS7 TO:0000207 PMID:17141283 IMP T Os02g0570400 dwarf gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060493 LAX TO:0001033 PMID:7896104 IMP T Os01g0831000 sparse setting of spikelets gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060493 LAX TO:0000657 PMID:7896104 IMP T Os01g0831000 deformed spikelets at low temperatures gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0060493 LAX TO:0000432 PMID:7896104 IMP T Os01g0831000 absence of spikelet at low temperature gene taxon:4530 20150424 Planteome:Ethan_Johnson !GR_gene GR:0101253 Log PMID:17287810 IMP Os01g0588900 reduced number of active meristematic cells in shoot apical meristem gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0101253 Log inflorescence development trait TO:0000621 PMID:17287810 IMP T Os01g0588900 arrest of inflorescence lateral meristem development gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0101253 Log primary branch number TO:0000547 PMID:17287810 IMP T Os01g0588900 few inflorescence branches gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0101253 Log panicle size TO:0006032 PMID:17287810 IMP T Os01g0588900 small panicles gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0101253 Log meristem identity TO:0006017 PMID:17287810 IMP T Os01g0588900 floral meristem flattens gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0101253 Log pistil number TO:0002659 PMID:17287810 IMP T Os01g0588900 flower lacks pistil gene taxon:4530 20150424 Planteome:Ethan_Johnson -!GR_gene GR:0101253 Log PMID:17287810 IMP Os01g0588900 Defective in the cytokinin activation pathways leading to the active free base form gene taxon:4530 20150424 Planteome:Ethan_Johnson -GR_gene GR:0080009 LSI1 grain yield trait TO:0000396 PMID:16572174 IMP T Os02g0745100 grain yield is reduced gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0101253 Log TO:0000621 PMID:17287810 IMP T Os01g0588900 arrest of inflorescence lateral meristem development gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0101253 Log TO:0000547 PMID:17287810 IMP T Os01g0588900 few inflorescence branches gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0101253 Log TO:0006032 PMID:17287810 IMP T Os01g0588900 small panicles gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0101253 Log TO:0006017 PMID:17287810 IMP T Os01g0588900 floral meristem flattens gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0101253 Log TO:0002659 PMID:17287810 IMP T Os01g0588900 flower lacks pistil gene taxon:4530 20150424 Planteome:Ethan_Johnson +!GR_gene GR:0101253 Log PMID:17287810 IMP Os01g0588900 Defective in the cytokinin activation pathways leading to the active free base form gene taxon:4530 20150424 Planteome:Ethan_Johnson +GR_gene GR:0080009 LSI1 TO:0000396 PMID:16572174 IMP T Os02g0745100 grain yield is reduced gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0080009 LSI1 PMID:16572174 IMP Os02g0745100 reduced silicon uptake gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080009 LSI1 animal damage resistance TO:0000054 PMID:16572174 IMP T Os02g0745100 susceptible to pests gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080009 LSI1 disease resistance TO:0000112 PMID:16572174 IMP T Os02g0745100 susceptible to disease gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080037 LSI2 growth and development trait TO:0000357 PMID:17625566 IMP T Os03g0107300 reduced growth gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080037 LSI2 pericarp color TO:0000707 PMID:17625566 IMP T Os03g0107300 grain discoloration gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080009 LSI1 TO:0000054 PMID:16572174 IMP T Os02g0745100 susceptible to pests gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080009 LSI1 TO:0000112 PMID:16572174 IMP T Os02g0745100 susceptible to disease gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080037 LSI2 TO:0000357 PMID:17625566 IMP T Os03g0107300 reduced growth gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080037 LSI2 TO:0000707 PMID:17625566 IMP T Os03g0107300 grain discoloration gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0080037 LSI2 PMID:17625566 IMP Os03g0107300 low silicon in shoot gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0080037 LSI2 PMID:17625566 IMP Os03g0107300 low silicon in hull gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080015 MADS1 lemma morphology trait TO:1000023 PMID:16146529 IMP T Os03g0215400 leafy lemma gene taxon:4530 20150427 Planteome:Laurel_Cooper -GR_gene GR:0080015 MADS1 palea morphology trait TO:1000024 PMID:16146529 IMP T Os03g0215400 leafy palea gene taxon:4530 20150427 Planteome:Laurel_Cooper +GR_gene GR:0080015 MADS1 TO:1000023 PMID:16146529 IMP T Os03g0215400 leafy lemma gene taxon:4530 20150427 Planteome:Laurel_Cooper +GR_gene GR:0080015 MADS1 TO:1000024 PMID:16146529 IMP T Os03g0215400 leafy palea gene taxon:4530 20150427 Planteome:Laurel_Cooper !GR_gene GR:0080015 MADS1 PMID:16146529 IMP Os03g0215400 open hull gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080015 MADS1 stamen number TO:0000225 PMID:16146529 IMP T Os03g0215400 reduced stamen number gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080015 MADS1 carpel number TO:0006013 PMID:16146529 IMP T Os03g0215400 increased carpel number gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080041 MADS13 female sterility TO:0000358 PMID:10528264 IMP T Os12g0207000 female sterile gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080041 MADS13 reproductive homeotic development trait TO:0002613 PMID:10528264 IMP T Os12g0207000 ovules converted to carpels gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080041 MADS13 flower development trait TO:0000622 PMID:10528264 IMP T Os12g0207000 indeterminate flower growth gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080015 MADS1 TO:0000225 PMID:16146529 IMP T Os03g0215400 reduced stamen number gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080015 MADS1 TO:0006013 PMID:16146529 IMP T Os03g0215400 increased carpel number gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080041 MADS13 TO:0000358 PMID:10528264 IMP T Os12g0207000 female sterile gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080041 MADS13 TO:0002613 PMID:10528264 IMP T Os12g0207000 ovules converted to carpels gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080041 MADS13 TO:0000622 PMID:10528264 IMP T Os12g0207000 indeterminate flower growth gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0080041 MADS13 PMID:10528264 IMP Os12g0207000 extra stigmas protruding from carpels gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080025 MADS18 flowering time trait TO:0002616 PMID:15299121 IMP T Os07g0605200 early flowering gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080025 MADS18 plant height TO:0000207 PMID:15299121 IMP T Os07g0605200 dwarfism gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080025 MADS18 shoot elongation rate TO:0000368 PMID:15299121 IMP T Os07g0605200 low rate of internonde elongation gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080025 MADS18 leaf sheath length TO:0002689 PMID:15299121 IMP T Os07g0605200 reduction of length of leaf sheath gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080021 MADS22 floral organ development trait TO:0006022 PMID:15682279 IMP T Os02g0761000 aberrant floral morphogenesis gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080021 MADS22 bract anatomy and morphology trait TO:0000815 PMID:15682279 IMP T Os02g0761000 disorganized palea gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080021 MADS22 glume length TO:0020033 PMID:15682279 IMP T Os02g0761000 elongated glume gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080021 MADS22 floret number per spikelet TO:0006033 PMID:15682279 IMP T Os02g0761000 Two-floret spikelet gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MDP1 seminal root length TO:0000586 PMID:16827922 IMP T Os03g0186600 shortened primary roots gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MDP1 coleoptile length TO:0001007 PMID:16827922 IMP T Os03g0186600 elongated coleoptiles gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MDP1 leaf lamina joint bending TO:0002688 PMID:16827922 IMP T Os03g0186600 enhanced lamina joint inclinations gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MEL1 meiotic cell cycle trait TO:0000729 PMID:17675402 IMP T Os03g0800200 chromosome condensation arrested in early meiotic stage gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MEL1 plant cell anatomy and morphology trait TO:0002683 PMID:17675402 IMP T Os03g0800200 irregularly sized pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MEL1 plant cell anatomy and morphology trait TO:0002683 PMID:17675402 IMP T Os03g0800200 multinucleated pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080019 MEL1 plant cell anatomy and morphology trait TO:0002683 PMID:17675402 IMP T Os03g0800200 vacuolated pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080008 MOC1 tillering ability TO:0000329 PMID:12687001 IMP T Os06g0610300 Complete loss of tiller formation gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0061178 MSP1 microsporocyte number TO:0000726 PMID:12897248 IMP T Os01g0917500 excessive number of sporocytes gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080025 MADS18 TO:0002616 PMID:15299121 IMP T Os07g0605200 early flowering gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080025 MADS18 TO:0000207 PMID:15299121 IMP T Os07g0605200 dwarfism gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080025 MADS18 TO:0000368 PMID:15299121 IMP T Os07g0605200 low rate of internonde elongation gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080025 MADS18 TO:0002689 PMID:15299121 IMP T Os07g0605200 reduction of length of leaf sheath gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080021 MADS22 TO:0006022 PMID:15682279 IMP T Os02g0761000 aberrant floral morphogenesis gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080021 MADS22 TO:0000815 PMID:15682279 IMP T Os02g0761000 disorganized palea gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080021 MADS22 TO:0020033 PMID:15682279 IMP T Os02g0761000 elongated glume gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080021 MADS22 TO:0006033 PMID:15682279 IMP T Os02g0761000 Two-floret spikelet gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MDP1 TO:0000586 PMID:16827922 IMP T Os03g0186600 shortened primary roots gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MDP1 TO:0001007 PMID:16827922 IMP T Os03g0186600 elongated coleoptiles gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MDP1 TO:0002688 PMID:16827922 IMP T Os03g0186600 enhanced lamina joint inclinations gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MEL1 TO:0000729 PMID:17675402 IMP T Os03g0800200 chromosome condensation arrested in early meiotic stage gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MEL1 TO:0002683 PMID:17675402 IMP T Os03g0800200 irregularly sized pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MEL1 TO:0002683 PMID:17675402 IMP T Os03g0800200 multinucleated pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080019 MEL1 TO:0002683 PMID:17675402 IMP T Os03g0800200 vacuolated pollen mother cell in anther gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080008 MOC1 TO:0000329 PMID:12687001 IMP T Os06g0610300 Complete loss of tiller formation gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0061178 MSP1 TO:0000726 PMID:12897248 IMP T Os01g0917500 excessive number of sporocytes gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0061178 MSP1 PMID:12897248 IMP Os01g0917500 disordered anther walls gene taxon:4530 20150427 Planteome:Ethan_Johnson !GR_gene GR:0061178 MSP1 PMID:12897248 IMP Os01g0917500 loss of tapetum layer gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0061178 MSP1 cell growth and development trait TO:0002686 PMID:12897248 IMP T Os01g0917500 arrest of pollen mother cell development gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0061178 MSP1 male sterility TO:0000437 PMID:12897248 IMP T Os01g0917500 male sterile gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0080011 OSNOP pollen free TO:0000245 PMID:15952069 IMP T Os06g0607900 Pollen-less at flowering stage gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes become entangled during prophase 1 gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes compact adhered to a nucleolus gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes form sphere adhered to a nucleolus gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 homologous pairing failed to occur gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 male sterility TO:0000437 PMID:15031413 IMP T Os03g0106300 complete sterility of male gametes gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 female sterility TO:0000358 PMID:15031413 IMP T Os03g0106300 complete sterility of female gametes gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 at anaphase I uneven spore production gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100119 PAIR1 meiotic cell cycle trait TO:0000729 PMID:15031413 IMP T Os03g0106300 at telophase 1 uneven spore production gene taxon:4530 20150427 Planteome:Ethan_Johnson -GR_gene GR:0100120 PAIR2 sterility or fertility trait TO:0000392 PMID:14758540 IMP T Os09g0506800 sterile gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100120 PAIR2 meiotic cell cycle trait TO:0000729 PMID:14758540 IMP T Os09g0506800 Loss of homologous chromosome pairing gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PLA1 basic vegetative phase TO:0000461 PMID: 25243048 IMP T Os10g0403000 leaves differentiate faster in vegetative phase gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PLA1 panicle number TO:0000152 PMID: 25243048 IMP T Os10g0403000 panicle development disturbed gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PLA1 shoot apical meristem development TO:0006020 PMID: 25243048 IMP T Os10g0403000 larger shoot apical meristem gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 plastochron TO:0000735 PMID:16461585 IMP T Os01g0907900 shortened plastochron gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 plant height TO:0000207 PMID:16461585 IMP T Os01g0907900 dwarfism gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 leaf size TO:0002637 PMID:16461585 IMP T Os01g0907900 reduction of leaf size gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 tiller number TO:0000346 PMID:16461585 IMP T Os01g0907900 reduction of tiller number gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 leaf growth and development trait TO:0000655 PMID:16461585 IMP T Os01g0907900 acceleration of leaf maturation gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061182 PLA2 shoot system growth and development trait TO:0000654 PMID:16461585 IMP T Os01g0907900 ectopic shoot formation gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080013 PNH1 leaf growth and development trait TO:0000655 PMID:12000455 IMP T Os06g0597400 malformed leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080013 PNH1 vascular leaf anatomy and morphology trait TO:0000419 PMID:12000455 IMP T Os06g0597400 altered vascular arrangement gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080013 PNH1 plant structure anatomy and morphology trait TO:0000839 PMID:12000455 IMP T Os06g0597400 abnormal internal structure gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080061 PROG1 growth and development trait TO:0000357 PMID:18820699 IMP T Os07g0153600 erect growth gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080061 PROG1 grain number TO:0002759 PMID:18820699 IMP T Os07g0153600 greater grain number gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PSD relative growth rate TO:0000515 PMID: 18850055 IMP T Os07g0613300 slow growth gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PSD inflorescence development trait TO:0000621 PMID: 18850055 IMP T Os07g0613300 delayed panicle heading gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 PSD fertility related trait TO:0000420 PMID: 18850055 IMP T Os07g0613300 reduced fertility gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0101187 PSS1 sterility or fertility trait TO:0000392 PMID:17279367 IMP T Os08g0117000 pollen semi-sterility gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061178 MSP1 TO:0002686 PMID:12897248 IMP T Os01g0917500 arrest of pollen mother cell development gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0061178 MSP1 TO:0000437 PMID:12897248 IMP T Os01g0917500 male sterile gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0080011 OSNOP TO:0000245 PMID:15952069 IMP T Os06g0607900 Pollen-less at flowering stage gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes become entangled during prophase 1 gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes compact adhered to a nucleolus gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 chromosomes form sphere adhered to a nucleolus gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 homologous pairing failed to occur gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000437 PMID:15031413 IMP T Os03g0106300 complete sterility of male gametes gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000358 PMID:15031413 IMP T Os03g0106300 complete sterility of female gametes gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 at anaphase I uneven spore production gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100119 PAIR1 TO:0000729 PMID:15031413 IMP T Os03g0106300 at telophase 1 uneven spore production gene taxon:4530 20150427 Planteome:Ethan_Johnson +GR_gene GR:0100120 PAIR2 TO:0000392 PMID:14758540 IMP T Os09g0506800 sterile gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100120 PAIR2 TO:0000729 PMID:14758540 IMP T Os09g0506800 Loss of homologous chromosome pairing gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PLA1 TO:0000461 PMID: 25243048 IMP T Os10g0403000 leaves differentiate faster in vegetative phase gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PLA1 TO:0000152 PMID: 25243048 IMP T Os10g0403000 panicle development disturbed gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PLA1 TO:0006020 PMID: 25243048 IMP T Os10g0403000 larger shoot apical meristem gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0000735 PMID:16461585 IMP T Os01g0907900 shortened plastochron gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0000207 PMID:16461585 IMP T Os01g0907900 dwarfism gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0002637 PMID:16461585 IMP T Os01g0907900 reduction of leaf size gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0000346 PMID:16461585 IMP T Os01g0907900 reduction of tiller number gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0000655 PMID:16461585 IMP T Os01g0907900 acceleration of leaf maturation gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061182 PLA2 TO:0000654 PMID:16461585 IMP T Os01g0907900 ectopic shoot formation gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080013 PNH1 TO:0000655 PMID:12000455 IMP T Os06g0597400 malformed leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080013 PNH1 TO:0000419 PMID:12000455 IMP T Os06g0597400 altered vascular arrangement gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080013 PNH1 TO:0000839 PMID:12000455 IMP T Os06g0597400 abnormal internal structure gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080061 PROG1 TO:0000357 PMID:18820699 IMP T Os07g0153600 erect growth gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080061 PROG1 TO:0002759 PMID:18820699 IMP T Os07g0153600 greater grain number gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PSD TO:0000515 PMID: 18850055 IMP T Os07g0613300 slow growth gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PSD TO:0000621 PMID: 18850055 IMP T Os07g0613300 delayed panicle heading gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 PSD TO:0000420 PMID: 18850055 IMP T Os07g0613300 reduced fertility gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0101187 PSS1 TO:0000392 PMID:17279367 IMP T Os08g0117000 pollen semi-sterility gene taxon:4530 20150429 Planteome:Ethan_Johnson !GR_gene GR:0101187 PSS1 PMID:17279367 IMP Os08g0117000 anther indehiscence unaffected by growth duration gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0101187 PSS1 meiotic cell cycle trait TO:0000729 PMID:17279367 IMP T Os08g0117000 female gamete normal gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 days to heading TO:0000137 PMID:12148532 IMP T Os11g0152500 delayed heading gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 leaf number TO:0000241 PMID:12148532 IMP T Os11g0152500 increased leaf number in short-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 leaf number TO:0000241 PMID:12148532 IMP T Os11g0152500 increased leaf number in long-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 inflorescence anatomy and morphology trait TO:0000373 PMID:12148532 IMP T Os11g0152500 altered inflorescence morphology gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 primary branch number TO:0000547 PMID:12148532 IMP T Os11g0152500 increased number of primary branches in inflorescence gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 secondary branch number TO:0000557 PMID:12148532 IMP T Os11g0152500 increased number of secondary branches in inflorescence gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100117 RCN1 floret number TO:0000670 PMID:12148532 IMP T Os11g0152500 increased number of florets gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 days to heading TO:0000137 PMID:12148532 IMP T Os02g0531600 delay in heading gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 leaf number TO:0000241 PMID:12148532 IMP T Os02g0531600 increased number of leaves in short-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 leaf number TO:0000241 PMID:12148532 IMP T Os02g0531600 increased number of leaves in long-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 inflorescence anatomy and morphology trait TO:0000373 PMID:12148532 IMP T Os02g0531600 altered inflorescence morphology gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 primary branch number TO:0000547 PMID:12148532 IMP T Os02g0531600 increased number of primary branches gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 secondary branch number TO:0000557 PMID:12148532 IMP T Os02g0531600 increased number of secondary branches gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0100118 