From 46dd2382df3e9b14ca7768c606e578e68bd4c101 Mon Sep 17 00:00:00 2001 From: cooperl09 Date: Fri, 15 Aug 2025 13:57:27 -0700 Subject: [PATCH] Moved annotations from pollen sterility (TO:0000053) to TO:0000437 male sterility --- .../to_protein_Oryza_Gramene.assoc | 25 ++++++++----------- 1 file changed, 11 insertions(+), 14 deletions(-) diff --git a/to-associations/to_protein_Oryza_Gramene.assoc b/to-associations/to_protein_Oryza_Gramene.assoc index 3eb9990..948fb05 100644 --- a/to-associations/to_protein_Oryza_Gramene.assoc +++ b/to-associations/to_protein_Oryza_Gramene.assoc @@ -30,9 +30,9 @@ GR_protein Q9XJ66 MADS22 TO:0001000 GR_REF:11425 IMP T MADS-box transcription GR_protein Q9XJ66 MADS22 TO:0000079 GR_REF:11425 IMP T MADS-box transcription factor 22 OsMADS22|RMD1 protein taxon:39947 20061215 Gramene GR_protein Q9XJ66 MADS22 TO:0000614 GR_REF:11425 IMP T MADS-box transcription factor 22 OsMADS22|RMD1 protein taxon:39947 20061215 Gramene GR_protein Q9XJ66 MADS22 TO:0000485 GR_REF:11425 IMP T MADS-box transcription factor 22 OsMADS22|RMD1 protein taxon:39947 20061215 Gramene -GR_protein Q40629 RTS2 TO:0000111 GR_REF:11264 IMP T Anther specific RTS|RTS2|Tapetum-specific protein taxon:39946 20060831 Gramene +GR_protein Q40629 RTS2 TO:0000111 GR_REF:11264 IMP T Anther specific RTS|RTS2|Tapetum-specific protein taxon:39946 20060831 Gramene|TO:cooperl GR_protein Q40629 RTS2 TO:0000245 GR_REF:11264 IMP T Anther specific RTS|RTS2|Tapetum-specific protein taxon:39946 20060831 Gramene -GR_protein Q40629 RTS2 TO:0000053 GR_REF:11264 IMP T Anther specific RTS|RTS2|Tapetum-specific protein taxon:39946 20060831 Gramene +GR_protein Q40629 RTS2 TO:0000437 GR_REF:11264 IMP T Anther specific RTS|RTS2|Tapetum-specific protein taxon:39946 20060831 Gramene GR_protein Q9SB03 Waxy TO:0000098 GR_REF:11089 IC T Waxy GBSS|Granule-bound glycogen [starch] synthase, chloroplast precursor|Granule-bound glycogen synthase|UDP-glycogen synthase|UDPG-glycogen synthetase|UDPG-glycogen transglucosylase|Waxy|glutinous endosperm|glycogen [starch] synthase|glycogen [starch] synthetase|uridine diphosphoglucose-glycogen glucosyltransferase protein taxon:39947 20060831 Gramene GR_protein Q9FRZ7 Q9FRZ7 TO:0000137 GR_REF:11089 IC T Flowering date-1 Hd1|Heading date-1|K|Lf|Lm|Photoperiod-sensitivity-1|Rs|Se1 protein taxon:4530 20060831 Gramene GR_protein Q9FRZ7 Q9FRZ7 TO:0000229 GR_REF:11089 IC T Flowering date-1 Hd1|Heading date-1|K|Lf|Lm|Photoperiod-sensitivity-1|Rs|Se1 protein taxon:4530 20060831 Gramene @@ -73,7 +73,7 @@ GR_protein Q9FU27 DOS TO:0000455 GR_REF:11145 IMP T delay of the onset of sene GR_protein Q9FU27 DOS TO:0000227 GR_REF:11145 IMP T delay of the onset of senescence CCCH-type zinc finger protein-like|OsDOS|P0671B11.13 protein taxon:39947 20070205 Gramene GR_protein Q9FU27 DOS TO:0000447 GR_REF:11145 IMP T delay of the onset of senescence CCCH-type zinc finger protein-like|OsDOS|P0671B11.13 protein taxon:39947 20080408 Gramene GR_protein Q9AWX3 SaF TO:0000036 GR_REF:11089 IC T SaF P0013G02.19|Ribosomal RNA apurinic site specific lyase-like protein taxon:39947 