From 41de131e2ad4a1b3b3cb5eca5149d975360d80f1 Mon Sep 17 00:00:00 2001
From: elserj <elserj@localhost>
Date: Wed, 4 May 2022 17:55:43 +0000
Subject: [PATCH] Add Cornus florida

svn path=/; revision=682
---
 interactome_scripts/find_species.pl | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 97d2e2e..bd56ac8 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -90,6 +90,8 @@ sub find_species {
 		$species = "Corchorus_capsularis";
 	}elsif ($temp =~ /Corchorus\_olitorius/) {
 		$species = "Corchorus_olitorius";
+	}elsif ($temp =~ /Cornus_florida/) {
+		$species = "Cornus_florida";
 	}elsif ($temp =~ /Cucumis\_sativus/) {
 		$species = "Cucumis_sativus";
 	}elsif ($temp =~ /Danio/) {
@@ -466,6 +468,9 @@ sub find_gene {
 	}elsif ($species eq "Corchorus_olitorius") {
 		my ($type, $gene_id, $gene_id_suffix, $function) = split(/[\|\s]+/, $gene_header);
 		$gene = $gene_id;
+	}elsif ($species eq "Cornus_florida") {
+		#my ($spec, $contig, $start, $stop, $gene_id, $unknown, $type, $junk) = split(/\|\|/, $gene_header);
+		$gene = $gene_header;
 	}elsif ($species eq "Cucumis_sativus") {
 		$gene = ensembl_gene($gene_header);
 	}elsif ($species eq "Danio_rerio") {
@@ -1178,6 +1183,7 @@ sub all_species_array {
 	push (@spec_array, "Citrus_clementina");
 	push (@spec_array, "Citrus_sinensis");
 	push (@spec_array, "Coffea_canephora");
+	push (@spec_array, "Cornus_florida");
 	push (@spec_array, "Cucumis_sativus");
 	push (@spec_array, "Danio_rerio");
 	push (@spec_array, "Dasypus_novemcinctus");
@@ -1333,6 +1339,7 @@ sub find_taxon {
 		'Coffea_canephora', '49390',
 		'Corchorus_capsularis', '210143',
 		'Corchorus_olitorius', '93759',
+		'Cornus_florida', '4283',
 		'Cucumis_sativus', '3659',
 		'Danio_rerio', '7955',
 		'Drosophila_melanogaster', '7227',
-- 
2.34.1