RCN2 floret number TO:0000670 PMID:12148532 IMP T Os02g0531600 increased number of florets gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080028 REH1 root development trait TO:0000656 PMID:16085936 IMP T Os02g0743400 Adventitious root development inhibited gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080028 REH1 tiller number TO:0000346 PMID:16085936 IMP T Os02g0743400 altered tiller number gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080028 REH1 root to shoot ratio TO:0000278 PMID:16085936 IMP T Os02g0743400 altered root to shoot ratio gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080028 REH1 root number TO:0000084 PMID:16085936 IMP T Os02g0743400 decrease advititious root number gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0080028 REH1 plant structure growth and development trait TO:0000928 PMID:16085936 IMP T Os02g0743400 arrest of primordia emergence gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060839 SBE3 amylose content TO:0000196 PMID:8360192 IMP T Os02g0528200 exceptionally high levels of amylose gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 SCR cell cycle trait TO:0000728 PMID: 26023934 IMP T Os12g0122000 asymmetric cell division gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060842 SD1 plant height TO:0000207 PMID:11961544 IMP T Os01g0883800 semi-dwarf gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060842 SD1 lodging incidence TO:0000068 PMID:11961544 IMP T Os01g0883800 resistant to lodging at high fertilizer level gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060842 SD1 yield trait TO:0000371 PMID:11961544 IMP T Os01g0883800 high yielding gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060842 SD1 cell cycle trait TO:0000728 PMID:11961544 IMP T Os01g0883800 inhibition of cell division during elongation of internode gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060842 SD1 enzyme activity trait TO:0000599 PMID:11961544 IMP T Os01g0883800 Defective in biosynthetic enzyme GA20ox-2 that catalyzed the conversion of GA53 to GA20 gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 SDR4 seed dormancy TO:0000253 PMID: 26205956 IMP T Os07g0585700 pronounced seed dormancy gene taxon:4530 20150429 Planteome:Ethan_Johnson -!GR_gene GR:0000000 SDR4 percent germination TO:0010001 PMID: 26205956 IMP T Os07g0585700 seeds unable to germinate under favorable conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060864 SE5 plant height TO:0000207 PMID:10849355 IMP T Os06g0603000 Semi-dwarf gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0101187 PSS1 TO:0000729 PMID:17279367 IMP T Os08g0117000 female gamete normal gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000137 PMID:12148532 IMP T Os11g0152500 delayed heading gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000241 PMID:12148532 IMP T Os11g0152500 increased leaf number in short-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000241 PMID:12148532 IMP T Os11g0152500 increased leaf number in long-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000373 PMID:12148532 IMP T Os11g0152500 altered inflorescence morphology gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000547 PMID:12148532 IMP T Os11g0152500 increased number of primary branches in inflorescence gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000557 PMID:12148532 IMP T Os11g0152500 increased number of secondary branches in inflorescence gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100117 RCN1 TO:0000670 PMID:12148532 IMP T Os11g0152500 increased number of florets gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000137 PMID:12148532 IMP T Os02g0531600 delay in heading gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000241 PMID:12148532 IMP T Os02g0531600 increased number of leaves in short-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000241 PMID:12148532 IMP T Os02g0531600 increased number of leaves in long-day conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000373 PMID:12148532 IMP T Os02g0531600 altered inflorescence morphology gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000547 PMID:12148532 IMP T Os02g0531600 increased number of primary branches gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000557 PMID:12148532 IMP T Os02g0531600 increased number of secondary branches gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0100118 RCN2 TO:0000670 PMID:12148532 IMP T Os02g0531600 increased number of florets gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080028 REH1 TO:0000656 PMID:16085936 IMP T Os02g0743400 Adventitious root development inhibited gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080028 REH1 TO:0000346 PMID:16085936 IMP T Os02g0743400 altered tiller number gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080028 REH1 TO:0000278 PMID:16085936 IMP T Os02g0743400 altered root to shoot ratio gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080028 REH1 TO:0000084 PMID:16085936 IMP T Os02g0743400 decrease advititious root number gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0080028 REH1 TO:0000928 PMID:16085936 IMP T Os02g0743400 arrest of primordia emergence gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060839 SBE3 TO:0000196 PMID:8360192 IMP T Os02g0528200 exceptionally high levels of amylose gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 SCR TO:0000728 PMID: 26023934 IMP T Os12g0122000 asymmetric cell division gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060842 SD1 TO:0000207 PMID:11961544 IMP T Os01g0883800 semi-dwarf gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060842 SD1 TO:0000068 PMID:11961544 IMP T Os01g0883800 resistant to lodging at high fertilizer level gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060842 SD1 TO:0000371 PMID:11961544 IMP T Os01g0883800 high yielding gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060842 SD1 TO:0000728 PMID:11961544 IMP T Os01g0883800 inhibition of cell division during elongation of internode gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060842 SD1 TO:0000599 PMID:11961544 IMP T Os01g0883800 Defective in biosynthetic enzyme GA20ox-2 that catalyzed the conversion of GA53 to GA20 gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 SDR4 TO:0000253 PMID: 26205956 IMP T Os07g0585700 pronounced seed dormancy gene taxon:4530 20150429 Planteome:Ethan_Johnson +!GR_gene GR:0000000 SDR4 TO:0010001 PMID: 26205956 IMP T Os07g0585700 seeds unable to germinate under favorable conditions gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060864 SE5 TO:0000207 PMID:10849355 IMP T Os06g0603000 Semi-dwarf gene taxon:4530 20150429 Planteome:Ethan_Johnson !GR_gene GR:0060864 SE5 PMID:10849355 IMP Os06g0603000 few stems gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060864 SE5 leaf color TO:0000326 PMID:10849355 IMP T Os06g0603000 yellow leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060864 SE5 days to flowering trait TO:0000344 PMID:10849355 IMP T Os06g0603000 early flowering gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0061191 SGR chlorophyll content on intact leaf TO:0012002 PMID:17513504 IMP T Os09g0532000 high chlorophyll content in leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 shoot apical meristem development TO:0006020 PMID:10095070 IMP T Os01g0527600 shoot apical meristem of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 coleoptile anatomy and morphology trait TO:0000753 PMID:10095070 IMP T Os01g0527600 coleoptile of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 plant embryo anatomy and morphology trait TO:0000064 PMID:10095070 IMP T Os01g0527600 epiblast of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 shoot apical meristem development TO:0006020 PMID:10095070 IMP T Os01g0527600 shoot apical meristem of the mature plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 coleoptile anatomy and morphology trait TO:0000753 PMID:10095070 IMP T Os01g0527600 coleoptile of the mature plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 leaf width TO:0000370 PMID:10095070 IMP T Os01g0527600 seedlings narrow leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 leaf size TO:0002637 PMID:10095070 IMP T Os01g0527600 seedlings small leaves. gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060880 SHL2 seedling vigor TO:0000280 PMID:10095070 IMP T Os01g0527600 Seedlings withered gene taxon:4530 20150429 Planteome:Ethan_Johnson -GR_gene GR:0060882 SHL4 shoot apical meristem development TO:0006020 PMID:10409508 IMP T Os03g0449200 shoot apical meristem not differentiated gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060882 SHL4 shoot system growth and development trait TO:0000654 PMID:10409508 IMP T Os03g0449200 shoot fails to grow gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060864 SE5 TO:0000326 PMID:10849355 IMP T Os06g0603000 yellow leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060864 SE5 TO:0000344 PMID:10849355 IMP T Os06g0603000 early flowering gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0061191 SGR TO:0012002 PMID:17513504 IMP T Os09g0532000 high chlorophyll content in leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0006020 PMID:10095070 IMP T Os01g0527600 shoot apical meristem of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0000753 PMID:10095070 IMP T Os01g0527600 coleoptile of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0000064 PMID:10095070 IMP T Os01g0527600 epiblast of the plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0006020 PMID:10095070 IMP T Os01g0527600 shoot apical meristem of the mature plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0000753 PMID:10095070 IMP T Os01g0527600 coleoptile of the mature plant embryo is lacking gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0000370 PMID:10095070 IMP T Os01g0527600 seedlings narrow leaves gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0002637 PMID:10095070 IMP T Os01g0527600 seedlings small leaves. gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060880 SHL2 TO:0000280 PMID:10095070 IMP T Os01g0527600 Seedlings withered gene taxon:4530 20150429 Planteome:Ethan_Johnson +GR_gene GR:0060882 SHL4 TO:0006020 PMID:10409508 IMP T Os03g0449200 shoot apical meristem not differentiated gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060882 SHL4 TO:0000654 PMID:10409508 IMP T Os03g0449200 shoot fails to grow gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0060882 SHL4 PMID:10409508 IMP Os03g0449200 coleoptile absent gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0060882 SHL4 PMID:10409508 IMP Os03g0449200 epiblast absent gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0060882 SHL4 PMID:10409508 IMP Os03g0449200 scutellum normal gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0060882 SHL4 PMID:10409508 IMP Os03g0449200 radicle normal gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060882 SHL4 root development trait TO:0000656 PMID:10409508 IMP T Os03g0449200 roots grow normally gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 shoot apical meristem development TO:0006020 GR_REF:1477 IMP T Os04g0509300 malformed shoot apical meristem gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 plastochron TO:0000735 GR_REF:1477 IMP T Os04g0509300 short plastochron gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 leaf shape TO:0000492 GR_REF:1477 IMP T Os04g0509300 aberrant leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 leaf number TO:0000241 GR_REF:1477 IMP T Os04g0509300 increased leaf production gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 leaf shape TO:0000492 GR_REF:1477 IMP T Os04g0509300 leaves thread-like (short/narrow) gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 shoot apical meristem development TO:0006020 GR_REF:1477 IMP T Os04g0509300 shoot apical meristem flat gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060883 SHO1 cell cycle trait TO:0000728 GR_REF:1477 IMP T Os04g0509300 disorganized cell division in shoot meristem gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 lemma morphology trait TO:1000023 GR_REF:6472 IMP T Os01g0129200 degenerated lemma gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 palea morphology trait TO:1000024 GR_REF:6472 IMP T Os01g0129200 degenerated palea gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 sterility or fertility trait TO:0000392 GR_REF:6472 IMP T Os01g0129200 stamen nonfunctional gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 male sterility TO:0000437 GR_REF:6472 IMP T Os01g0129200 male sterile gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 stamen anatomy and morphology trait TO:0000215 GR_REF:6472 IMP T Os01g0129200 stamens malformed gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 reproductive homeotic development trait TO:0002613 GR_REF:6472 IMP T Os01g0129200 stamens transformed to pistils gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 floret anatomy and morphology trait TO:0000274 GR_REF:6472 IMP T Os01g0129200 Mutant floret has 3 ovaries gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060936 SL1 fertility related trait TO:0000420 GR_REF:6472 IMP T Os01g0129200 female fertile gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060897 SLR shoot system anatomy and morphology trait TO:0000077 PMID:11340177 IMP T Os03g0707600 slender shoots gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060897 SLR internode length TO:0000145 PMID:11340177 IMP T Os03g0707600 basal internodes elongated gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060897 SLR root number TO:0000084 PMID:11340177 IMP T Os03g0707600 reduced root number gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060897 SLR root length TO:0000227 PMID:11340177 IMP T Os03g0707600 reduced root length gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060897 SLR plant cell length TO:0020107 PMID:11340177 IMP T Os03g0707600 increased cell length at leaf sheath gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080036 SNB floral bract number TO:0006026 PMID:17144896 IMP T Os07g0235800 multiple rudimentary bracts gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080036 SNB bract anatomy and morphology trait TO:0000815 PMID:17144896 IMP T Os07g0235800 rudimentary bract gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080036 SNB phyllotaxy TO:0006014 PMID:17144896 IMP T Os07g0235800 bracts in alternative phyllotaxy gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080036 SNB anatomy and morphology trait TO:0000017 PMID:17144896 IMP T Os07g0235800 interfered with subsequent floral architecture gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 panicle length TO:0000040 GR_REF:1712 IMP T Os11g0235200 short panicle gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 primary branch number TO:0000547 GR_REF:1712 IMP T Os11g0235200 absence of primary branches in lower part of ear axis gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 spikelets per panicle length TO:0000565 GR_REF:1712 IMP T Os11g0235200 spikelets per panicle decreased gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 primary branch number TO:0000547 GR_REF:1712 IMP T Os11g0235200 primary branches per panicle reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 secondary branch number TO:0000557 GR_REF:1712 IMP T Os11g0235200 secondary branches per primary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 relative spikelet number TO:0001033 GR_REF:1712 IMP T Os11g0235200 number of spikelets per primary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060900 SP1 relative spikelet number TO:0001033 GR_REF:1712 IMP T Os11g0235200 number of spikelets per secondary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080031 SPK protein content TO:0000598 PMID:8325505 IMP T Os10G0539600 decreased amount of proteins gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080031 SPK protein composition related trait TO:0000490 PMID:8325505 IMP T Os10G0539600 altered protein composition gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080031 SPK endosperm storage protein content TO:0002653 PMID:8325505 IMP T Os10G0539600 lacks seed storage gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060912 SPL11 leaf lamina color TO:0000299 PMID:10939258 IMP T Os12g0570000 rust colored spots over entire leaf blade during tillering gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060912 SPL11 leaf midrib color TO:0000720 PMID:10939258 IMP T Os12g0570000 rust colored spots most concentrated along midrib gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0060908 SPL7 leaf color TO:0000326 PMID:12032317 IMP T Os05g0530400 reddish brown spots on leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080023 SPY internode length TO:0000145 PMID:17052323 IMP T Os08g0559300 elongation of lower internodes gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080023 SPY leaf lamina joint bending TO:0002688 PMID:17052323 IMP T Os08g0559300 increased lamina joint bending gene taxon:4530 20150501 Planteome:Ethan_Johnson -!GR_gene GR:0000000 STAR1 aluminum sensitivity TO:0000354 PMID: 24253199 IMP T Os06g0695800 Sensitive to aluminum gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060882 SHL4 TO:0000656 PMID:10409508 IMP T Os03g0449200 roots grow normally gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0006020 GR_REF:1477 IMP T Os04g0509300 malformed shoot apical meristem gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0000735 GR_REF:1477 IMP T Os04g0509300 short plastochron gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0000492 GR_REF:1477 IMP T Os04g0509300 aberrant leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0000241 GR_REF:1477 IMP T Os04g0509300 increased leaf production gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0000492 GR_REF:1477 IMP T Os04g0509300 leaves thread-like (short/narrow) gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0006020 GR_REF:1477 IMP T Os04g0509300 shoot apical meristem flat gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060883 SHO1 TO:0000728 GR_REF:1477 IMP T Os04g0509300 disorganized cell division in shoot meristem gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:1000023 GR_REF:6472 IMP T Os01g0129200 degenerated lemma gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:1000024 GR_REF:6472 IMP T Os01g0129200 degenerated palea gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0000392 GR_REF:6472 IMP T Os01g0129200 stamen nonfunctional gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0000437 GR_REF:6472 IMP T Os01g0129200 male sterile gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0000215 GR_REF:6472 IMP T Os01g0129200 stamens malformed gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0002613 GR_REF:6472 IMP T Os01g0129200 stamens transformed to pistils gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0000274 GR_REF:6472 IMP T Os01g0129200 Mutant floret has 3 ovaries gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060936 SL1 TO:0000420 GR_REF:6472 IMP T Os01g0129200 female fertile gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060897 SLR TO:0000077 PMID:11340177 IMP T Os03g0707600 slender shoots gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060897 SLR TO:0000145 PMID:11340177 IMP T Os03g0707600 basal internodes elongated gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060897 SLR TO:0000084 PMID:11340177 IMP T Os03g0707600 reduced root number gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060897 SLR TO:0000227 PMID:11340177 IMP T Os03g0707600 reduced root length gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060897 SLR TO:0020107 PMID:11340177 IMP T Os03g0707600 increased cell length at leaf sheath gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080036 SNB TO:0006026 PMID:17144896 IMP T Os07g0235800 multiple rudimentary bracts gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080036 SNB TO:0000815 PMID:17144896 IMP T Os07g0235800 rudimentary bract gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080036 SNB TO:0006014 PMID:17144896 IMP T Os07g0235800 bracts in alternative phyllotaxy gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080036 SNB TO:0000017 PMID:17144896 IMP T Os07g0235800 interfered with subsequent floral architecture gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0000040 GR_REF:1712 IMP T Os11g0235200 short panicle gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0000547 GR_REF:1712 IMP T Os11g0235200 absence of primary branches in lower part of ear axis gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0000565 GR_REF:1712 IMP T Os11g0235200 spikelets per panicle decreased gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0000547 GR_REF:1712 IMP T Os11g0235200 primary branches per panicle reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0000557 GR_REF:1712 IMP T Os11g0235200 secondary branches per primary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0001033 GR_REF:1712 IMP T Os11g0235200 number of spikelets per primary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060900 SP1 TO:0001033 GR_REF:1712 IMP T Os11g0235200 number of spikelets per secondary branch reduced gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080031 SPK TO:0000598 PMID:8325505 IMP T Os10G0539600 decreased amount of proteins gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080031 SPK TO:0000490 PMID:8325505 IMP T Os10G0539600 altered protein composition gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080031 SPK TO:0002653 PMID:8325505 IMP T Os10G0539600 lacks seed storage gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060912 SPL11 TO:0000299 PMID:10939258 IMP T Os12g0570000 rust colored spots over entire leaf blade during tillering gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060912 SPL11 TO:0000720 PMID:10939258 IMP T Os12g0570000 rust colored spots most concentrated along midrib gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0060908 SPL7 TO:0000326 PMID:12032317 IMP T Os05g0530400 reddish brown spots on leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080023 SPY TO:0000145 PMID:17052323 IMP T Os08g0559300 elongation of lower internodes gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0080023 SPY TO:0002688 PMID:17052323 IMP T Os08g0559300 increased lamina joint bending gene taxon:4530 20150501 Planteome:Ethan_Johnson +!GR_gene GR:0000000 STAR1 TO:0000354 PMID: 24253199 IMP T Os06g0695800 Sensitive to aluminum gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0101258 TatC PMID:11244106 IMP Os01g0501700 pale green shoot gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC leaf color TO:0000326 PMID:11244106 IMP T Os01g0501700 pale green leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll content TO:0000495 PMID:11244106 IMP T Os01g0501700 shoot reduction in total chlorophyll gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll-a content TO:0000293 PMID:11244106 IMP T Os01g0501700 shoot reduction of chlorophyll-a gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll-b content TO:0000295 PMID:11244106 IMP T Os01g0501700 shoot reduction of chlorophyll-b gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll content TO:0000495 PMID:11244106 IMP T Os01g0501700 leaf reduction in total chlorophyll gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll-a content TO:0000293 PMID:11244106 IMP T Os01g0501700 leaf reduction of chlorophyll-a gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC chlorophyll-b content TO:0000295 PMID:11244106 IMP T Os01g0501700 leaf reduction of chlorophyll-b gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0101258 TatC abscisic acid content TO:0002667 PMID:11244106 IMP T Os01g0501700 basal level of abscisic acid (ABA) accumulation after 30minutes of drought treatment compared to rapid accumulation of ABA after 30 min of drought treatment in wild type plants. gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000326 PMID:11244106 IMP T Os01g0501700 pale green leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000495 PMID:11244106 IMP T Os01g0501700 shoot reduction in total chlorophyll gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000293 PMID:11244106 IMP T Os01g0501700 shoot reduction of chlorophyll-a gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000295 PMID:11244106 IMP T Os01g0501700 shoot reduction of chlorophyll-b gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000495 PMID:11244106 IMP T Os01g0501700 leaf reduction in total chlorophyll gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000293 PMID:11244106 IMP T Os01g0501700 leaf reduction of chlorophyll-a gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0000295 PMID:11244106 IMP T Os01g0501700 leaf reduction of chlorophyll-b gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0101258 TatC TO:0002667 PMID:11244106 IMP T Os01g0501700 basal level of abscisic acid (ABA) accumulation after 30minutes of drought treatment compared to rapid accumulation of ABA after 30 min of drought treatment in wild type plants. gene taxon:4530 20150501 Planteome:Ethan_Johnson !GR_gene GR:0101258 TatC PMID:11244106 IMP Os01g0501700 increased water loss from detached leaves gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0080012 TB1 inflorescence branching TO:0000050 PMID:12581309 IMP T Os03g0706500 reduced lateral branching gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0020145 TDR male sterility TO:0000437 PMID:16896230 IMP T Os02g0120500 male sterile gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0020145 TDR plant organ growth and development trait TO:0000927 PMID:16896230 IMP T Os02g0120500 abnormal stamen development gene taxon:4530 20150501 Planteome:Ethan_Johnson -GR_gene GR:0010807 TPC1 plant height TO:0000207 PMID:15111725 IMP T Os01g0678500 Semidwarf gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080007 UDT1 meiotic cell cycle trait TO:0000729 PMID:16141453 IMP T Os07g0549600 tapeta failed to differentiate during meiotic stage gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080007 UDT1 meiotic cell cycle trait TO:0000729 PMID:16141453 IMP T Os07g0549600 tapeta became vacuolated during meiotic phase gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080007 UDT1 meiotic cell cycle trait TO:0000729 PMID:16141453 IMP T Os07g0549600 meiocytes did not develop to microspores gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080007 UDT1 pollen free TO:0000245 PMID:16141453 IMP T Os07g0549600 anther locules didn't contain pollen grains gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 VP1 embryo development trait TO:0000620 PMID: 20805329 IMP T Os01g0911700 arrest of embryo growth gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 embryo development trait TO:0000620 PMID: 20805329 IMP T Os07g0164000 abnormal embryo development gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080012 TB1 TO:0000050 PMID:12581309 IMP T Os03g0706500 reduced lateral branching gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0020145 TDR TO:0000437 PMID:16896230 IMP T Os02g0120500 male sterile gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0020145 TDR TO:0000927 PMID:16896230 IMP T Os02g0120500 abnormal stamen development gene taxon:4530 20150501 Planteome:Ethan_Johnson +GR_gene GR:0010807 TPC1 TO:0000207 PMID:15111725 IMP T Os01g0678500 Semidwarf gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080007 UDT1 TO:0000729 PMID:16141453 IMP T Os07g0549600 tapeta failed to differentiate during meiotic stage gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080007 UDT1 TO:0000729 PMID:16141453 IMP T Os07g0549600 tapeta became vacuolated during meiotic phase gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080007 UDT1 TO:0000729 PMID:16141453 IMP T Os07g0549600 meiocytes did not develop to microspores gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080007 UDT1 TO:0000245 PMID:16141453 IMP T Os07g0549600 anther locules didn't contain pollen grains gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 VP1 TO:0000620 PMID: 20805329 IMP T Os01g0911700 arrest of embryo growth gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000620 PMID: 20805329 IMP T Os07g0164000 abnormal embryo development gene taxon:4530 20150504 Planteome:Ethan_Johnson !GR_gene GR:0000000 WAF1 PMID: 20805329 IMP Os07g0164000 incomplete penetrance of seedling lethality gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 leaf anatomy and morphology trait TO:0000748 PMID: 20805329 IMP T Os07g0164000 abnormal leaf morphology gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 root length TO:0000227 PMID: 20805329 IMP T Os07g0164000 short roots gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 lateral root number TO:0001013 PMID: 20805329 IMP T Os07g0164000 few lateral roots gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 panicle length TO:0000040 PMID: 20805329 IMP T Os07g0164000 short panicle gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 inflorescence bract length TO:0000817 PMID: 20805329 IMP T Os07g0164000 elongated bracts gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 spikelet anatomy and morphology trait TO:0000657 PMID: 20805329 IMP T Os07g0164000 abnormal spikelet morphology gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 floral organ number TO:0006038 PMID: 20805329 IMP T Os07g0164000 reduced floral organ number gene taxon:4530 20150504 Planteome:Ethan_Johnson -!GR_gene GR:0000000 WAF1 sterility related trait TO:0000485 PMID: 20805329 IMP T Os07g0164000 sterile gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080022 WDA1 fat and essential oil composition related trait TO:0000491 PMID:17138699 IMP T Os10g0471100 defects in very-long-chain fatty acids in anther gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080022 WDA1 inflorescence waxiness TO:0000787 PMID:17138699 IMP T Os10g0471100 epicuticular wax absent on anther gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000748 PMID: 20805329 IMP T Os07g0164000 abnormal leaf morphology gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000227 PMID: 20805329 IMP T Os07g0164000 short roots gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0001013 PMID: 20805329 IMP T Os07g0164000 few lateral roots gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000040 PMID: 20805329 IMP T Os07g0164000 short panicle gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000817 PMID: 20805329 IMP T Os07g0164000 elongated bracts gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000657 PMID: 20805329 IMP T Os07g0164000 abnormal spikelet morphology gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0006038 PMID: 20805329 IMP T Os07g0164000 reduced floral organ number gene taxon:4530 20150504 Planteome:Ethan_Johnson +!GR_gene GR:0000000 WAF1 TO:0000485 PMID: 20805329 IMP T Os07g0164000 sterile gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080022 WDA1 TO:0000491 PMID:17138699 IMP T Os10g0471100 defects in very-long-chain fatty acids in anther gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080022 WDA1 TO:0000787 PMID:17138699 IMP T Os10g0471100 epicuticular wax absent on anther gene taxon:4530 20150504 Planteome:Ethan_Johnson !GR_gene GR:0080022 WDA1 PMID:17138699 IMP Os10g0471100 microspore development retarded gene taxon:4530 20150504 Planteome:Ethan_Johnson !GR_gene GR:0080022 WDA1 PMID:17138699 IMP Os10g0471100 defective pollen exine formation in anthers gene taxon:4530 20150504 Planteome:Ethan_Johnson !GR_gene GR:0080022 WDA1 PMID:17138699 IMP Os10g0471100 primary alcohol levels reduced gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080014 YAB1 stamen number TO:0000225 PMID:15604733 IMP T Os07g0160100 produced additional stamens gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0080014 YAB1 carpel number TO:0006013 PMID:15604733 IMP T Os07g0160100 produced additional carpels gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0101186 ZEP1 leaf rolling TO:0000085 PMID:11244106 IMP T Os04g0448900 wilty gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0101186 ZEP1 germination rate TO:0000430 PMID:11244106 IMP T Os04g0448900 precocious germination gene taxon:4530 20150504 Planteome:Ethan_Johnson -GR_gene GR:0101186 ZEP1 abscisic acid content TO:0002667 PMID:11244106 IMP T Os04g0448900 low abscisic acid levels gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080014 YAB1 TO:0000225 PMID:15604733 IMP T Os07g0160100 produced additional stamens gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0080014 YAB1 TO:0006013 PMID:15604733 IMP T Os07g0160100 produced additional carpels gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0101186 ZEP1 TO:0000085 PMID:11244106 IMP T Os04g0448900 wilty gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0101186 ZEP1 TO:0000430 PMID:11244106 IMP T Os04g0448900 precocious germination gene taxon:4530 20150504 Planteome:Ethan_Johnson +GR_gene GR:0101186 ZEP1 TO:0002667 PMID:11244106 IMP T Os04g0448900 low abscisic acid levels gene taxon:4530 20150504 Planteome:Ethan_Johnson diff --git a/to-associations/to_gene_S.lycopersicum_PPPP.assoc b/to-associations/to_gene_S.lycopersicum_PPPP.assoc index 2f54326..8fd9861 100644 --- a/to-associations/to_gene_S.lycopersicum_PPPP.assoc +++ b/to-associations/to_gene_S.lycopersicum_PPPP.assoc @@ -1,203 +1,203 @@ -!gaf-version: 2.0 -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -SGN_gene 197 b beta-carotene content TO:0002695 PMID:25774204 IMP T Solyc06g074240 high fruit beta-carotene gene taxon:4081 20150710 Planteome:Ethan_Johnson -SGN_gene 197 b lycopene content TO:0002699 PMID:25774204 IMP T Solyc06g074240 low fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 197 b lycopene content TO:0002699 PMID:25774204 IMP T Solyc06g074240 high fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson +!gaf-version: 2.0 +!DB DB_Object_ID DB_Object_Symbol TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +SGN_gene 197 b TO:0002695 PMID:25774204 IMP T Solyc06g074240 high fruit beta-carotene gene taxon:4081 20150710 Planteome:Ethan_Johnson +SGN_gene 197 b TO:0002699 PMID:25774204 IMP T Solyc06g074240 low fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 197 b TO:0002699 PMID:25774204 IMP T Solyc06g074240 high fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 197 b PMID:25774204 IMP Solyc06g074240 tawny-orange corolla gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 187 bsr4 bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g007850 resistance to bacterial spot gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 187 bsr4 TO:0000315 PMID:25774204 IMP T Solyc05g007850 resistance to bacterial spot gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 187 bsr4 PMID:25774204 IMP Solyc05g007850 HR response against Xanthomonas campestris pv. vesicatoria gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 799 det1 fruit color TO:0002617 PMID:25774204 IMP T Solyc01g056340 mature green fruits are dark green (enhanced pigment) gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 799 det1 fruit color TO:0002617 PMID:25774204 IMP T Solyc01g056340 immature green fruits are dark green gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 799 det1 pigment content TO:0000494 PMID:25774204 IMP T Solyc01g056340 mature red fruits have enhanced pigment gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 799 det1 TO:0002617 PMID:25774204 IMP T Solyc01g056340 mature green fruits are dark green (enhanced pigment) gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 799 det1 TO:0002617 PMID:25774204 IMP T Solyc01g056340 immature green fruits are dark green gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 799 det1 TO:0000494 PMID:25774204 IMP T Solyc01g056340 mature red fruits have enhanced pigment gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 5560 gamybl1 PMID:25774204 IMP Solyc01g009070 no seed germination gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5560 gamybl1 gibberellic acid content TO:0002675 PMID:25774204 IMP T Solyc01g009070 gibberellin deficiency gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5560 gamybl1 TO:0002675 PMID:25774204 IMP T Solyc01g009070 gibberellin deficiency gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 961 man4 PMID:25774204 IMP Solyc01g008710 Inactive mannosidase in the fruit gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 292 y PMID:25774204 IMP Solyc01g079620 Decreased naringenin chalcone gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 292 y epicarp color TO:0002620 PMID:25774204 IMP T Solyc01g079620 Colorless fruit epidermis gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 292 y TO:0002620 PMID:25774204 IMP T Solyc01g079620 Colorless fruit epidermis gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 8308 CD2 PMID:25774204 IMP Solyc01g091630 Decreased cutin gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 253 chln leaf vein color TO:0000719 PMID:25774204 IMP T Solyc01g100490 yellow leaf veins gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 253 chln plant height TO:0000207 PMID:25774204 IMP T Solyc01g100490 small plant size gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 253 chln leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc01g100490 chlorotic upper leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 253 chln TO:0000719 PMID:25774204 IMP T Solyc01g100490 yellow leaf veins gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 253 chln TO:0000207 PMID:25774204 IMP T Solyc01g100490 small plant size gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 253 chln TO:0006060 PMID:25774204 IMP T Solyc01g100490 chlorotic upper leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 662 Gr PMID:25774204 IMP Solyc01g104340 green fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 662 Gr lycopene content TO:0002699 PMID:25774204 IMP T Solyc01g104340 decreased fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 662 Gr ethylene sensitivity TO:0000173 PMID:25774204 IMP T Solyc01g104340 reduced ethylene sensitivity in fruits gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 662 Gr leaf senescence TO:0000249 PMID:25774204 IMP T Solyc01g104340 delayed petal senescence gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 662 Gr TO:0002699 PMID:25774204 IMP T Solyc01g104340 decreased fruit lycopene gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 662 Gr TO:0000173 PMID:25774204 IMP T Solyc01g104340 reduced ethylene sensitivity in fruits gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 662 Gr TO:0000249 PMID:25774204 IMP T Solyc01g104340 delayed petal senescence gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 662 Gr PMID:25774204 IMP Solyc01g104340 Delayed floral abscission gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 662 Gr fruit growth and development trait TO:0000929 PMID:25774204 IMP T Solyc01g104340 fruit softening inhibited gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1515 ddb1 chlorophyll content TO:0000495 PMID:25774204 IMP T Solyc02g021650 chlorophyll increased gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1515 ddb1 carotenoid content TO:0000496 PMID:25774204 IMP T Solyc02g021650 carotenoids increased gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 662 Gr TO:0000929 PMID:25774204 IMP T Solyc01g104340 fruit softening inhibited gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1515 ddb1 TO:0000495 PMID:25774204 IMP T Solyc02g021650 chlorophyll increased gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1515 ddb1 TO:0000496 PMID:25774204 IMP T Solyc02g021650 carotenoids increased gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 1515 ddb1 PMID:25774204 IMP Solyc02g021650 ascorbic acid increased gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 1515 ddb1 PMID:25774204 IMP Solyc02g021650 increased plastid number gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1515 ddb1 plastid development trait TO:0002714 PMID:25774204 IMP T Solyc02g021650 increased plastid size gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1515 ddb1 leaf color TO:0000326 PMID:25774204 IMP T Solyc02g021650 dark green leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1515 ddb1 fruit color TO:0002617 PMID:25774204 IMP T Solyc02g021650 deep red fruits gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1515 ddb1 TO:0002714 PMID:25774204 IMP T Solyc02g021650 increased plastid size gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1515 ddb1 TO:0000326 PMID:25774204 IMP T Solyc02g021650 dark green leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1515 ddb1 TO:0002617 PMID:25774204 IMP T Solyc02g021650 deep red fruits gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 301 s PMID:25774204 IMP Solyc02g077390 compound inflorescence gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5483 LeT6 leaf midvein anatomy and morphology trait TO:0000822 PMID:25774204 IMP T Solyc02g081120 midvein foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5483 LeT6 leaf vein size TO:0000821 PMID:25774204 IMP T Solyc02g081120 lateral vein foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5483 LeT6 petiole size TO:0000768 PMID:25774204 IMP T Solyc02g081120 petiole foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5483 LeT6 vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T Solyc02g081120 crumpled leaf gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5483 LeT6 TO:0000822 PMID:25774204 IMP T Solyc02g081120 midvein foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5483 LeT6 TO:0000821 PMID:25774204 IMP T Solyc02g081120 lateral vein foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5483 LeT6 TO:0000768 PMID:25774204 IMP T Solyc02g081120 petiole foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5483 LeT6 TO:0000419 PMID:25774204 IMP T Solyc02g081120 crumpled leaf gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 5483 LeT6 PMID:25774204 IMP Solyc02g081120 Leaves 3-4 pinnately compound with clavate segments gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 5483 LeT6 internode length TO:0000145 PMID:25774204 IMP T Solyc02g081120 Shortened internodes gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 128 an flower shape TO:0000859 PMID:25774204 IMP T Solyc02g081670 flowers greatly changed gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 5483 LeT6 TO:0000145 PMID:25774204 IMP T Solyc02g081120 Shortened internodes gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 128 an TO:0000859 PMID:25774204 IMP T Solyc02g081670 flowers greatly changed gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 128 an PMID:25774204 IMP Solyc02g081670 compound inflorescence gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1094 o fruit shape TO:0002628 PMID:25774204 IMP T Solyc02g085500 ovate fruit gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1094 o fruit shape TO:0002628 PMID:25774204 IMP T Solyc02g085500 pear shaped fruit gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1094 o TO:0002628 PMID:25774204 IMP T Solyc02g085500 ovate fruit gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1094 o TO:0002628 PMID:25774204 IMP T Solyc02g085500 pear shaped fruit gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 8213 CER6 PMID:25774204 IMP Solyc02g085870 Increased water loss gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 428 d leaf color TO:0000326 PMID:25774204 IMP T Solyc02g089160 leaves dark gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 428 d TO:0000326 PMID:25774204 IMP T Solyc02g089160 leaves dark gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 leaves rugose gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts extremely foreshortened gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts shortened gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow color of ripe fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1599 psy1 flower color TO:0000537 PMID:25774204 IMP T Solyc03g031860 lighter yellow flowers gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 reddish color of ripe fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1599 psy1 TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow color of ripe fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1599 psy1 TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1599 psy1 TO:0000537 PMID:25774204 IMP T Solyc03g031860 lighter yellow flowers gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1599 psy1 TO:0002617 PMID:25774204 IMP T Solyc03g031860 reddish color of ripe fruit flesh gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 4476 zep PMID:25774204 IMP Solyc02g090890 wilty gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 4476 zep abscisic acid content TO:0002667 PMID:25774204 IMP T Solyc02g090890 abscisic acid deficiency gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 4476 zep TO:0002667 PMID:25774204 IMP T Solyc02g090890 abscisic acid deficiency gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 199 CrtR-b2 PMID:25774204 IMP Solyc03g007960 buff color