From 43bc42c9e40ce9541d914882e983e6929797cb33 Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Thu, 16 Oct 2025 11:48:13 -0600 Subject: [PATCH] Fixing blank references --- .../peco_gene_Oryza_Gramene.assoc | 82 +++++++++---------- 1 file changed, 41 insertions(+), 41 deletions(-) diff --git a/peco-associations/peco_gene_Oryza_Gramene.assoc b/peco-associations/peco_gene_Oryza_Gramene.assoc index d4db723..953e1af 100644 --- a/peco-associations/peco_gene_Oryza_Gramene.assoc +++ b/peco-associations/peco_gene_Oryza_Gramene.assoc @@ -25,7 +25,7 @@ GR_gene GR:0060261 DU1 PECO:0007226 GR_REF:3313 IC E DULL ENDOSPERM 1 low amyl GR_gene GR:0060213 D35 PECO:0007048 GR_REF:8302 IC E dwarf-35 tanginbozu dwarf|d35(t)|dwf30|Tan-Ginbozu|ent-kaurene oxidase|KO|OsKOL2|KOL2|d35|d35|LOC_Os06g37300 gene taxon:4530 20121108 Gramene GR_gene GR:0060213 D35 PECO:0007226 GR_REF:8302 IC E dwarf-35 tanginbozu dwarf|d35(t)|dwf30|Tan-Ginbozu|ent-kaurene oxidase|KO|OsKOL2|KOL2|d35|d35|LOC_Os06g37300 gene taxon:4530 20121108 Gramene GR_gene GR:0060213 D35 PECO:0007257 GR_REF:8302 IC E dwarf-35 tanginbozu dwarf|d35(t)|dwf30|Tan-Ginbozu|ent-kaurene oxidase|KO|OsKOL2|KOL2|d35|d35|LOC_Os06g37300 gene taxon:4530 20121108 Gramene -GR_gene GR:0060291 EM PECO:0007266 GR_REF:0 IC E ABA REGULATED GENE Em|ABA-regulated gene|Em|ABA-regulated gene|LOC_Os05g28210 gene taxon:4530 20121108 Gramene +GR_gene GR:0060291 EM PECO:0007266 10.1007/BF00027357 IC E ABA REGULATED GENE Em|ABA-regulated gene|Em|ABA-regulated gene|LOC_Os05g28210 gene taxon:4530 20121108 Gramene GR_gene GR:0060297 EPSPS1 PECO:0007226 GR_REF:10022 IC E 5-Enolpyruvylshikimate-3-phosphate synthase 1 EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|LOC_Os06g04280 gene taxon:4530 20121108 Gramene GR_gene GR:0060297 EPSPS1 PECO:0007257 GR_REF:10022 IC E 5-Enolpyruvylshikimate-3-phosphate synthase 1 EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|LOC_Os06g04280 gene taxon:4530 20121108 Gramene GR_gene GR:0060297 EPSPS1 PECO:0007383 GR_REF:10022 IC E 5-Enolpyruvylshikimate-3-phosphate synthase 1 EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|EPSPS|EPSP synthase|5-Enolpyruvylshikimate-3-phosphate (EPSP) synthase-1|3-phosphoshikimate 1-carboxyvinyltransferase|EPSP|5-Enolpyruvylshikimate-3-phosphate synthase|LOC_Os06g04280 gene taxon:4530 20121108 Gramene @@ -184,7 +184,7 @@ GR_gene GR:0020028 iaa28 PECO:0007269 GR_REF:11066 IC E indoleacetic acid 24 A GR_gene GR:0020028 iaa28 PECO:0007266 GR_REF:11066 IC E indoleacetic acid 24 Auxin-responsive protein IAA24|Indoleacetic acid-induced protein 24|OJ1506_G02.9|OsIAA24|Putative auxin-induced protein|LOC_Os07g08460 gene taxon:4530 20121108 Gramene GR_gene GR:0020028 iaa28 PECO:0007383 GR_REF:11066 IC E indoleacetic acid 24 Auxin-responsive protein IAA24|Indoleacetic acid-induced protein 24|OJ1506_G02.9|OsIAA24|Putative auxin-induced protein|LOC_Os07g08460 gene taxon:4530 20121108 Gramene GR_gene GR:0020030 iaa26 PECO:0007269 GR_REF:11066 IC E Indoleacetic acid-induced protein 26 Auxin-responsive protein IAA26|Putative Auxin-induced protein|OJ1439_F07.27|OsIAA26|indoleacetic acid 26|iaa26|LOC_Os09g35870 gene taxon:4530 20121108 Gramene -GR_gene GR:0020026 iaa22 PECO:0007269 GR_REF:0 IC E indoleacetic