From 42d2c42bafc18851e5a6a27798f627712bc3f071 Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Mon, 8 Sep 2025 12:51:13 -0700 Subject: [PATCH] Updating mappings --- to-associations/to_gene_Oryza_Gramene.assoc | 2 +- to-associations/to_protein_Oryza_Gramene.assoc | 2 +- to-associations/to_qtl_glycine_SoyBase.assoc | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/to-associations/to_gene_Oryza_Gramene.assoc b/to-associations/to_gene_Oryza_Gramene.assoc index e5a257c..2bb024e 100644 --- a/to-associations/to_gene_Oryza_Gramene.assoc +++ b/to-associations/to_gene_Oryza_Gramene.assoc @@ -1691,7 +1691,7 @@ GR_gene GR:0100117 Rcn1 TO:0000137 GR_REF:9520 IMP T Putative phosphatidyletha GR_gene GR:0100117 Rcn1 TO:0000557 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|Fdr2|LOC_Os11g05470 gene taxon:4530 20121108 Gramene GR_gene GR:0100118 Rcn2 TO:0000137 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|LOC_Os02g32950 gene taxon:4530 20121108 Gramene GR_gene GR:0100118 Rcn2 TO:0000557 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|LOC_Os02g32950 gene taxon:4530 20121108 Gramene -GR_gene GR:0100118 Rcn2 TO:0000674 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|LOC_Os02g32950 gene taxon:4530 20121108 Gramene +GR_gene GR:0100118 Rcn2 TO:0000281 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|LOC_Os02g32950 gene taxon:4530 20121108 Gramene GR_gene GR:0100118 Rcn2 TO:0000675 GR_REF:9520 IMP T Putative phosphatidylethanolamine-binding protein Putative TFL1/CEN ortholog|LOC_Os02g32950 gene taxon:4530 20121108 Gramene GR_gene GR:0100119 PAIR1 TO:0000358 GR_REF:11025 IMP T HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 Coiled-coil protein|OSJNBa0009C08.13|Pair1|Homologous pairing aberration in rice meiosis 1|Pair1|Homologous pairing aberration in rice meiosis 1|LOC_Os03g01590 gene taxon:4530 20121108 Gramene GR_gene GR:0100119 PAIR1 TO:0000437 GR_REF:11025 IMP T HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 Coiled-coil protein|OSJNBa0009C08.13|Pair1|Homologous pairing aberration in rice meiosis 1|Pair1|Homologous pairing aberration in rice meiosis 1|LOC_Os03g01590 gene taxon:4530 20121108 Gramene diff --git a/to-associations/to_protein_Oryza_Gramene.assoc b/to-associations/to_protein_Oryza_Gramene.assoc index 02badfa..d74251f 100644 --- a/to-associations/to_protein_Oryza_Gramene.assoc +++ b/to-associations/to_protein_Oryza_Gramene.assoc @@ -279,7 +279,7 @@ GR_protein Q7GBF8 OsDMC1A TO:0000389 GR_REF:11089 IC T DMC1 protein taxon:399 GR_protein Q6E7D7 Q6E7D7 TO:0000599 GR_REF:11089 IC T Syn-copalyl diphosphate synthase protein taxon:39946 20080220 Gramene GR_protein Q6E7D7 Q6E7D7 TO:0000357 GR_REF:11089 IC T Syn-copalyl diphosphate synthase protein taxon:39946 20080220 Gramene GR_protein Q6ESF8 P0605D08.14 TO:0000137 GR_REF:11089 IC T Putative Cen-like protein P0605D08.14|Putative Cen-like protein|Putative TFL1/CEN ortholog protein taxon:39947 20060831 Gramene -GR_protein Q6ESF8 P0605D08.14 TO:0000674 GR_REF:11089 IC T Putative Cen-like protein P0605D08.14|Putative Cen-like protein|Putative TFL1/CEN ortholog protein taxon:39947 20060831 Gramene +GR_protein Q6ESF8 P0605D08.14 TO:0000281 GR_REF:11089 IC T Putative Cen-like protein P0605D08.14|Putative Cen-like protein|Putative TFL1/CEN ortholog protein taxon:39947 20060831 Gramene GR_protein Q6ESF8 P0605D08.14 TO:0000675 GR_REF:11089 IC T Putative Cen-like protein P0605D08.14|Putative Cen-like protein|Putative TFL1/CEN ortholog protein taxon:39947 20060831 Gramene GR_protein Q6ESF8 P0605D08.14 TO:0000557 GR_REF:11089 IC T Putative Cen-like protein P0605D08.14|Putative Cen-like protein|Putative TFL1/CEN ortholog protein taxon:39947 20060831 Gramene GR_protein Q6ET36 CPS1 TO:0000357 GR_REF:11073 IC T Putative kaurene synthase A OsCPS1|P0444A09.11|Putative kaurene synthase A protein taxon:39947 20060831 Gramene diff --git a/to-associations/to_qtl_glycine_SoyBase.assoc b/to-associations/to_qtl_glycine_SoyBase.assoc index 92d8946..ea6095f 100644 --- a/to-associations/to_qtl_glycine_SoyBase.assoc +++ b/to-associations/to_qtl_glycine_SoyBase.assoc @@ -2563,8 +2563,8 @@ SOY_QTL Seed_fill_2-1 Seed fill 2-1 TO:0002661 SOY_ref:IND20377505 IDA T Seed SOY_QTL Seed_fill_2-2 Seed fill 2-2 TO:0002661 SOY_ref:IND20377505 IDA T Seed filling period QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper SOY_QTL Seed_fill_3-1 Seed fill 3-1 TO:0002661 SOY_ref:RGB20110802.1 IDA T Seed filling period QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper SOY_QTL Seed_fill_5-1 Seed fill 5-1 TO:0002661 SOY_ref:RGB20120222.1 IDA T Seed filling period QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper -SOY_QTL Seed_fragrance_1-1 Seed fragrance 1-1 TO:0000674 SOY_ref:RGB20120726.1 IDA T Seed 2AP content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper -SOY_QTL Seed_fragrance_2-1 Seed fragrance 2-1 TO:0000674 SOY_ref:KGK20170605.2 IDA T Seed 2AP content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper +SOY_QTL Seed_fragrance_1-1 Seed fragrance 1-1 TO:0000281 SOY_ref:RGB20120726.1 IDA T Seed 2AP content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper +SOY_QTL Seed_fragrance_2-1 Seed fragrance 2-1 TO:0000281 SOY_ref:KGK20170605.2 IDA T Seed 2AP content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper SOY_QTL Seed_fucose_1-1 Seed fucose 1-1 TO:0000307 SOY_ref:TYLER007 IDA T Seed fucose content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper SOY_QTL Seed_galactose_1-1 Seed galactose 1-1 TO:0000307 SOY_ref:TYLER007 IDA T Seed galactose content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper SOY_QTL Seed_genistein_10-1 Seed genistein 10-1 TO:0000290 SOY_ref:KGK20170522.2 IDA T Seed genistein content QTL taxon:3847 20230110 SoyBase:Rex_Nelson|Planteome:Laurel_Cooper -- 2.34.1