corolla gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1418 sucr sucrose content TO:0000328 PMID:25774204 IMP T Solyc03g083910 mature fruit accumulates sucrose gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1418 sucr TO:0000328 PMID:25774204 IMP T Solyc03g083910 mature fruit accumulates sucrose gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 120 asc PMID:25774204 IMP Solyc03g114600 resistant to alternaria stem canker gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 532 fa PMID:25774204 IMP Solyc03g118160 giant gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 532 fa PMID:25774204 IMP Solyc03g118160 vegetative gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 532 fa inflorescence branching TO:0000050 PMID:25774204 IMP T Solyc03g118160 highly ramified inflorescence gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 532 fa sterility related trait TO:0000485 PMID:25774204 IMP T Solyc03g118160 completely sterile gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 431 div plant height TO:0000207 PMID:25774204 IMP T Solyc03g119060 small plant gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 532 fa TO:0000050 PMID:25774204 IMP T Solyc03g118160 highly ramified inflorescence gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 532 fa TO:0000485 PMID:25774204 IMP T Solyc03g118160 completely sterile gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 431 div TO:0000207 PMID:25774204 IMP T Solyc03g119060 small plant gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 431 div PMID:25774204 IMP Solyc03g119060 squarrose plant gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 431 div leaf color TO:0000326 PMID:25774204 IMP T Solyc03g119060 intercostally yellowish leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 431 div leaf color TO:0000326 PMID:25774204 IMP T Solyc03g119060 ventrally purple leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 996 SlMlo1 fungal disease resistance TO:0000439 PMID:25774204 IMP T Solyc04g049090 resistance to powdery mildew gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 plant height TO:0000207 PMID:25774204 IMP T Solyc04g051510 Dwarf gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Solyc04g051510 short and thick hypocotyls gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 fertility related trait TO:0000420 PMID:25774204 IMP T Solyc04g051510 reduced fertility. gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 cotyledon anatomy and morphology trait TO:0000749 PMID:25774204 IMP T Solyc04g051510 curled cotyledons gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 431 div TO:0000326 PMID:25774204 IMP T Solyc03g119060 intercostally yellowish leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 431 div TO:0000326 PMID:25774204 IMP T Solyc03g119060 ventrally purple leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 996 SlMlo1 TO:0000439 PMID:25774204 IMP T Solyc04g049090 resistance to powdery mildew gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0000207 PMID:25774204 IMP T Solyc04g051510 Dwarf gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0000757 PMID:25774204 IMP T Solyc04g051510 short and thick hypocotyls gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0000420 PMID:25774204 IMP T Solyc04g051510 reduced fertility. gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0000749 PMID:25774204 IMP T Solyc04g051510 curled cotyledons gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 347 cu3 PMID:25774204 IMP Solyc04g051510 dense leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 leaf curling TO:0002681 PMID:25774204 IMP T Solyc04g051510 curly leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 347 cu3 plant height TO:0000207 PMID:25774204 IMP T Solyc04g051510 reduced height to 50% gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 8373 ORR fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc04g057980 orange ripening gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0002681 PMID:25774204 IMP T Solyc04g051510 curly leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 347 cu3 TO:0000207 PMID:25774204 IMP T Solyc04g051510 reduced height to 50% gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 8373 ORR TO:0002633 PMID:25774204 IMP T Solyc04g057980 orange ripening gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 463 e PMID:25774204 IMP Solyc04g076850 few fused leaf segments gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 463 e leaf midvein anatomy and morphology trait TO:0000822 PMID:25774204 IMP T Solyc04g076850 distorted midvein gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 463 e TO:0000822 PMID:25774204 IMP T Solyc04g076850 distorted midvein gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 463 e PMID:25774204 IMP Solyc04g076850 entire or broad leaflets gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 463 e sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc04g076850 asymmetrical sepals gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 463 e leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc04g076850 simple leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 463 e plant trait TO:0000387 PMID:25774204 IMP T Solyc04g076850 multifusion phenotype gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 463 e TO:0000864 PMID:25774204 IMP T Solyc04g076850 asymmetrical sepals gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 463 e TO:0000748 PMID:25774204 IMP T Solyc04g076850 simple leaves gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 463 e TO:0000387 PMID:25774204 IMP T Solyc04g076850 multifusion phenotype gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 4495 cwp1 PMID:25774204 IMP Solyc04g082520 dehydration of fruits gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 4495 cwp1 PMID:25774204 IMP Solyc04g082520 microfissuring of fruit cuticle gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 900 lyr leaf shape TO:0000492 PMID:25774204 IMP T Solyc05g009380 first leaves entire (simple) gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 900 lyr leaf shape TO:0000492 PMID:25774204 IMP T Solyc05g009380 other leaves fan shaped gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 900 lyr female sterility TO:0000358 PMID:25774204 IMP T Solyc05g009380 female sterile gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1296 mc sepal size TO:0002604 PMID:25774204 IMP T Solyc05g012020 Sepal large gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1296 mc sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc05g012020 Leaf-like sepal gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 900 lyr TO:0000492 PMID:25774204 IMP T Solyc05g009380 first leaves entire (simple) gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 900 lyr TO:0000492 PMID:25774204 IMP T Solyc05g009380 other leaves fan shaped gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 900 lyr TO:0000358 PMID:25774204 IMP T Solyc05g009380 female sterile gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1296 mc TO:0002604 PMID:25774204 IMP T Solyc05g012020 Sepal large gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 1296 mc TO:0000864 PMID:25774204 IMP T Solyc05g012020 Leaf-like sepal gene taxon:4081 20150713 Planteome:Ethan_Johnson !SGN_gene 1296 mc PMID:25774204 IMP Solyc05g012020 pedicel joint enlarged gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 1296 mc inflorescence anatomy and morphology trait TO:0000373 PMID:25774204 IMP T Solyc05g012020 inflorescence indeterminate gene taxon:4081 20150713 Planteome:Ethan_Johnson -SGN_gene 541 Fen bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g013290 resistance to Pseudomonas syringae gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1238 Pto bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g013300 resistance to Pseudomonas syringae gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1238 Pto insecticide sensitivity TO:0000182 PMID:25774204 IMP T Solyc05g013300 fenthion sensitivity gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1296 rin fruit color TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits green at maturity gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1296 rin fruit color TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits turning bright yellow, gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1296 rin fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc05g056620 retarded ripening gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1296 mc TO:0000373 PMID:25774204 IMP T Solyc05g012020 inflorescence indeterminate gene taxon:4081 20150713 Planteome:Ethan_Johnson +SGN_gene 541 Fen TO:0000315 PMID:25774204 IMP T Solyc05g013290 resistance to Pseudomonas syringae gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1238 Pto TO:0000315 PMID:25774204 IMP T Solyc05g013300 resistance to Pseudomonas syringae gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1238 Pto TO:0000182 PMID:25774204 IMP T Solyc05g013300 fenthion sensitivity gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1296 rin TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits green at maturity gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1296 rin TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits turning bright yellow, gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1296 rin TO:0002633 PMID:25774204 IMP T Solyc05g056620 retarded ripening gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 271 cf2 PMID:25774204 IMP solyc06g008300 Resistant to Cladosporium fulvum gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 1322 sp PMID:25774204 IMP Solyc06g074350 indeterminate growth habit gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 1322 sp PMID:25774204 IMP Solyc06g074350 determinate habit gene taxon:4081 20150714 Planteome:Ethan_Johnson -!SGN_gene 43107 Cul1 self-incompatibility PMID:25774204 IMP T Solyc06g084520 pollen rejection gene taxon:4081 20150714 Planteome:Ethan_Johnson +!SGN_gene 43107 Cul1 PMID:25774204 IMP T Solyc06g084520 pollen rejection gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 43107 Cul1 PMID:25774204 IMP Solyc06g084520 compatibility on styles gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1068 not leaf color TO:0000326 PMID:25774204 IMP T Solyc07g056570 green-yellow leaves gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1068 not leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g056570 delicate leaves gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1068 not leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in hot weather gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1068 not leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in dry weather gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1068 not TO:0000326 PMID:25774204 IMP T Solyc07g056570 green-yellow leaves gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1068 not TO:0000748 PMID:25774204 IMP T Solyc07g056570 delicate leaves gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1068 not TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in hot weather gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1068 not TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in dry weather gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 483 etr2 PMID:25774204 IMP Solyc07g056580 delayed abscission gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 483 etr2 internode length TO:0000145 PMID:25774204 IMP T Solyc07g056580 shorter internode length gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 780 ls basal axillary branch number TO:0020024 PMID:25774204 IMP T Solyc07g066250 Few or no axillary branches gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 483 etr2 TO:0000145 PMID:25774204 IMP T Solyc07g056580 shorter internode length gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 780 ls TO:0020024 PMID:25774204 IMP T Solyc07g066250 Few or no axillary branches gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 780 ls PMID:25774204 IMP Solyc07g066250 corolla suppressed gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 780 ls male sterility TO:0000437 PMID:25774204 IMP T Solyc07g066250 partially male sterile gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 661 gf fruit color TO:0002617 PMID:25774204 IMP T Solyc08g080090 ripe fruit purplish-brown color. gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 762 lin5 sugar content TO:0000333 PMID:25774204 IMP T Solyc09g010080 high fruit sugar gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1164 phyA red light sensitivity TO:0000158 PMID:25774204 IMP T Solyc10g044670 far red light insensitive gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 111013 sun fruit length TO:0002626 PMID:25774204 IMP T Solyc10g079240 elongated fruit shape gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 246 crtiso fruit color TO:0002617 PMID:25774204 IMP T Solyc10g081650 fruit flesh orange gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 780 ls TO:0000437 PMID:25774204 IMP T Solyc07g066250 partially male sterile gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 661 gf TO:0002617 PMID:25774204 IMP T Solyc08g080090 ripe fruit purplish-brown color. gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 762 lin5 TO:0000333 PMID:25774204 IMP T Solyc09g010080 high fruit sugar gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1164 phyA TO:0000158 PMID:25774204 IMP T Solyc10g044670 far red light insensitive gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 111013 sun TO:0002626 PMID:25774204 IMP T Solyc10g079240 elongated fruit shape gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 246 crtiso TO:0002617 PMID:25774204 IMP T Solyc10g081650 fruit flesh orange gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 stamens orange gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 yellowish growing point gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 246 crtiso leaf color TO:0000326 PMID:25774204 IMP T Solyc10g081650 light green foliage gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 246 crtiso TO:0000326 PMID:25774204 IMP T Solyc10g081650 light green foliage gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 yellowing near growing point gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 755 j plant height TO:0000207 PMID:25774204 IMP T Solyc11g010570 higher plant gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 755 j internode length TO:0000145 PMID:25774204 IMP T Solyc11g010570 long internodes gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 755 j fruit weight TO:0002746 PMID:25774204 IMP T Solyc11g010570 heavier fruits gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 755 j seed number TO:0000445 PMID:25774204 IMP T Solyc11g010570 less seeds gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 755 j inflorescence branch anatomy and morphology trait TO:0000784 PMID:25774204 IMP T Solyc11g010570 Jointless pedicels gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 755 j TO:0000207 PMID:25774204 IMP T Solyc11g010570 higher plant gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 755 j TO:0000145 PMID:25774204 IMP T Solyc11g010570 long internodes gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 755 j TO:0002746 PMID:25774204 IMP T Solyc11g010570 heavier fruits gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 755 j TO:0000445 PMID:25774204 IMP T Solyc11g010570 less seeds gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 755 j TO:0000784 PMID:25774204 IMP T Solyc11g010570 Jointless pedicels gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 755 j PMID:25774204 IMP Solyc11g010570 proliferated inflorescence. Growth rate increased gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 4504 GAI PMID:25774204 IMP Solyc11g011260 suppressed axillary bud development gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1187 ptox chlorophyll content TO:0000495 PMID:25774204 IMP T Solyc11g011990 incomplete chlorophyll deficiency gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 717 i2 fungal disease resistance TO:0000439 PMID:25774204 IMP T Solyc11g071430 Resistance to Fusarium oxysporum gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 538 fas carpel anatomy and morphology trait TO:0006012 PMID:25774204 IMP T Solyc11g071810 unfused carpels gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1187 ptox TO:0000495 PMID:25774204 IMP T Solyc11g011990 incomplete chlorophyll deficiency gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 717 i2 TO:0000439 PMID:25774204 IMP T Solyc11g071430 Resistance to Fusarium oxysporum gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 538 fas TO:0006012 PMID:25774204 IMP T Solyc11g071810 unfused carpels gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 538 fas PMID:25774204 IMP Solyc11g071810 Fruits many-loculed gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 391 del fruit color TO:0002617 PMID:25774204 IMP T Solyc12g008980 reddish-orange mature fruit color gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 391 del TO:0002617 PMID:25774204 IMP T Solyc12g008980 reddish-orange mature fruit color gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 391 del PMID:25774204 IMP Solyc12g008980 lycopene inhibition gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 391 del carotene content TO:0000289 PMID:25774204 IMP T Solyc12g008980 increased delta-carotene gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1605 yg2 leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc12g009470 Foliage chlorotic yellow-green gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1605 yg2 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Solyc12g009470 long hypocotyls gene taxon:4081 20150714 Planteome:Ethan_Johnson -SGN_gene 1605 yg2 leaf color TO:0000326 PMID:25774204 IMP T Solyc12g009470 All foliar parts yellow gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 391 del TO:0000289 PMID:25774204 IMP T Solyc12g008980 increased delta-carotene gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1605 yg2 TO:0006060 PMID:25774204 IMP T Solyc12g009470 Foliage chlorotic yellow-green gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1605 yg2 TO:0000757 PMID:25774204 IMP T Solyc12g009470 long hypocotyls gene taxon:4081 20150714 Planteome:Ethan_Johnson +SGN_gene 1605 yg2 TO:0000326 PMID:25774204 IMP T Solyc12g009470 All foliar parts yellow gene taxon:4081 20150714 Planteome:Ethan_Johnson !SGN_gene 482 etr1 PMID:25774204 IMP Solyc12g011330 Delayed abscission gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 482 etr1 internode length TO:0000145 PMID:25774204 IMP T Solyc12g011330 Shorter internode length gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 482 etr1 TO:0000145 PMID:25774204 IMP T Solyc12g011330 Shorter internode length gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 482 etr1 PMID:25774204 IMP Solyc12g011330 Reduced auxin movement gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 277 cf9 fungal disease resistance TO:0000439 PMID:25774204 IMP T AJ002236 Resistance to Cladosporium fulvum gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 687 hero nematode damage resistance TO:0000384 PMID:25774204 IMP T AJ457051 Resistance to potato cyst nematode gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 43154 HT-A self-incompatibility TO:0000310 PMID:25774204 IMP T AB066584 self-incompatibility gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 43154 HT-A gametophytic incompatibility TO:0000049 PMID:25774204 IMP T AB066582 gametophytic self-incompatibility. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 277 cf9 TO:0000439 PMID:25774204 IMP T AJ002236 Resistance to Cladosporium fulvum gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 687 hero TO:0000384 PMID:25774204 IMP T AJ457051 Resistance to potato cyst nematode gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 43154 HT-A TO:0000310 PMID:25774204 IMP T AB066584 self-incompatibility gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 43154 HT-A TO:0000049 PMID:25774204 IMP T AB066582 gametophytic self-incompatibility. gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 881 lc PMID:25774204 IMP JF284938 Reduced locule number gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 881 lc PMID:25774204 IMP JF285116 High locule number gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1305 Mi1-2 nematode damage resistance TO:0000384 PMID:25774204 IMP T SGN-U564276 High-level root-knot nematode resistance gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1305 Mi1-2 aphid resistance TO:0006067 PMID:25774204 IMP T SGN-U564276 Resistance to potato aphids gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1305 Mi1-2 TO:0000384 PMID:25774204 IMP T SGN-U564276 High-level root-knot nematode resistance gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1305 Mi1-2 TO:0006067 PMID:25774204 IMP T SGN-U564276 Resistance to potato aphids gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1305 Mi1-2 PMID:25774204 IMP T SGN-U564276 Resistance to potato whitefly gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1345 sit plant height TO:0000207 PMID:25774204 IMP T HQ317907 Smaller plant gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1345 sit leaf height TO:0000541 PMID:25774204 IMP T HQ317907 very short leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1345 sit leaf curling TO:0002681 PMID:25774204 IMP T HQ317907 leaves down curled gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1345 sit leaf necrosis TO:0000652 PMID:25774204 IMP T HQ317907 becoming necrotic gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1345 sit abscisic acid content TO:0002667 PMID:25774204 IMP T HQ317908 Abscisic acid deficient gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1345 sit TO:0000207 PMID:25774204 IMP T HQ317907 Smaller plant gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1345 sit TO:0000541 PMID:25774204 IMP T HQ317907 very short leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1345 sit TO:0002681 PMID:25774204 IMP T HQ317907 leaves down curled gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1345 sit TO:0000652 PMID:25774204 IMP T HQ317907 becoming necrotic gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1345 sit TO:0002667 PMID:25774204 IMP T HQ317908 Abscisic acid deficient gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1345 sit PMID:25774204 IMP HQ317908 wilty gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1462 tm2 PMID:25774204 IMP FJ817603 High-level tobacco mosaic virus resistance gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 111014 wo PMID:25774204 IMP Solyc02g080490 All parts densely pubescent gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 111014 wo PMID:25774204 IMP Solyc02g080490 wooly gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 Determinate habit gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 strongly uprolled pinnae gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl flower shape TO:0000859 PMID:25774204 IMP T Solyc11g069030 fasciated flowers gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl fruit shape TO:0002628 PMID:25774204 IMP T Solyc11g069030 fasciated fruits gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl stem anatomy and morphology trait TO:0000361 PMID:25774204 IMP T Solyc11g069030 Stem terminating in first inflorescence gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0000859 PMID:25774204 IMP T Solyc11g069030 fasciated flowers gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0002628 PMID:25774204 IMP T Solyc11g069030 fasciated fruits gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0000361 PMID:25774204 IMP T Solyc11g069030 Stem terminating in first inflorescence gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 midribs may develop adventitious shoots gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 Determinant growth gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc11g069030 leafy calyx gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc11g069030 enlarged calyx gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 212 bl inflorescence anatomy and morphology trait TO:0000373 PMID:25774204 IMP T Solyc11g069030 few flowered inflorescence gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1045 nr fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc09g075440 Fruits ripen slowly gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1045 nr fruit color TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruits dirty orange color gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1046 Nr2 fruit color TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruit flesh turns slowly to yellowish green gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1046 Nr2 fruit firmness TO:0002634 PMID:25774204 IMP T Solyc09g075440 fruit flesh firm gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 555 flc leaf color TO:0000326 PMID:25774204 IMP T Solyc07g066480 yellowish leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 555 flc leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g066480 overwilting leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 555 flc leaf height TO:0000541 PMID:25774204 IMP T Solyc07g066480 short leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0000864 PMID:25774204 IMP T Solyc11g069030 leafy calyx gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0000864 PMID:25774204 IMP T Solyc11g069030 enlarged calyx gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 212 bl TO:0000373 PMID:25774204 IMP T Solyc11g069030 few flowered inflorescence gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1045 nr TO:0002633 PMID:25774204 IMP T Solyc09g075440 Fruits ripen slowly gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1045 nr TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruits dirty orange color gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1046 Nr2 TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruit flesh turns slowly to yellowish green gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1046 Nr2 TO:0002634 PMID:25774204 IMP T Solyc09g075440 fruit flesh firm gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 555 flc TO:0000326 PMID:25774204 IMP T Solyc07g066480 yellowish leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 555 flc TO:0000085 PMID:25774204 IMP T Solyc07g066480 overwilting leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 555 flc TO:0000541 PMID:25774204 IMP T Solyc07g066480 short leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 555 flc PMID:25774204 IMP Solyc07g066480 nearly unbranched plant and later spreading gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 555 flc PMID:25774204 IMP Solyc07g066480 erect plant gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 555 flc plant height TO:0000207 PMID:25774204 IMP T Solyc07g066480 small plant gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 539 fer leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc06g051550 Severe chlorosis beginning in first true leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 539 fer mineral and ion transport trait TO:0020096 PMID:25774204 IMP T Solyc06g051550 faulty iron transport in xylem gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062680 simple leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062680 entire leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la leaf size TO:0002637 PMID:25774204 IMP T Solyc07g062680 small leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la leaf length TO:0000135 PMID:25774204 IMP T Solyc07g062680 elongated leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la stem width TO:0001035 PMID:25774204 IMP T Solyc07g062680 slender stems gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la inflorescence branching TO:0000050 PMID:25774204 IMP T Solyc07g062680 excessively branched gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 776 la fruit size TO:0002625 PMID:25774204 IMP T Solyc07g062680 small fruits gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 8229 GOB leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062840 simple leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 8229 GOB shoot apical meristem development TO:0006020 PMID:25774204 IMP T Solyc07g062840 shoot apical meristem terminates gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1465 APS1 gravity response trait TO:0002693 PMID:25774204 IMP T In seedlings, roots grow agravitropicaly for first 4-5 days after germination, then gradually re-orientation towards gravity. gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1465 APS1 gravity response trait TO:0002693 PMID:25774204 IMP T APS1 Shoots show mild agravitropism throughout life of plant. gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1465 APS1 fruit size TO:0002625 PMID:25774204 IMP T APS1 Fruit size slightly reduced. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 555 flc TO:0000207 PMID:25774204 IMP T Solyc07g066480 small plant gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 539 fer TO:0006060 PMID:25774204 IMP T Solyc06g051550 Severe chlorosis beginning in first true leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 539 fer TO:0020096 PMID:25774204 IMP T Solyc06g051550 faulty iron transport in xylem gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0000748 PMID:25774204 IMP T Solyc07g062680 simple leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0000748 PMID:25774204 IMP T Solyc07g062680 entire leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0002637 PMID:25774204 IMP T Solyc07g062680 small leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0000135 PMID:25774204 IMP T Solyc07g062680 elongated leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0001035 PMID:25774204 IMP T Solyc07g062680 slender stems gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0000050 PMID:25774204 IMP T Solyc07g062680 excessively branched gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 776 la TO:0002625 PMID:25774204 IMP T Solyc07g062680 small fruits gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 8229 GOB TO:0000748 PMID:25774204 IMP T Solyc07g062840 simple leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 8229 GOB TO:0006020 PMID:25774204 IMP T Solyc07g062840 shoot apical meristem terminates gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1465 APS1 TO:0002693 PMID:25774204 IMP T In seedlings, roots grow agravitropicaly for first 4-5 days after germination, then gradually re-orientation towards gravity. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1465 APS1 TO:0002693 PMID:25774204 IMP T APS1 Shoots show mild agravitropism throughout life of plant. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1465 APS1 TO:0002625 PMID:25774204 IMP T APS1 Fruit size slightly reduced. gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1465 APS1 PMID:25774204 IMP APS1 Root tips do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1465 APS1 PMID:25774204 IMP APS1 leaves do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1465 APS1 PMID:25774204 IMP APS1 fruit do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 1465 APS1 PMID:25774204 IMP APS1 stems do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1465 APS1 starch content TO:0000696 PMID:25774204 IMP T APS1 Starch levels in mature green fruit below detection limit of spectrophotometric assay. gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 1465 APS1 sugar content TO:0000333 PMID:25774204 IMP T APS1 BRIX levels slightly lower than wild type. gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 20827 rdr6 leaf width TO:0000370 PMID:25774204 IMP T Solyc04g014870 slender leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 20827 rdr6 plant height TO:0000207 PMID:25774204 IMP T Solyc04g014870 dwarfed plant gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 20827 rdr6 petal width TO:0002606 PMID:25774204 IMP T Solyc04g014870 slender petals gene taxon:4081 20150715 Planteome:Ethan_Johnson -SGN_gene 20827 rdr6 leaf shape TO:0000492 PMID:25774204 IMP T Solyc04g014870 shoestring leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1465 APS1 TO:0000696 PMID:25774204 IMP T APS1 Starch levels in mature green fruit below detection limit of spectrophotometric assay. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 1465 APS1 TO:0000333 PMID:25774204 IMP T APS1 BRIX levels slightly lower than wild type. gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 20827 rdr6 TO:0000370 PMID:25774204 IMP T Solyc04g014870 slender leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 20827 rdr6 TO:0000207 PMID:25774204 IMP T Solyc04g014870 dwarfed plant gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 20827 rdr6 TO:0002606 PMID:25774204 IMP T Solyc04g014870 slender petals gene taxon:4081 20150715 Planteome:Ethan_Johnson +SGN_gene 20827 rdr6 TO:0000492 PMID:25774204 IMP T Solyc04g014870 shoestring leaves gene taxon:4081 20150715 Planteome:Ethan_Johnson !SGN_gene 20827 rdr6 PMID:25774204 IMP Solyc04g014870 no leaf blade expansion gene taxon:4081 20150715 Planteome:Ethan_Johnson diff --git a/to-associations/to_gene_Z.mays_PPPP.assoc b/to-associations/to_gene_Z.mays_PPPP.assoc index c273203..ab363f4 100644 --- a/to-associations/to_gene_Z.mays_PPPP.assoc +++ b/to-associations/to_gene_Z.mays_PPPP.assoc @@ -1,317 +1,317 @@ -!gaf-version: 2.0 -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -MaizeGDB 104331 ns2 internode length TO:0000145 PMID:17571927 IMP T NM_001111772.1 extremely shortened internodes gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 104331 ns2 plant height TO:0000207 PMID:17571927 IMP T NM_001111772.1 Plants are reduced in height gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 104331 ns2 stem elongation TO:0006036 PMID:17571927 IMP T NM_001111772.1 Plants (stems) do not elongate in response to gibberellins. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 106358 crs2 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G132021 Seedling leaves are white. gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 111820 abph1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G035688 Two leaves at each node, in decussate phyllotaxy. gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 112957 bsd2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G062788 chloroplasts contain rudimentary lamellae gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 112957 bsd2 seedling cotyledon color TO:0000750 PMID:25725436 IMP T GRMZM2G062788 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 112957 bsd2 seedling growth and development trait TO:0000949 PMID:25725436 IMP T GRMZM2G062788 seedling dies after endosperm is used up gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 113518 ms26 anther shape TO:0000214 PMID:24112765 IMP T GRMZM2G091822 Anthers shriveled gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 113518 ms26 male sterility TO:0000437 PMID:24112765 IMP T GRMZM2G091822 Male sterile gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 113518 ms26 pollen free TO:0000245 PMID:24112765 IMP T GRMZM2G091822 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 114025 rtcs1 lateral root number TO:0001013 PMID:23843603 IMP T GRMZM2G092542 few or no secondary roots gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G026930 Aleurone layer is colored gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G026930 no color in aleurone gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 anther color TO:0000187 PMID:21423772 IMP T GRMZM2G026930 anthers are green gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G026930 lack of anthocyanins in aleurone gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 pericarp color TO:0000707 PMID:21423772 IMP T GRMZM2G026930 The pericarp is brown gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 seedling vigor TO:0000280 PMID:21423772 IMP T GRMZM2G026930 seedling dies gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12000 a1 style color TO:0000676 PMID:21423772 IMP T GRMZM2G026930 silks are green gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12006 a2 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G345717 Aleurone layer is colored gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12006 a2 anther color TO:0000187 PMID:21423772 IMP T GRMZM2G345717 anthers are green gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12028 ae1 endosperm quality TO:0000587 PMID:21423772 IMP T GRMZM2G032628 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12028 ae1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G032628 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12028 ae1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G032628 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12029 afd1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G059037 Anthers shriveled gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12029 afd1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G059037 Male sterile gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12029 afd1 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G059037 Pollen absent or aborted. gene taxon:4577 20150527 Planteome:Ethan_Johnson +!gaf-version: 2.0 +!DB DB_Object_ID DB_Object_Symbol TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +MaizeGDB 104331 ns2 TO:0000145 PMID:17571927 IMP T NM_001111772.1 extremely shortened internodes gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 104331 ns2 TO:0000207 PMID:17571927 IMP T NM_001111772.1 Plants are reduced in height gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 104331 ns2 TO:0006036 PMID:17571927 IMP T NM_001111772.1 Plants (stems) do not elongate in response to gibberellins. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 106358 crs2 TO:0000326 PMID:21423772 IMP T GRMZM2G132021 Seedling leaves are white. gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 111820 abph1 TO:0000748 PMID:21423772 IMP T GRMZM2G035688 Two leaves at each node, in decussate phyllotaxy. gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 112957 bsd2 TO:0002715 PMID:25725436 IMP T GRMZM2G062788 chloroplasts contain rudimentary lamellae gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 112957 bsd2 TO:0000750 PMID:25725436 IMP T GRMZM2G062788 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 112957 bsd2 TO:0000949 PMID:25725436 IMP T GRMZM2G062788 seedling dies after endosperm is used up gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 113518 ms26 TO:0000214 PMID:24112765 IMP T GRMZM2G091822 Anthers shriveled gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 113518 ms26 TO:0000437 PMID:24112765 IMP T GRMZM2G091822 Male sterile gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 113518 ms26 TO:0000245 PMID:24112765 IMP T GRMZM2G091822 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 114025 rtcs1 TO:0001013 PMID:23843603 IMP T GRMZM2G092542 few or no secondary roots gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000943 PMID:21423772 IMP T GRMZM2G026930 Aleurone layer is colored gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000943 PMID:21423772 IMP T GRMZM2G026930 no color in aleurone gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000187 PMID:21423772 IMP T GRMZM2G026930 anthers are green gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000071 PMID:21423772 IMP T GRMZM2G026930 lack of anthocyanins in aleurone gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000707 PMID:21423772 IMP T GRMZM2G026930 The pericarp is brown gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000280 PMID:21423772 IMP T GRMZM2G026930 seedling dies gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12000 a1 TO:0000676 PMID:21423772 IMP T GRMZM2G026930 silks are green gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12006 a2 TO:0000943 PMID:21423772 IMP T GRMZM2G345717 Aleurone layer is colored gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12006 a2 TO:0000187 PMID:21423772 IMP T GRMZM2G345717 anthers are green gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12028 ae1 TO:0000587 PMID:21423772 IMP T GRMZM2G032628 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12028 ae1 TO:0000599 PMID:21423772 IMP T GRMZM2G032628 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12028 ae1 TO:0000718 PMID:21423772 IMP T GRMZM2G032628 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12029 afd1 TO:0000214 PMID:21423772 IMP T GRMZM2G059037 Anthers shriveled gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12029 afd1 TO:0000437 PMID:21423772 IMP T GRMZM2G059037 Male sterile gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12029 afd1 TO:0000245 PMID:21423772 IMP T GRMZM2G059037 Pollen absent or aborted. gene taxon:4577 20150527 Planteome:Ethan_Johnson !MaizeGDB 12048 an1 PMID:21423772 IMP T GRMZM2G081554 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 flower development trait TO:0000622 PMID:21423772 IMP T GRMZM2G081554 Ear florets are hermaphroditic; most easily observed in unfertilized ear. gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G081554 internode elongation reduced gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 leaf length TO:0000135 PMID:21423772 IMP T GRMZM2G081554 short leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G081554 broad leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G081554 leaf width excess gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 phyllotaxy TO:0006014 PMID:21423772 IMP T GRMZM2G081554 compact leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G081554 Dwarf gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G081554 The plant is shorter gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12048 an1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G081554 tassel branches few gene taxon:4577 20150527 Planteome:Ethan_Johnson -MaizeGDB 12065 b1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G172795 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G172795 anthocyanin pigmented sectors in aleurone gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G172795 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12065 b1 stem color TO:0000056 PMID:21423772 IMP T GRMZM2G172795 striped stems gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12065 b1 variegated leaf TO:0000069 PMID:21423772 IMP T GRMZM2G172795 striped leaves gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000622 PMID:21423772 IMP T GRMZM2G081554 Ear florets are hermaphroditic; most easily observed in unfertilized ear. gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000145 PMID:21423772 IMP T GRMZM2G081554 internode elongation reduced gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000135 PMID:21423772 IMP T GRMZM2G081554 short leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000370 PMID:21423772 IMP T GRMZM2G081554 broad leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000370 PMID:21423772 IMP T GRMZM2G081554 leaf width excess gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0006014 PMID:21423772 IMP T GRMZM2G081554 compact leaves gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000207 PMID:21423772 IMP T GRMZM2G081554 Dwarf gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000207 PMID:21423772 IMP T GRMZM2G081554 The plant is shorter gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12048 an1 TO:0000813 PMID:21423772 IMP T GRMZM2G081554 tassel branches few gene taxon:4577 20150527 Planteome:Ethan_Johnson +MaizeGDB 12065 b1 TO:0000943 PMID:21423772 IMP T GRMZM2G172795 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12065 b1 TO:0000071 PMID:21423772 IMP T GRMZM2G172795 anthocyanin pigmented sectors in aleurone gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12065 b1 TO:0000071 PMID:21423772 IMP T GRMZM2G172795 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12065 b1 TO:0000056 PMID:21423772 IMP T GRMZM2G172795 striped stems gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12065 b1 TO:0000069 PMID:21423772 IMP T GRMZM2G172795 striped leaves gene taxon:4577 20150616 Planteome:Ethan_Johnson !MaizeGDB 12070 bd1 PMID:21423772 IMP T GRMZM2G307119 pistils abort, no silks gene taxon:4577 20150529 Planteome:Ethan_Johnson !MaizeGDB 12070 bd1 PMID:21423772 IMP T GRMZM2G307119 silks absent gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12070 bd1 fascicled ear TO:0000715 PMID:21423772 IMP T GRMZM2G307119 ear is branched gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12077 bk2 leaf shattering TO:0000108 PMID:17932309 IMP T GRMZM2G109326 leaves shatter after moderate winds gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12077 bk2 plant structure anatomy and morphology trait TO:0000839 PMID:17932309 IMP T GRMZM2G109326 brittle plant parts after 4-leaf stage gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12070 bd1 TO:0000715 PMID:21423772 IMP T GRMZM2G307119 ear is branched gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12077 bk2 