acid 22 LOC_Os06g24850 gene taxon:4530 20121108 Gramene +GR_gene GR:0020026 iaa22 PECO:0007269 DOI:10.1007/s10142-005-0005-0 IC E indoleacetic acid 22 LOC_Os06g24850 gene taxon:4530 20121108 Gramene GR_gene GR:0020029 iaa25 PECO:0007269 GR_REF:11066 IC E indoleacetic acid 25 Auxin-responsive protein IAA25|Indoleacetic acid-induced protein 25|OsIAA25|LOC_Os08g01780 gene taxon:4530 20121108 Gramene GR_gene GR:0020020 iaa16 PECO:0007048 GR_REF:11066 IC E indoleacetic acid 16 Auxin-responsive protein IAA16|Indoleacetic acid-induced protein 16|OsIAA16|LOC_Os05g09480 gene taxon:4530 20121108 Gramene GR_gene GR:0020020 iaa16 PECO:0007226 GR_REF:11066 IC E indoleacetic acid 16 Auxin-responsive protein IAA16|Indoleacetic acid-induced protein 16|OsIAA16|LOC_Os05g09480 gene taxon:4530 20121108 Gramene @@ -236,7 +236,7 @@ GR_gene GR:0100133 cox5b PECO:0007048 GR_REF:1833 IC E Cytochrome c oxidase su GR_gene GR:0100133 cox5b PECO:0007226 GR_REF:1833 IC E Cytochrome c oxidase subunit 5b coxVb|Cytochrome c oxidase subunit Vb|LOC_Os01g42650 gene taxon:4530 20121108 Gramene GR_gene GR:0100133 cox5b PECO:0007266 GR_REF:1833 IC E Cytochrome c oxidase subunit 5b coxVb|Cytochrome c oxidase subunit Vb|LOC_Os01g42650 gene taxon:4530 20121108 Gramene GR_gene GR:0100133 cox5b PECO:0007383 GR_REF:1833 IC E Cytochrome c oxidase subunit 5b coxVb|Cytochrome c oxidase subunit Vb|LOC_Os01g42650 gene taxon:4530 20121108 Gramene -GR_gene GR:0100135 cox15 PECO:0007257 GR_REF:0 IC E Cytochrome c oxidase subunit 15 LOC_Os08g38720 gene taxon:4530 20121108 Gramene +GR_gene GR:0100135 cox15 PECO:0007257 DOI:10.3390/cimb46070388 IC E Cytochrome c oxidase subunit 15 LOC_Os08g38720 gene taxon:4530 20121108 Gramene GR_gene GR:0100153 rps19 PECO:0007266 GR_REF:7068 IC E Ribosomal protein S19 LOC_Osm1g00450 gene taxon:4530 20121108 Gramene GR_gene GR:0100155 rps3 PECO:0007105 GR_REF:7068 IC E Ribosomal protein S3 Mitochondrial ribosomal protein S3|LOC_Osm1g00260 gene taxon:4530 20121108 Gramene GR_gene GR:0100155 rps3 PECO:0007174 GR_REF:7068 IC E Ribosomal protein S3 Mitochondrial ribosomal protein S3|LOC_Osm1g00260 gene taxon:4530 20121108 Gramene @@ -247,35 +247,35 @@ GR_gene GR:0020050 gid1 PECO:0007174 GR_REF:11083 IC E Gibberellin-insensitive GR_gene GR:0020050 gid1 PECO:0007226 GR_REF:11083 IC E Gibberellin-insensitive dwarf protein 1 Hypothetical protein OJ1657_H11.10|OsGID1|OJ1657_H11.10|LOC_Os05g33730 gene taxon:4530 20121108 Gramene GR_gene GR:0020050 gid1 PECO:0007248 GR_REF:11083 IC E Gibberellin-insensitive dwarf protein 1 Hypothetical protein OJ1657_H11.10|OsGID1|OJ1657_H11.10|LOC_Os05g33730 gene taxon:4530 20121108 Gramene GR_gene GR:0020050 gid1 PECO:0007266 GR_REF:11083 IC E Gibberellin-insensitive dwarf protein 1 Hypothetical protein OJ1657_H11.10|OsGID1|OJ1657_H11.10|LOC_Os05g33730 gene taxon:4530 20121108 Gramene -GR_gene GR:0100183 sdhA PECO:0007048 GR_REF:0 IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene -GR_gene GR:0100183 sdhA PECO:0007105 GR_REF:0 IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene -GR_gene GR:0100183 sdhA PECO:0007226 GR_REF:0 IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene -GR_gene GR:0100183 sdhA PECO:0007266 GR_REF:0 IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene -GR_gene GR:0100187 qcr6 PECO:0007105 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene -GR_gene GR:0100187 qcr6 PECO:0007199 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene -GR_gene GR:0100187 qcr6 PECO:0007200 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene -GR_gene GR:0100187 qcr6 PECO:0007266 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene -GR_gene GR:0100187 qcr6 PECO:0007270 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007048 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007174 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007185 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007199 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007200 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007266 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007270 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007383 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene -GR_gene GR:0100188 qcr7 PECO:0007404 GR_REF:0 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100183 sdhA PECO:0007048 DOI:10.1007/s11103-009-9573-z IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene +GR_gene GR:0100183 sdhA PECO:0007105 DOI:10.1007/s11103-009-9573-z IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene +GR_gene GR:0100183 sdhA PECO:0007226 DOI:10.1007/s11103-009-9573-z IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene +GR_gene GR:0100183 sdhA PECO:0007266 DOI:10.1007/s11103-009-9573-z IC E Succinate dehydrogenase (ubiquinone) flavoprotein subunit Succinate dehydrogenase subunit 1|succinate dehydrogenase flavoprotein alpha subunit|sdh1|Succinate dehydrogenase (ubiquinone) flavoprotein|LOC_Os07g04240 gene taxon:4530 20121108 Gramene +GR_gene GR:0100187 qcr6 PECO:0007105 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene +GR_gene GR:0100187 qcr6 PECO:0007199 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene +GR_gene GR:0100187 qcr6 PECO:0007200 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene +GR_gene GR:0100187 qcr6 PECO:0007266 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene +GR_gene GR:0100187 qcr6 PECO:0007270 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 6 LOC_Os11g06340 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007048 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007174 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007185 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007199 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007200 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007266 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007270 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007383 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene +GR_gene GR:0100188 qcr7 PECO:0007404 GR_REF:11089 IC E ubiquinol-cytochrome c reductase subunit 7 LOC_Os03g59220 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007048 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007105 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007174 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007226 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007266 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene GR_gene GR:0100189 atpB1 PECO:0007383 GR_REF:3792 IC E ATP synthase F1 beta subunit 1 F0-F1 ATPase beta subunit|F1-ATPase beta subunit|ATP synthase F0-F1 beta subunit|LOC_Os05g47980 gene taxon:4530 20121108 Gramene -GR_gene GR:0100191 atpG PECO:0007048 GR_REF:0 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene -GR_gene GR:0100191 atpG PECO:0007174 GR_REF:0 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene -GR_gene GR:0100191 atpG PECO:0007200 GR_REF:0 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene -GR_gene GR:0100191 atpG PECO:0007226 GR_REF:0 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene -GR_gene GR:0100191 atpG PECO:0007266 GR_REF:0 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene +GR_gene GR:0100191 atpG PECO:0007048 GR_REF:11089 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene +GR_gene GR:0100191 atpG PECO:0007174 GR_REF:11089 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene +GR_gene GR:0100191 atpG PECO:0007200 GR_REF:11089 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene +GR_gene GR:0100191 atpG PECO:0007226 GR_REF:11089 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene +GR_gene GR:0100191 atpG PECO:0007266 GR_REF:11089 IC E ATP synthase F1 gamma subunit ATP synthase gamma subunit|F0-F1 ATPase gamma subunit|F1-ATPase gamma subunit|ATP synthase F0-F1 gamma subunit|ATPase F1 gamma subunit|LOC_Os10g17280 gene taxon:4530 20121108 Gramene GR_gene GR:0020051 ckx2 PECO:0007226 GR_REF:10993 IC E Cytokinin oxidase/dehydrogenase 2 OsCKX2|Cytokinin oxidase/dehydrogenase|Gn1a|LOC_Os01g10110 gene taxon:4530 20121108 Gramene GR_gene GR:0020051 ckx2 PECO:0007255 GR_REF:10993 IC E Cytokinin oxidase/dehydrogenase 2 OsCKX2|Cytokinin oxidase/dehydrogenase|Gn1a|LOC_Os01g10110 gene taxon:4530 20121108 Gramene GR_gene GR:0020051 ckx2 PECO:0007256 GR_REF:10993 IC E Cytokinin oxidase/dehydrogenase 2 OsCKX2|Cytokinin oxidase/dehydrogenase|Gn1a|LOC_Os01g10110 gene taxon:4530 20121108 Gramene @@ -283,16 +283,16 @@ GR_gene GR:0020052 ckx3 PECO:0007266 GR_REF:11086 IC E Putative cytokinin oxid GR_gene GR:0020053 ckx4 PECO:0007226 GR_REF:11086 IC E Putative cytokinin dehydrogenase 4 B1150F11.25|OsCKX4|Putative cytokinin dehydrogenase|LOC_Os01g71310 gene taxon:4530 20121108 Gramene GR_gene GR:0020053 ckx4 PECO:0007267 GR_REF:11086 IC E Putative cytokinin dehydrogenase 4 B1150F11.25|OsCKX4|Putative cytokinin dehydrogenase|LOC_Os01g71310 gene taxon:4530 20121108 Gramene GR_gene GR:0020053 ckx4 PECO:0007383 GR_REF:11086 IC E Putative cytokinin dehydrogenase 4 B1150F11.25|OsCKX4|Putative cytokinin dehydrogenase|LOC_Os01g71310 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007105 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007174 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007199 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007200 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007226 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007256 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007266 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007270 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100192 Q67W57 PECO:0007383 GR_REF:0 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene -GR_gene GR:0100193 Q8GTK7 PECO:0007266 GR_REF:0 IC E ATP synthase F1 delta prime subunit ATP synthase delta prime subunit|ATPase F1 delta prime subunit|F0-F1 ATPase delta prime subunit|F1-ATPase delta prime subunit|ATP synthase F0-F1 delta' subunit|LOC_Os07g31300 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007105 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007174 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007199 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007200 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007226 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007256 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007266 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007270 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100192 Q67W57 PECO:0007383 GR_REF:11089 IC E ATP synthase F1 delta subunit ATP synthase delta subunit|ATPase F1 delta subunit|F0-F1 ATPase delta subunit|F1-ATPase delta subunit|ATP synthase F0-F1 delta subunit|LOC_Os06g43850 gene taxon:4530 20121108 Gramene +GR_gene GR:0100193 Q8GTK7 PECO:0007266 GR_REF:11089 IC E ATP synthase F1 delta prime subunit ATP synthase delta prime subunit|ATPase F1 delta prime subunit|F0-F1 ATPase delta prime subunit|F1-ATPase delta prime subunit|ATP synthase F0-F1 delta' subunit|LOC_Os07g31300 gene taxon:4530 20121108 Gramene GR_gene GR:0020057 rr3 PECO:0007383 GR_REF:11087 IC E Type A response regulator 3 OsRR3|LOC_Os02g58350 gene taxon:4530 20121108 Gramene GR_gene GR:0020060 rr6 PECO:0007266 GR_REF:11087 IC E Type A response regulator 6 OsRR6|Type A response regulator 6|LOC_Os04g57720 gene taxon:4530 20121108 Gramene GR_gene GR:0020060 rr6 PECO:0007383 GR_REF:11087 IC E Type A response regulator 6 OsRR6|Type A response regulator 6|LOC_Os04g57720 gene taxon:4530 20121108 Gramene @@ -373,12 +373,12 @@ GR_gene GR:0100506 rrp PECO:0007270 GR_REF:11097 IC E RNAse related protein Os GR_gene GR:0100506 rrp PECO:0007318 GR_REF:11097 IC E RNAse related protein OsRRP|RNase S-like protein|LOC_Os09g36680 gene taxon:4530 20121108 Gramene GR_gene GR:0100506 rrp PECO:0007404 GR_REF:11097 IC E RNAse related protein OsRRP|RNase S-like protein|LOC_Os09g36680 gene taxon:4530 20121108 Gramene GR_gene GR:0020081 ga20ox3 PECO:0007255 GR_REF:11073 IC E gibberellin C-20 oxidase 3 Putative gibberellin 20-dioxygenase|OSJNBa0050F10.19|Gibberellin-20 oxidase 3|LOC_Os07g07420 gene taxon:4530 20121108 Gramene -GR_gene GR:0020082 ga20ox4 PECO:0007226 GR_REF:0 IC E gibberellin C-20 oxidase 4 Putative gibberellin 20-dioxygenase|OSJNBb0092E21.11|Putative gibberellin 20-dioxygenase 4|LOC_Os05g34854 gene taxon:4530 20121108 Gramene -GR_gene GR:0020082 ga20ox4 PECO:0007255 GR_REF:0 IC E gibberellin C-20 oxidase 4 Putative gibberellin 20-dioxygenase|OSJNBb0092E21.11|Putative gibberellin 20-dioxygenase 4|LOC_Os05g34854 gene taxon:4530 20121108 Gramene +GR_gene GR:0020082 ga20ox4 PECO:0007226 DOI:10.1270/jsbbs.22075 IC E gibberellin C-20 oxidase 4 Putative gibberellin 20-dioxygenase|OSJNBb0092E21.11|Putative gibberellin 20-dioxygenase 4|LOC_Os05g34854 gene taxon:4530 20121108 Gramene +GR_gene GR:0020082 ga20ox4 PECO:0007255 DOI:10.1270/jsbbs.22075 IC E gibberellin C-20 oxidase 4 Putative