TO:0000108 PMID:17932309 IMP T GRMZM2G109326 leaves shatter after moderate winds gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12077 bk2 TO:0000839 PMID:17932309 IMP T GRMZM2G109326 brittle plant parts after 4-leaf stage gene taxon:4577 20150529 Planteome:Ethan_Johnson !MaizeGDB 12079 bm1 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of the sheath, midribs, and blades gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12079 bm1 cob color TO:0000924 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of cob gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12079 bm1 leaf midrib color TO:0000720 PMID:21423772 IMP T GRMZM5G844562 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12079 bm1 lignin content TO:0000731 PMID:21423772 IMP T GRMZM5G844562 The amount of lignin in the leaves is reduced gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12079 bm1 root color TO:0000065 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of roots gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12079 bm1 TO:0000924 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of cob gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12079 bm1 TO:0000720 PMID:21423772 IMP T GRMZM5G844562 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12079 bm1 TO:0000731 PMID:21423772 IMP T GRMZM5G844562 The amount of lignin in the leaves is reduced gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12079 bm1 TO:0000065 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of roots gene taxon:4577 20150529 Planteome:Ethan_Johnson !MaizeGDB 12081 bm3 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of the sheath, midribs, and blades gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12081 bm3 cob color TO:0000924 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of cob gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12081 bm3 leaf midrib color TO:0000720 PMID:21423772 IMP T AC196475.3_FG004 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12081 bm3 lignin content TO:0000731 PMID:21423772 IMP T AC196475.3_FG004 The amount of lignin in the leaves is reduced gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12081 bm3 root color TO:0000065 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of roots gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID:21423772 IMP T GRMZM2G144081 mature kernel brittle gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID:21423772 IMP T GRMZM2G144081 texture of endosperm is brittle gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G144081 endosperm is opaque gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 fruit shape TO:0002628 PMID:21423772 IMP T GRMZM2G144081 mature kernel angular gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G144081 endosperm collapsed gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G144081 mature kernel collapsed gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12081 bm3 TO:0000924 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of cob gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12081 bm3 TO:0000720 PMID:21423772 IMP T AC196475.3_FG004 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12081 bm3 TO:0000731 PMID:21423772 IMP T AC196475.3_FG004 The amount of lignin in the leaves is reduced gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12081 bm3 TO:0000065 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of roots gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0000713 PMID:21423772 IMP T GRMZM2G144081 mature kernel brittle gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0000713 PMID:21423772 IMP T GRMZM2G144081 texture of endosperm is brittle gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0000487 PMID:21423772 IMP T GRMZM2G144081 endosperm is opaque gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0002628 PMID:21423772 IMP T GRMZM2G144081 mature kernel angular gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0000100 PMID:21423772 IMP T GRMZM2G144081 endosperm collapsed gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12091 T1 TO:0000100 PMID:21423772 IMP T GRMZM2G144081 mature kernel collapsed gene taxon:4577 20150529 Planteome:Ethan_Johnson !MaizeGDB 12092 T2 PMID:25600571 IMP T GRMZM2G068506 No mRNA is produced from the T2 gene gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12098 bz1 aleurone layer color TO:0000943 PMID:25201957 IMP T GRMZM2G165390 Aleurone color is bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12098 bz1 fluorescence related trait TO:0012006 PMID:25201957 IMP T GRMZM2G165390 Shedding tassels viewed under UV light show bright yellow fluorescence in the anthers gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12098 bz1 plant color TO:0000708 PMID:25201957 IMP T GRMZM2G165390 Whole plant color can be bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12099 bz2 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G016241 Aleurone color is bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12099 bz2 plant color TO:0000708 PMID:21423772 IMP T GRMZM2G016241 Whole plant color can be bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 12101 c1 aleurone layer appearance TO:0000944 PMID:21423772 IMP T GRMZM2G005066 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12101 c1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G005066 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12102 c2 aleurone layer appearance TO:0000944 PMID:21423772 IMP T GRMZM2G422750 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 basal tiller number TO:0001004 PMID:21987797 IMP T GRMZM2G022489 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 basic vegetative phase TO:0000461 PMID:21987797 IMP T GRMZM2G022489 often vegetative leaves in the ear and tassle gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 ear length TO:0000431 PMID:21987797 IMP T GRMZM2G022489 highly reduced ears gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 leaf width TO:0000370 PMID:21987797 IMP T GRMZM2G022489 narrow leaves gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21987797 IMP T GRMZM2G022489 highly reduced tassel gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12115 cg1 tillering ability TO:0000329 PMID:21987797 IMP T GRMZM2G022489 extreme tillering gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12098 bz1 TO:0000943 PMID:25201957 IMP T GRMZM2G165390 Aleurone color is bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12098 bz1 TO:0012006 PMID:25201957 IMP T GRMZM2G165390 Shedding tassels viewed under UV light show bright yellow fluorescence in the anthers gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12098 bz1 TO:0000708 PMID:25201957 IMP T GRMZM2G165390 Whole plant color can be bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12099 bz2 TO:0000943 PMID:21423772 IMP T GRMZM2G016241 Aleurone color is bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12099 bz2 TO:0000708 PMID:21423772 IMP T GRMZM2G016241 Whole plant color can be bronze gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 12101 c1 TO:0000944 PMID:21423772 IMP T GRMZM2G005066 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12101 c1 TO:0000943 PMID:21423772 IMP T GRMZM2G005066 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12102 c2 TO:0000944 PMID:21423772 IMP T GRMZM2G422750 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0001004 PMID:21987797 IMP T GRMZM2G022489 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0000461 PMID:21987797 IMP T GRMZM2G022489 often vegetative leaves in the ear and tassle gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0000431 PMID:21987797 IMP T GRMZM2G022489 highly reduced ears gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0000370 PMID:21987797 IMP T GRMZM2G022489 narrow leaves gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0000788 PMID:21987797 IMP T GRMZM2G022489 highly reduced tassel gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12115 cg1 TO:0000329 PMID:21987797 IMP T GRMZM2G022489 extreme tillering gene taxon:4577 20150616 Planteome:Ethan_Johnson !MaizeGDB 12141 d3 PMID:25774204 IMP T GRMZM2G093195 andromonoecious gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12141 d3 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G093195 internode elongation reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12141 d3 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G093195 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12141 d3 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G093195 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12141 d3 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G093195 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12141 d3 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G093195 The plant is shorter gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12141 d3 TO:0000145 PMID:21423772 IMP T GRMZM2G093195 internode elongation reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12141 d3 TO:0000541 PMID:21423772 IMP T GRMZM2G093195 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12141 d3 TO:0002637 PMID:21423772 IMP T GRMZM2G093195 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12141 d3 TO:0000370 PMID:21423772 IMP T GRMZM2G093195 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12141 d3 TO:0000207 PMID:21423772 IMP T GRMZM2G093195 The plant is shorter gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12143 d8 PMID:21423772 IMP T GRMZM2G144744 Plant does not reposnd to giberellin gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12143 d8 PMID:21423772 IMP T GRMZM2G144744 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12143 d8 PMID:21423772 IMP T GRMZM2G144744 anthers in the ears gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 floret anatomy and morphology trait TO:0000274 PMID:21423772 IMP T GRMZM2G144744 Ear florets are hermaphroditic; most easily observed in unfertilized ear. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G144744 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G144744 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G144744 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G144744 leaf width excess gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G144744 Dwarf gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G144744 whole plant short gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G144744 tassel branches few gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 tassel inflorescence circumference TO:0000796 PMID:21423772 IMP T GRMZM2G144744 compact tassel gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12143 d8 tiller number TO:0000346 PMID:21423772 IMP T GRMZM2G144744 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000274 PMID:21423772 IMP T GRMZM2G144744 Ear florets are hermaphroditic; most easily observed in unfertilized ear. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000541 PMID:21423772 IMP T GRMZM2G144744 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0002637 PMID:21423772 IMP T GRMZM2G144744 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000370 PMID:21423772 IMP T GRMZM2G144744 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000370 PMID:21423772 IMP T GRMZM2G144744 leaf width excess gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000207 PMID:21423772 IMP T GRMZM2G144744 Dwarf gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000207 PMID:21423772 IMP T GRMZM2G144744 whole plant short gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000813 PMID:21423772 IMP T GRMZM2G144744 tassel branches few gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000796 PMID:21423772 IMP T GRMZM2G144744 compact tassel gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12143 d8 TO:0000346 PMID:21423772 IMP T GRMZM2G144744 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12144 d9 PMID:21423772 IMP T GRMZM2G024973 andromonoecious gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12144 d9 PMID:21423772 IMP T GRMZM2G024973 anthers in the ears gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12144 d9 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G024973 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12144 d9 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G024973 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12144 d9 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G024973 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12144 d9 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G024973 whole plant short gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12144 d9 tassel inflorescence circumference TO:0000796 PMID:21423772 IMP T GRMZM2G024973 compact tassel gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 chalky endosperm TO:0000266 PMID:21423772 IMP T GRMZM2G321753 endosperm has a soft, chalk-like texture gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 endosperm anatomy and morphology trait TO:0000575 PMID:21423772 IMP T GRMZM2G321753 abnormal endosperm gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G321753 endosperm reduced yellow color gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G321753 endosperm opaque appearance gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G321753 floury kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 fruit color TO:0002617 PMID:21423772 IMP T GRMZM2G321753 colorless kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 fruit shape TO:0002628 PMID:21423772 IMP T GRMZM2G321753 round kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 fruit size TO:0002625 PMID:21423772 IMP T GRMZM2G321753 Generally a reduced size kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12148 dek1 grain shape TO:0002730 PMID:21423772 IMP T GRMZM2G321753 thin kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 12197 du1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G141399 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12197 du1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G141399 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12197 du1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G141399 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 1219936 spi1 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G025222 The number of kernals on the cob is reduced gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 1219936 spi1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G025222 number of tassel spikelets greatly reduced gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12144 d9 TO:0000541 PMID:21423772 IMP T GRMZM2G024973 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12144 d9 TO:0002637 PMID:21423772 IMP T GRMZM2G024973 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12144 d9 TO:0000370 PMID:21423772 IMP T GRMZM2G024973 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12144 d9 TO:0000207 PMID:21423772 IMP T GRMZM2G024973 whole plant short gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12144 d9 TO:0000796 PMID:21423772 IMP T GRMZM2G024973 compact tassel gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0000266 PMID:21423772 IMP T GRMZM2G321753 endosperm has a soft, chalk-like texture gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0000575 PMID:21423772 IMP T GRMZM2G321753 abnormal endosperm gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0000487 PMID:21423772 IMP T GRMZM2G321753 endosperm reduced yellow color gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0000104 PMID:21423772 IMP T GRMZM2G321753 endosperm opaque appearance gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0000104 PMID:21423772 IMP T GRMZM2G321753 floury kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0002617 PMID:21423772 IMP T GRMZM2G321753 colorless kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0002628 PMID:21423772 IMP T GRMZM2G321753 round kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0002625 PMID:21423772 IMP T GRMZM2G321753 Generally a reduced size kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12148 dek1 TO:0002730 PMID:21423772 IMP T GRMZM2G321753 thin kernel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 12197 du1 TO:0000599 PMID:21423772 IMP T GRMZM2G141399 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12197 du1 TO:0000099 PMID:21423772 IMP T GRMZM2G141399 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12197 du1 TO:0000718 PMID:21423772 IMP T GRMZM2G141399 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 1219936 spi1 TO:0000937 PMID:21423772 IMP T GRMZM2G025222 The number of kernals on the cob is reduced gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 1219936 spi1 TO:0000813 PMID:21423772 IMP T GRMZM2G025222 number of tassel spikelets greatly reduced gene taxon:4577 20150619 Planteome:Austin_Meier !MaizeGDB 12218 et1 PMID:21423772 IMP T GRMZM2G157574 surface of kernel strewn with small pits or indentations gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12218 et1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G157574 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12218 et1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G157574 interior floury gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12218 et1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G157574 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12218 et1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G157574 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12225 fl2 chalky endosperm TO:0000266 PMID:21423772 IMP T GRMZM2G397687 endosperm has a soft, chalk-like texture gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12225 fl2 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G397687 endosperm reduced yellow color gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12225 fl2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm is opaque gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12225 fl2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm opaque appearance gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are less membranous than normal. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are smaller than normal. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12229 g2 leaf sheath color TO:0002724 PMID:25725436 IMP T GRMZM2G087804 distinct yellow cast on sheath gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12229 g2 plant color TO:0000708 PMID:25725436 IMP T GRMZM2G087804 plant with distinct yellow cast gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12229 g2 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G087804 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12242 gl1 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G114642 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12242 gl1 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G114642 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12247 gl15 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G160730 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12247 gl15 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G160730 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12252 gl2 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G098239 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12252 gl2 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G098239 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12263 gl8 inflorescence waxiness TO:0000787 PMID:21423772 IMP T AC205703.4_FG006 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12263 gl8 leaf gloss TO:0000709 PMID:21423772 IMP T AC205703.4_FG006 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12290 hcf106 fluorescence related trait TO:0012006 PMID:25725436 IMP T GRMZM5G898735 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Cochliobolus carbonum gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Colletotrichum graminicola gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12328 hm2 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM2G086773 resistant to Cochliobolus carbonum gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 1232891 wtf1 leaf color TO:0000326 PMID:25725436 IMP T GRMZM2G403797 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 1232893 why1 leaf color TO:0000326 PMID:25599833 IMP T GRMZM2G155662 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 1232899 ppr5 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G025409 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12218 et1 TO:0000599 PMID:21423772 IMP T GRMZM2G157574 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12218 et1 TO:0000104 PMID:21423772 IMP T GRMZM2G157574 interior floury gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12218 et1 TO:0000099 PMID:21423772 IMP T GRMZM2G157574 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12218 et1 TO:0000718 PMID:21423772 IMP T GRMZM2G157574 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12225 fl2 TO:0000266 PMID:21423772 IMP T GRMZM2G397687 endosperm has a soft, chalk-like texture gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12225 fl2 TO:0000487 PMID:21423772 IMP T GRMZM2G397687 endosperm reduced yellow color gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12225 fl2 TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm is opaque gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12225 fl2 TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm opaque appearance gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12229 g2 TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are less membranous than normal. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12229 g2 TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are smaller than normal. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12229 g2 TO:0002724 PMID:25725436 IMP T GRMZM2G087804 distinct yellow cast on sheath gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12229 g2 TO:0000708 PMID:25725436 IMP T GRMZM2G087804 plant with distinct yellow cast gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12229 g2 TO:0000069 PMID:25725436 IMP T GRMZM2G087804 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12242 gl1 TO:0000787 PMID:21423772 IMP T GRMZM2G114642 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12242 gl1 TO:0000709 PMID:21423772 IMP T GRMZM2G114642 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12247 gl15 TO:0000787 PMID:21423772 IMP T GRMZM2G160730 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12247 gl15 TO:0000709 PMID:21423772 IMP T GRMZM2G160730 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12252 gl2 TO:0000787 PMID:21423772 IMP T GRMZM2G098239 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12252 gl2 TO:0000709 PMID:21423772 IMP T GRMZM2G098239 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12263 gl8 TO:0000787 PMID:21423772 IMP T AC205703.4_FG006 Cuticular wax on epidermis of juvenile leaves is altered gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12263 gl8 TO:0000709 PMID:21423772 IMP T AC205703.4_FG006 Juvenile leaves have a glossy surface gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12290 hcf106 TO:0012006 PMID:25725436 IMP T GRMZM5G898735 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12327 hm1 TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Cochliobolus carbonum gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12327 hm1 TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Colletotrichum graminicola gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12328 hm2 TO:0000439 PMID:24847713 IMP T GRMZM2G086773 resistant to Cochliobolus carbonum gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 1232891 wtf1 TO:0000326 PMID:25725436 IMP T GRMZM2G403797 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 1232893 why1 TO:0000326 PMID:25599833 IMP T GRMZM2G155662 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 1232899 ppr5 TO:0000326 PMID:21423772 IMP T GRMZM2G025409 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 1233612 emp4 PMID:21423772 IMP T GRMZM2G092198 loose pericarp gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 1233612 emp4 PMID:21423772 IMP T GRMZM2G092198 small embryo gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 1233612 emp4 fruit anatomy and morphology trait TO:0002629 PMID:21423772 IMP T GRMZM2G092198 kernel is angular gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G092198 endosperm much reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G092198 kernel is collapsed gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 1233612 emp4 TO:0002629 PMID:21423772 IMP T GRMZM2G092198 kernel is angular gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 1233612 emp4 TO:0000100 PMID:21423772 IMP T GRMZM2G092198 endosperm much reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 1233612 emp4 TO:0000100 PMID:21423772 IMP T GRMZM2G092198 kernel is collapsed gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12340 ig1 PMID:21423772 IMP T GRMZM2G118250 aborted kernel gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12340 ig1 PMID:21423772 IMP T GRMZM2G118250 kernel with loose pericarp gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12340 ig1 fertility related trait TO:0000420 PMID:21423772 IMP T GRMZM2G118250 Male flowers have reduced fertility gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12340 ig1 fruit anatomy and morphology trait TO:0002629 PMID:21423772 IMP T GRMZM2G118250 kernel with loose pericarp gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12340 ig1 seed size TO:0000391 PMID:21423772 IMP T GRMZM2G118250 kernal smaller in size gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12341 ij1 leaf color TO:0000326 PMID:25725436 IMP T GRMZM2G004583 Seedling leaves are white. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12341 ij1 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G004583 Leaf is mostly white, with short, thin, green, longitudinal stripes (in the direction of the lateral veins), gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12340 ig1 TO:0000420 PMID:21423772 IMP T GRMZM2G118250 Male flowers have reduced fertility gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12340 ig1 TO:0002629 PMID:21423772 IMP T GRMZM2G118250 kernel with loose pericarp gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12340 ig1 TO:0000391 PMID:21423772 IMP T GRMZM2G118250 kernal smaller in size gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12341 ij1 TO:0000326 PMID:25725436 IMP T GRMZM2G004583 Seedling leaves are white. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12341 ij1 TO:0000069 PMID:25725436 IMP T GRMZM2G004583 Leaf is mostly white, with short, thin, green, longitudinal stripes (in the direction of the lateral veins), gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 12352 kn1 PMID:24218490 IMP T GRMZM2G017087 The number of ovules that develop into a seed is reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12352 kn1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G017087 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12352 kn1 spikelet number TO:0000456 PMID:24218490 IMP T GRMZM2G017087 number of tassel spikelets greatly reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12352 kn1 sterility or fertility trait TO:0000392 PMID:24218490 IMP T GRMZM2G017087 pollen nonfunctional gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12386 lg1 auricleless TO:0000226 PMID:25516601 IMP T GRMZM2G036297 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12386 lg1 leaf attitude TO:0000824 PMID:25516601 IMP T GRMZM2G036297 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12387 lg2 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G060216 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12387 lg2 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G060216 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12352 kn1 TO:0000820 PMID:24218490 IMP T GRMZM2G017087 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12352 kn1 TO:0000456 PMID:24218490 IMP T GRMZM2G017087 number of tassel spikelets greatly reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12352 kn1 TO:0000392 PMID:24218490 IMP T GRMZM2G017087 pollen nonfunctional gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12386 lg1 TO:0000226 PMID:25516601 IMP T GRMZM2G036297 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12386 lg1 TO:0000824 PMID:25516601 IMP T GRMZM2G036297 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12387 lg2 TO:0000226 PMID:21423772 IMP T GRMZM2G060216 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12387 lg2 TO:0000824 PMID:21423772 IMP T GRMZM2G060216 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12388 lg3 PMID:21423772 IMP T GRMZM2G087741 more ligule gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12388 lg3 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G087741 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12388 lg3 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G087741 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12389 lg4 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G094241 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12389 lg4 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G094241 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12388 lg3 TO:0000226 PMID:21423772 IMP T GRMZM2G087741 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12388 lg3 TO:0000824 PMID:21423772 IMP T GRMZM2G087741 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12389 lg4 TO:0000226 PMID:21423772 IMP T GRMZM2G094241 auricle of the leaf missing gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12389 lg4 TO:0000824 PMID:21423772 IMP T GRMZM2G094241 leaves upright gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12391 lls1 PMID:21423772 IMP T GRMZM2G339563 Leaves have elliptical lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12391 lls1 PMID:21423772 IMP T GRMZM2G339563 Leaves have round lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12391 lls1 PMID:21423772 IMP T GRMZM2G339563 Premature plant death gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12391 lls1 chlorophyll content TO:0000495 PMID:21423772 IMP T GRMZM2G339563 Chlorotic leaf lesion gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12391 lls1 leaf necrosis TO:0000652 PMID:21423772 IMP T GRMZM2G339563 necrotic leaf lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12391 lls1 leaf senescence TO:0000249 PMID:21423772 IMP T GRMZM2G339563 Premature leaf senescence gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12469 na1 anatomy and morphology trait TO:0000017 PMID:22106275 IMP T JN020030.1 erect plant gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12469 na1 plant growth hormone sensitivity TO:0000401 PMID:22106275 IMP T JN020030.1 no response to gibberellins gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12469 na1 plant height TO:0000207 PMID:22106275 IMP T JN020030.1 short plant gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12495 o2 glutinous endosperm TO:0000098 PMID:23586588 IMP T GRMZM2G015534 endosperm is opaque gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12515 oy1 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G419806 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12517 p1 style color TO:0000676 PMID:25250036 IMP T GRMZM2G084799 Silks brown sooner than normal gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12391 lls1 TO:0000495 PMID:21423772 IMP T GRMZM2G339563 Chlorotic leaf lesion gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12391 lls1 TO:0000652 PMID:21423772 IMP T GRMZM2G339563 necrotic leaf lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12391 lls1 TO:0000249 PMID:21423772 IMP T GRMZM2G339563 Premature leaf senescence gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12469 na1 TO:0000017 PMID:22106275 IMP T JN020030.1 erect plant gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12469 na1 TO:0000401 PMID:22106275 IMP T JN020030.1 no response to gibberellins gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12469 na1 TO:0000207 PMID:22106275 IMP T JN020030.1 short plant gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12495 o2 TO:0000098 PMID:23586588 IMP T GRMZM2G015534 endosperm is opaque gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12515 oy1 TO:0000069 PMID:25725436 IMP T GRMZM2G419806 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12517 p1 TO:0000676 PMID:25250036 IMP T GRMZM2G084799 Silks brown sooner than normal gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12553 pl1 PMID:21423772 IMP T GRMZM2G701063 striped stems gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G701063 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12553 pl1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12553 pl1 variegated leaf TO:0000069 PMID:21423772 IMP T GRMZM2G701063 striped leaves gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12562 ps1 cotyledon TO:0000750 PMID:21423772 IMP T GRMZM5G849107 pink coloration of scutellum gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12562 ps1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM5G849107 pink coloration of endosperm gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12562 ps1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM5G849107 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12562 ps1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM5G849107 viviparous embryo gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12573 tan1 cell cycle trait TO:0000728 PMID:21423772 IMP T GRMZM2G039113 irregular cell division placement in leaf epidermis (results in irregularly shaped cells) gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12573 tan1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G039113 leaves short gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12573 tan1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G039113 plant short gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 aleurone layer appearance TO:0000944 PMID:21423772 IMP T GRMZM5G822829 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 anthers are green gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 pale pink to red anthers gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 red anthers gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Strong anthocyanin on leaf blade after 4-6 leaf stage gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12576 r1 pericarp color TO:0000707 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 12577 ra1 spikelet anatomy and morphology trait TO:0000657 PMID:21423772 IMP T GRMZM2G003927 abnormality in spikelet gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12578 ra2 spikelet anatomy and morphology trait TO:0000657 PMID:21423772 IMP T AC233943.1_FG002 abnormality in spikelet gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12579 ra3 fascicled ear TO:0000715 PMID:21423772 IMP T GRMZM2G014729 ear is branched gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12595 rf2 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G058675 Anthers shriveled gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12595 rf2 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G058675 Male sterile gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12595 rf2 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G058675 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12553 pl1 TO:0000071 PMID:21423772 IMP T GRMZM2G701063 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12553 pl1 TO:0000071 PMID:21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12553 pl1 TO:0000487 PMID:21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12553 pl1 TO:0000069 PMID:21423772 IMP T GRMZM2G701063 striped leaves gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12562 ps1 TO:0000750 PMID:21423772 IMP T GRMZM5G849107 pink coloration of scutellum gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12562 ps1 TO:0000487 PMID:21423772 IMP T GRMZM5G849107 pink coloration of endosperm gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12562 ps1 TO:0000326 PMID:21423772 IMP T GRMZM5G849107 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12562 ps1 TO:0000619 PMID:21423772 IMP T GRMZM5G849107 viviparous embryo gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12573 tan1 TO:0000728 PMID:21423772 IMP T GRMZM2G039113 irregular cell division placement in leaf epidermis (results in irregularly shaped cells) gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12573 tan1 TO:0000541 PMID:21423772 IMP T GRMZM2G039113 leaves short gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12573 tan1 TO:0000207 PMID:21423772 IMP T GRMZM2G039113 plant short gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000944 PMID:21423772 IMP T GRMZM5G822829 aleurone layer mottled gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000187 PMID:21423772 IMP T GRMZM5G822829 anthers are green gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000187 PMID:21423772 IMP T GRMZM5G822829 pale pink to red anthers gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000187 PMID:21423772 IMP T GRMZM5G822829 red anthers gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Strong anthocyanin on leaf blade after 4-6 leaf stage gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12576 r1 TO:0000707 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 12577 ra1 TO:0000657 PMID:21423772 IMP T GRMZM2G003927 abnormality in spikelet gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12578 ra2 TO:0000657 PMID:21423772 IMP T AC233943.1_FG002 abnormality in spikelet gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12579 ra3 TO:0000715 PMID:21423772 IMP T GRMZM2G014729 ear is branched gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12595 rf2 TO:0000214 PMID:21423772 IMP T GRMZM2G058675 Anthers shriveled gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12595 rf2 TO:0000437 PMID:21423772 IMP T GRMZM2G058675 Male sterile gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12595 rf2 TO:0000245 PMID:21423772 IMP T GRMZM2G058675 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 12602 rgd1 PMID:25774204 IMP T GRMZM2G020187 leaf blade absent gene taxon:4577 20150619 Planteome:Austin_Meier !MaizeGDB 12602 rgd1 PMID:21423772 IMP T GRMZM2G020187 difficulty emerging gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12602 rgd1 leaf shape TO:0000492 PMID:21423772 IMP T GRMZM2G020187 seedling leaves divided gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves narrow gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves thread-like gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12616 rs1 leaf sheath anatomy and morphology trait TO:0000835 PMID:24218490 IMP T GRMZM2G028041 leaf sheath is rough gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12616 rs1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 12617 rs2 leaf sheath anatomy and morphology trait TO:0000835 PMID:21423772 IMP T GRMZM2G403620 leaf sheath is rough gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12617 rs2 ligule anatomy and morphology trait TO:0002748 PMID:21423772 IMP T GRMZM2G403620 abnormality of ligule gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12664 su1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G138060 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12664 su1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G138060 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12664 su1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G138060 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 12665 su2 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G348551 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12665 su2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G348551 endosperm is opaque gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12665 su2 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G348551 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12665 su2 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G348551 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12671 tb1 tiller number TO:0000346 PMID:25909039 IMP T AC233950.1_FG002 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12673 te1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G085113 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12602 rgd1 TO:0000492 PMID:21423772 IMP T GRMZM2G020187 seedling leaves divided gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12602 rgd1 TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves narrow gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12602 rgd1 TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves thread-like gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12609 rp1 TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12609 rp1 TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12609 rp1 TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12616 rs1 TO:0000835 PMID:24218490 IMP T GRMZM2G028041 leaf sheath is rough gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12616 rs1 TO:0000820 PMID:24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 12617 rs2 TO:0000835 PMID:21423772 IMP T GRMZM2G403620 leaf sheath is rough gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12617 rs2 TO:0002748 PMID:21423772 IMP T GRMZM2G403620 abnormality of ligule gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12664 su1 TO:0000599 PMID:21423772 IMP T GRMZM2G138060 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12664 su1 TO:0000099 PMID:21423772 IMP T GRMZM2G138060 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12664 su1 TO:0000718 PMID:21423772 IMP T GRMZM2G138060 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 12665 su2 TO:0000599 PMID:21423772 IMP T GRMZM2G348551 starch debranching enzyme I absent in developing endosperm gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12665 su2 TO:0000098 PMID:21423772 IMP T GRMZM2G348551 endosperm is opaque gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12665 su2 TO:0000099 PMID:21423772 IMP T GRMZM2G348551 kernel is sweet at milk stage; typical of su1 gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12665 su2 TO:0000718 PMID:21423772 IMP T GRMZM2G348551 kernel is wrinkled, hard and translucent when dry gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12671 tb1 TO:0000346 PMID:25909039 IMP T AC233950.1_FG002 Plant produces many lateral branches (tillers) at its base. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12673 te1 TO:0000788 PMID:21423772 IMP T GRMZM2G085113 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12690 ts1 PMID:21423772 IMP T GRMZM2G104843 seeds in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12690 ts1 PMID:21423772 IMP T GRMZM2G104843 silks in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12690 ts1 floret anatomy and morphology trait TO:0000274 PMID:21423772 IMP T GRMZM2G104843 defective floret gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12690 ts1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G104843 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12690 ts1 TO:0000274 PMID:21423772 IMP T GRMZM2G104843 defective floret gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12690 ts1 TO:0000788 PMID:21423772 IMP T GRMZM2G104843 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12691 ts2 PMID:21423772 IMP T GRMZM2G455809 seeds in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12691 ts2 PMID:21423772 IMP T GRMZM2G455809 silks in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12691 ts2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G455809 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12691 ts2 TO:0000788 PMID:21423772 IMP T GRMZM2G455809 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12692 ts4 PMID:21423772 IMP T GRMZM5G803935 seeds in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12692 ts4 PMID:21423772 IMP T GRMZM5G803935 silks in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12692 ts4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G803935 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12692 ts4 TO:0000788 PMID:21423772 IMP T GRMZM5G803935 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12694 ts6 PMID:21423772 IMP T GRMZM5G862109 seeds in tassel gene taxon:4577 20150622 ! !MaizeGDB 12694 ts6 PMID:21423772 IMP T GRMZM5G862109 silks in tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12694 ts6 embryo development trait TO:0000620 PMID:21423772 IMP T GRMZM5G862109 The embryo develops on the wrong side of the kernel gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12694 ts6 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G862109 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12694 ts6 TO:0000620 PMID:21423772 IMP T GRMZM5G862109 The embryo develops on the wrong side of the kernel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12694 ts6 TO:0000788 PMID:21423772 IMP T GRMZM5G862109 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 12696 tu1 PMID:24980907 IMP T NM_001111678.1 kernels completely enclosed in long glumes gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes coarse gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes large gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12731 vp1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G133398 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12733 vp5 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G410515 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12733 vp5 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G410515 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12735 vp8 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G010353 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in endosperm. gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in pollen. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12696 tu1 TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes coarse gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12696 tu1 TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes large gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12731 vp1 TO:0000619 PMID:21423772 IMP T GRMZM2G133398 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12733 vp5 TO:0000326 PMID:21423772 IMP T GRMZM2G410515 Seedling leaves are white. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12733 vp5 TO:0000619 PMID:21423772 IMP T GRMZM2G410515 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12735 vp8 TO:0000619 PMID:21423772 IMP T GRMZM2G010353 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12768 wx1 TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in endosperm. gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 12768 wx1 TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in pollen. gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 133880 mop1 PMID:24786611 IMP T GRMZM2G042443 Reduction of gene silencing gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 133880 mop1 PMID:24786611 IMP T GRMZM2G042443 reduction of small RNAs gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 223331 les22 variegated leaf necrosis TO:0000070 PMID:21423772 IMP T GRMZM2G044074 necrotic or chlorotic lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 2365883 rel2 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G042992 Ear with few kernels if any gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 223331 les22 TO:0000070 PMID:21423772 IMP T GRMZM2G044074 necrotic or chlorotic lesions gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 2365883 rel2 TO:0000937 PMID:21423772 IMP T GRMZM2G042992 Ear with few kernels if any gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 25017 cr4 PMID:21423772 IMP T GRMZM2G051637 seedling which has an irregular shape gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 aleurone layer appearance TO:0000944 PMID:21423772 IMP T GRMZM2G051637 irregular-shaped patches of color and non-color in the aleurone tissue with distinct borders gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 leaf shape TO:0000492 PMID:21423772 IMP T GRMZM2G051637 leaves crinkled gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G051637 leaves broad gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G051637 plant short gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 portion of plant tissue anatomy and morphology trait TO:0000843 PMID:21423772 IMP T GRMZM2G051637 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25017 cr4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G051637 compact tassel gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25058 dsc1 pericarp anatomy and morphology trait TO:0000945 PMID:21423772 IMP T chr4:47715993 kernel surface opaque gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 25058 dsc1 pericarp texture TO:0002623 PMID:21423772 IMP T chr4:47715993 surface of kernel covered with many small irregularities giving it a rough texture gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 25058 dsc1 wrinkled seed TO:0000718 PMID:21423772 IMP T chr4:47715993 kernel surface like crumpled paper gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000944 PMID:21423772 IMP T GRMZM2G051637 irregular-shaped patches of color and non-color in the aleurone tissue with distinct borders gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000492 PMID:21423772 IMP T GRMZM2G051637 leaves crinkled gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000370 PMID:21423772 IMP T GRMZM2G051637 leaves broad gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000207 PMID:21423772 IMP T GRMZM2G051637 plant short gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000843 PMID:21423772 IMP T GRMZM2G051637 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25017 cr4 TO:0000788 PMID:21423772 IMP T GRMZM2G051637 compact tassel gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25058 dsc1 TO:0000945 PMID:21423772 IMP T chr4:47715993 kernel surface opaque gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 25058 dsc1 TO:0002623 PMID:21423772 IMP T chr4:47715993 surface of kernel covered with many small irregularities giving it a rough texture gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 25058 dsc1 TO:0000718 PMID:21423772 IMP T chr4:47715993 kernel surface like crumpled paper gene taxon:4577 20150617 Planteome:Ethan_Johnson !MaizeGDB 256276 dwf1 PMID:21423772 IMP T GRMZM2G057000 andromonoecious gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 256276 dwf1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G057000 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 256276 dwf1 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G057000 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 256276 dwf1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G057000 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 25995 crp1 seedling cotyledon color TO:0000750 PMID:21423772 IMP T GRMZM2G083950 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 25995 crp1 seedling growth and development trait TO:0000949 PMID:25774204 IMP T GRMZM2G083950 seedling dies after endosperm is used up gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 256276 dwf1 TO:0000541 PMID:21423772 IMP T GRMZM2G057000 short leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 256276 dwf1 TO:0002637 PMID:21423772 IMP T GRMZM2G057000 compact leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 256276 dwf1 TO:0000370 PMID:21423772 IMP T GRMZM2G057000 broad leaves gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 25995 crp1 TO:0000750 PMID:21423772 IMP T GRMZM2G083950 seedling leaves red fluorescence under long-wave uv gene taxon:4577 20150616 Planteome:Ethan_Johnson +MaizeGDB 25995 crp1 TO:0000949 PMID:25774204 IMP T GRMZM2G083950 seedling dies after endosperm is used up gene taxon:4577 20150616 Planteome:Ethan_Johnson !MaizeGDB 274903 dcd1 PMID:21423772 IMP T GRMZM2G083459 stomata abnormal gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 274903 dcd1 mitotic cell cycle trait TO:0000730 PMID:21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 cork cells abnormal gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 silica cells abnormal gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 30011 rld1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 30011 rld1 leaf rolling TO:0000085 PMID:21423772 IMP T GRMZM2G109987 leaves are rolled gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 274903 dcd1 TO:0000730 PMID:21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 274903 dcd1 TO:0002682 PMID:21423772 IMP T GRMZM2G083459 cork cells abnormal gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 274903 dcd1 TO:0002682 PMID:21423772 IMP T GRMZM2G083459 silica cells abnormal gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 30011 rld1 TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 30011 rld1 TO:0000085 PMID:21423772 IMP T GRMZM2G109987 leaves are rolled gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 30023 vp10 PMID:21423772 IMP T GRMZM2G067176 seedling leaves stuck together gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 30023 vp10 PMID:21423772 IMP T GRMZM2G067176 tassels stuck together gene taxon:4577 20150622 !! !MaizeGDB 30023 vp10 PMID:21423772 IMP T GRMZM2G067176 top leaves stuck together gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 30023 vp10 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G067176 Aleurone layer is colored gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 30023 vp10 seedling vigor TO:0000280 PMID:21423772 IMP T GRMZM2G067176 seedling dies after endosperm is used up gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 30023 vp10 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G067176 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 30023 vp10 TO:0000943 PMID:21423772 IMP T GRMZM2G067176 Aleurone layer is colored gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 30023 vp10 TO:0000280 PMID:21423772 IMP T GRMZM2G067176 seedling dies after endosperm is used up gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 30023 vp10 TO:0000619 PMID:21423772 IMP T GRMZM2G067176 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 308904 fea2 PMID:23377180 IMP T GRMZM2G104925 Ear tip flattened gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 308904 fea2 ear diameter TO:0000433 PMID:23377180 IMP T GRMZM2G104925 Ear broadened gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 308904 fea2 fascicled ear TO:0000715 PMID:23377180 IMP T GRMZM2G104925 Ear meristem overproliferation gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 308904 fea2 kernel row number per ear TO:0000687 PMID:23377180 IMP T GRMZM2G104925 increase in the number of rows of seeds on the ear; ear floret numbers increased gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 41310 zfl2 inflorescence development trait TO:0000621 PMID:24381105 IMP T GRMZM2G180190 defective ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 41310 zfl2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:24381105 IMP T GRMZM2G180190 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 308904 fea2 TO:0000433 PMID:23377180 IMP T GRMZM2G104925 Ear broadened gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 308904 fea2 TO:0000715 PMID:23377180 IMP T GRMZM2G104925 Ear meristem overproliferation gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 308904 fea2 TO:0000687 PMID:23377180 IMP T GRMZM2G104925 increase in the number of rows of seeds on the ear; ear floret numbers increased gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 41310 zfl2 TO:0000621 PMID:24381105 IMP T GRMZM2G180190 defective ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 41310 zfl2 TO:0000788 PMID:24381105 IMP T GRMZM2G180190 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 41343 bde1 PMID:21423772 IMP T GRMZM2G160565 multiple silks per floret in ear gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 41343 bde1 inflorescence anatomy and morphology trait TO:0000373 PMID:21423772 IMP T GRMZM2G160565 proliferation of irregular growth on ear gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 41343 bde1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G160565 silks in the tassel gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 415181 sbe3 leaf senescence duration TO:0012012 PMID:21508184 IMP T GRMZM2G073054 leaves senesc earleir than normal sibs gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 41343 bde1 TO:0000373 PMID:21423772 IMP T GRMZM2G160565 proliferation of irregular growth on ear gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 41343 bde1 TO:0000788 PMID:21423772 IMP T GRMZM2G160565 silks in the tassel gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 415181 sbe3 TO:0012012 PMID:21508184 IMP T GRMZM2G073054 leaves senesc earleir than normal sibs gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 60438 bif2 PMID:21423772 IMP T GRMZM2G171822 ear meristem absent gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 60438 bif2 inflorescence branching TO:0000050 PMID:21423772 IMP T GRMZM2G171822 Inflorescence branches absent gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 60468 dlf1 flowering time trait TO:0002616 PMID:21423772 IMP T GRMZM2G067921 mature plant 7-10 days later in flowering than normal gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 60468 dlf1 node number TO:0000634 PMID:21423772 IMP T GRMZM2G067921 4-6 more nodes and leaves than normal. gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 60468 dlf1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G321753 mature plant 2-3 feet taller than normal. gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 60513 rth1 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G099056 root hairs fail to elongate gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 60513 rth1 root shape TO:0002710 PMID:21423772 IMP T GRMZM2G099056 general term to describe abnormality in root system gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hair decreased length gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hairs fail to elongate gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 60537 tsh1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G325850 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 60438 bif2 TO:0000050 PMID:21423772 IMP T GRMZM2G171822 Inflorescence branches absent gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 60468 dlf1 TO:0002616 PMID:21423772 IMP T GRMZM2G067921 mature plant 7-10 days later in flowering than normal gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 60468 dlf1 TO:0000634 PMID:21423772 IMP T GRMZM2G067921 4-6 more nodes and leaves than normal. gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 60468 dlf1 TO:0000207 PMID:21423772 IMP T GRMZM2G321753 mature plant 2-3 feet taller than normal. gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 60513 rth1 TO:0002665 PMID:21423772 IMP T GRMZM2G099056 root hairs fail to elongate gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 60513 rth1 TO:0002710 PMID:21423772 IMP T GRMZM2G099056 general term to describe abnormality in root system gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 60515 rth3 TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hair decreased length gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 60515 rth3 TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hairs fail to elongate gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 60537 tsh1 TO:0000788 PMID:21423772 IMP T GRMZM2G325850 abnormality of the tassel gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 61077 ns1 PMID:21423772 IMP T GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 61077 ns1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G069028 internode elongation reduced gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 61077 ns1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G069028 leaves are very narrow along their whole length gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 61077 ns1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G069028 Plants are reduced in height gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID:21423772 IMP T GRMZM2G069028 The margin domain of both blade and sheath is missing gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 61077 ns1 TO:0000145 PMID:21423772 IMP T GRMZM2G069028 internode elongation reduced gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 61077 ns1 TO:0000370 PMID:21423772 IMP T GRMZM2G069028 leaves are very narrow along their whole length gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 61077 ns1 TO:0000207 PMID:21423772 IMP T GRMZM2G069028 Plants are reduced in height gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 61077 ns1 TO:0000419 PMID:21423772 IMP T GRMZM2G069028 The margin domain of both blade and sheath is missing gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 61653 si1 PMID:21423772 IMP T GRMZM2G139073 multiple silks per floret in ear gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 61653 si1 PMID:21423772 IMP T GRMZM2G139073 seeds in tassel gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 61653 si1 PMID:21423772 IMP T GRMZM2G139073 silks in tassel gene taxon:4577 20150619 Planteome:Ethan_Johnson @@ -319,26 +319,26 @@ MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID:21 !MaizeGDB 64424 gn1 PMID:21423772 IMP T GRMZM2G452178 seedling distorted gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 64424 gn1 PMID:21423772 IMP T GRMZM2G452178 seedling twisted gene taxon:4577 20150618 Planteome:Ethan_Johnson !MaizeGDB 64424 gn1 PMID:21423772 IMP T GRMZM2G452178 silks in the tassel gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 64424 gn1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G452178 internode elongation reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 64424 gn1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G452178 The plant is shorter gene taxon:4577 20150618 Planteome:Ethan_Johnson -MaizeGDB 854977 brk1 plant cell anatomy and morphology trait TO:0002683 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell lobes blocked gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape abnormal gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape rectangular gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Stomatal subsidiary cells are abnormal gene taxon:4577 20150529 Planteome:Ethan_Johnson -MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing anthers gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing ovules. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 86035 mac1 sterility related trait TO:0000485 PMID:25713378 IMP T GRMZM2G027522 Male and female sterile. gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 870601 sgo1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G074082 Anthers shriveled gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 870601 sgo1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G074082 Male sterile gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 870601 sgo1 pollen abortion type TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Austin_Meier -MaizeGDB 871231 pac1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 886495 sal1 aleurone layer anatomy and morphology trait TO:0000942 PMID:21423772 IMP T GRMZM2G117935 multiple cell layers in the aleurone tissue gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 64424 gn1 TO:0000145 PMID:21423772 IMP T GRMZM2G452178 internode elongation reduced gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 64424 gn1 TO:0000207 PMID:21423772 IMP T GRMZM2G452178 The plant is shorter gene taxon:4577 20150618 Planteome:Ethan_Johnson +MaizeGDB 854977 brk1 TO:0002683 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell lobes blocked gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 854977 brk1 TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape abnormal gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 854977 brk1 TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape rectangular gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 854977 brk1 TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Stomatal subsidiary cells are abnormal gene taxon:4577 20150529 Planteome:Ethan_Johnson +MaizeGDB 86035 mac1 TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing anthers gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 86035 mac1 TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing ovules. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 86035 mac1 TO:0000485 PMID:25713378 IMP T GRMZM2G027522 Male and female sterile. gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 870601 sgo1 TO:0000214 PMID:21423772 IMP T GRMZM2G074082 Anthers shriveled gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 870601 sgo1 TO:0000437 PMID:21423772 IMP T GRMZM2G074082 Male sterile gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 870601 sgo1 TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 871231 pac1 TO:0000487 PMID:21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 886495 sal1 TO:0000942 PMID:21423772 IMP T GRMZM2G117935 multiple cell layers in the aleurone tissue gene taxon:4577 20150622 Planteome:Ethan_Johnson !MaizeGDB 9017732 cf1 PMID:25774204 IMP T GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. gene taxon:4577 20150616 Planteome:Ethan_Johnson -MaizeGDB 9018083 vp15 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G121468 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -MaizeGDB 9019783 caf2 leaf color TO:0000326 PMID:25725436 IMP T AC199526.5_FG003 Seedling leaves are white. gene taxon:4577 20150617 Planteome:Ethan_Johnson -MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G035820 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Austin_Meier +MaizeGDB 9018083 vp15 TO:0000619 PMID:21423772 IMP T GRMZM2G121468 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 9019783 caf2 TO:0000326 PMID:25725436 IMP T AC199526.5_FG003 Seedling leaves are white. gene taxon:4577 20150617 Planteome:Ethan_Johnson +MaizeGDB 941309 rnc1 TO:0000326 PMID:21423772 IMP T GRMZM2G035820 Seedling leaves are white. gene taxon:4577 20150619 Planteome:Austin_Meier !MaizeGDB 969623 mwp1 PMID:21423772 IMP T GRMZM2G082264 ligule on outside of leaf at base of auricle gene taxon:4577 20150619 Planteome:Ethan_Johnson !MaizeGDB 969623 mwp1 PMID:21423772 IMP T GRMZM2G082264 sometimes upper leaves may be crinkly (cr) or wab-like (wavy auricle in blade-like) gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 969623 mwp1 leaf sheath auricle pubescence TO:0002716 PMID:21423772 IMP T GRMZM2G082264 may have hairy sheaths gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 969623 mwp1 ligule anatomy and morphology trait TO:0002748 PMID:21423772 IMP T GRMZM2G082264 ligules on abaxial leaf surface gene taxon:4577 20150619 Planteome:Ethan_Johnson -MaizeGDB 97589 vp14 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G014392 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson +MaizeGDB 969623 mwp1 TO:0002716 PMID:21423772 IMP T GRMZM2G082264 may have hairy sheaths gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 969623 mwp1 TO:0002748 PMID:21423772 IMP T GRMZM2G082264 ligules on abaxial leaf surface gene taxon:4577 20150619 Planteome:Ethan_Johnson +MaizeGDB 97589 vp14 TO:0000619 PMID:21423772 IMP T GRMZM2G014392 kernels germinate while still on the ear gene taxon:4577 20150622 Planteome:Ethan_Johnson -- 2.34.1