gibberellin 20-dioxygenase|OSJNBb0092E21.11|Putative gibberellin 20-dioxygenase 4|LOC_Os05g34854 gene taxon:4530 20121108 Gramene GR_gene GR:0100601 Dmc1 PECO:0007255 GR_REF:11122 IC E Disrupted meiotic cDNA 1 OsDmc1|OsDmc1A|OsDmc1B|Dmc1A|Dmc1B|LOC_Os12g04980 gene taxon:4530 20121108 Gramene GR_gene GR:0010807 Tpc1 PECO:0007226 GR_REF:11138 IC E Two-pore channel 1 OsCC1|OsTPC1|LOC_Os01g48680 gene taxon:4530 20121108 Gramene GR_gene GR:0020090 saur8 PECO:0007199 GR_REF:11151 IC E Small Auxin-Up RNA 8 OsSAUR8|Putative auxin-induced protein|OJ1116_C12.13|LOC_Os02g24700 gene taxon:4530 20121108 Gramene -GR_gene GR:0020092 saur10 PECO:0007048 GR_REF:0 IC E Small Auxin-Up RNA 10 OsSAUR10|Hypothetical protein OJ1789_D08.2|OJ1789_D08.2|OSJNBa0001A11.30|LOC_Os02g30810 gene taxon:4530 20121108 Gramene +GR_gene GR:0020092 saur10 PECO:0007048 DOI:10.1186/s12870-024-05492-9 IC E Small Auxin-Up RNA 10 OsSAUR10|Hypothetical protein OJ1789_D08.2|OJ1789_D08.2|OSJNBa0001A11.30|LOC_Os02g30810 gene taxon:4530 20121108 Gramene GR_gene GR:0020093 saur11 PECO:0007048 GR_REF:7047 IC E Small Auxin-Up RNA 11 OsSAUR11|Auxin-responsive protein-like|OJ1282_H11.12|LOC_Os02g42990 gene taxon:4530 20121108 Gramene GR_gene GR:0020093 saur11 PECO:0007404 GR_REF:7047 IC E Small Auxin-Up RNA 11 OsSAUR11|Auxin-responsive protein-like|OJ1282_H11.12|LOC_Os02g42990 gene taxon:4530 20121108 Gramene GR_gene GR:0000111 saur29 PECO:0007266 GR_REF:7047 IC E Small Auxin-Up RNA 29 OsSAUR29|Auxin-induced protein-like|OJ1136_F03.27|LOC_Os06g50040 gene taxon:4530 20121108 Gramene @@ -470,8 +470,8 @@ GR_gene GR:0020194 bhlh56 PECO:0007226 GR_REF:11280 IC E basic/helix-loop-heli GR_gene GR:0020194 bhlh56 PECO:0007254 GR_REF:11280 IC E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene GR_gene GR:0020194 bhlh56 PECO:0007266 GR_REF:11280 IC E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene GR_gene GR:0020194 bhlh56 PECO:0007408 GR_REF:11280 IC E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene -GR_gene GR:0020195 bhlh57 PECO:0007226 GR_REF:0 IC E basic/helix-loop-helix 57 basic helix loop helix 57|OsbHLH057|OsbHLH57|LOC_Os07g35870 gene taxon:4530 20121108 Gramene -GR_gene GR:0020195 bhlh57 PECO:0007266 GR_REF:0 IC E basic/helix-loop-helix 57 basic helix loop helix 57|OsbHLH057|OsbHLH57|LOC_Os07g35870 gene taxon:4530 20121108 Gramene +GR_gene GR:0020195 bhlh57 PECO:0007226 DOI:10.3390/ijms232314869 IC E basic/helix-loop-helix 57 basic helix loop helix 57|OsbHLH057|OsbHLH57|LOC_Os07g35870 gene taxon:4530 20121108 Gramene +GR_gene GR:0020195 bhlh57 PECO:0007266 DOI:10.3390/ijms232314869 IC E basic/helix-loop-helix 57 basic helix loop helix 57|OsbHLH057|OsbHLH57|LOC_Os07g35870 gene taxon:4530 20121108 Gramene GR_gene GR:0020196 bhlh58 PECO:0007266 GR_REF:11280 IC E basic/helix-loop-helix 58 basic helix loop helix 58|OsbHLH058|OsbHLH58|OJ1651_D06.8|LOC_Os05g38140 gene taxon:4530 20121108 Gramene GR_gene GR:0800010 AID1 PECO:0007248 GR_REF:8303 IC E Anther Indehiscence1 OsAID1|LOC_Os06g08290 gene taxon:4530 20121108 Gramene GR_gene GR:0020197 bhlh59 PECO:0007105 GR_REF:11280 IC E basic/helix-loop-helix 59 basic helix loop helix 59|OsbHLH059|OsbHLH59|OJ1442_E05.19|LOC_Os02g02480 gene taxon:4530 20121108 Gramene -- 2.34.1