20090501 Gramene -GR_protein Q9AWX3 SaF TO:0000053 GR_REF:11089 IC T SaF P0013G02.19|Ribosomal RNA apurinic site specific lyase-like protein taxon:39947 20090501 Gramene +GR_protein Q9AWX3 SaF TO:0000437 GR_REF:11089 IC T SaF P0013G02.19|Ribosomal RNA apurinic site specific lyase-like protein taxon:39947 20090501 Gramene|TO:cooperl GR_protein Q40643 RA TO:0000487 GR_REF:11089 IC T Transcriptional activator Ra protein taxon:4530 20060831 Gramene GR_protein Q40643 RA TO:0000190 GR_REF:11089 IC T Transcriptional activator Ra protein taxon:4530 20060831 Gramene GR_protein Q40615 Q40615 TO:0000487 GR_REF:11089 IC T Transcriptional activator Ra homolog protein taxon:4529 20060831 Gramene @@ -131,11 +131,11 @@ GR_protein Q8VWY5 OsDMC1 TO:0000599 GR_REF:11089 IC T OsDmc1 Protein protein GR_protein Q8VWY5 OsDMC1 TO:0000389 GR_REF:11089 IC T OsDmc1 Protein protein taxon:39947 20070625 Gramene GR_protein Q8RZV7 P0413C03.22 TO:0000725 GR_REF:11089 IC T Putative extra sporogenous cells P0413C03.19|Putative extra sporogenous cells|Putative leucin-rich repeat protein kinase|multiple sporocyte protein taxon:39947 20060831 Gramene GR_protein Q8RZV7 P0413C03.22 TO:0000726 GR_REF:11089 IC T Putative extra sporogenous cells P0413C03.19|Putative extra sporogenous cells|Putative leucin-rich repeat protein kinase|multiple sporocyte protein taxon:39947 20060831 Gramene -GR_protein Q8RZV7 P0413C03.22 TO:0000437 GR_REF:11089 IC T Putative extra sporogenous cells P0413C03.19|Putative extra sporogenous cells|Putative leucin-rich repeat protein kinase|multiple sporocyte protein taxon:39947 20060831 Gramene +GR_protein Q8RZV7 P0413C03.22 TO:0000437 GR_REF:11089 IC T Putative extra sporogenous cells P0413C03.19|Putative extra sporogenous cells|Putative leucin-rich repeat protein kinase|multiple sporocyte protein taxon:39947 20060831 Gramene|TO:cooperl GR_protein Q8RZ35 ABI5 TO:0000615 GR_REF:11669 IMP T ABA Insensitive 5 OsABI5|Putative ABA response element binding factor protein taxon:39947 20080208 Gramene GR_protein Q8RZ35 ABI5 TO:0000420 GR_REF:11669 IMP T ABA Insensitive 5 OsABI5|Putative ABA response element binding factor protein taxon:39947 20080208 Gramene GR_protein Q8RZ35 ABI5 TO:0000429 GR_REF:11669 IMP T ABA Insensitive 5 OsABI5|Putative ABA response element binding factor protein taxon:39947 20080208 Gramene -GR_protein Q8RZ35 ABI5 TO:0000053 GR_REF:11669 IMP T ABA Insensitive 5 OsABI5|Putative ABA response element binding factor protein taxon:39947 20080208 Gramene +GR_protein Q8RZ35 ABI5 TO:0000437 GR_REF:11669 IMP T ABA Insensitive 5 OsABI5|Putative ABA response element binding factor protein taxon:39947 20080208 Gramene|TO:cooperl GR_protein Q8LN68 Os03g49880 TO:0000027 GR_REF:11089 IC T Teosinte branched1 Protein OsTB1 protein taxon:39947 20060831 Gramene GR_protein Q8LN68 Os03g49880 TO:0000027 GR_REF:7850 IMP T Teosinte branched1 Protein OsTB1 protein taxon:39947 20060831 Gramene GR_protein Q8LN68 Os03g49880 TO:0002639 GR_REF:7850 IEP T Teosinte branched1 Protein OsTB1 protein taxon:39947 20060831 Gramene @@ -172,8 +172,7 @@ GR_protein Q8GSQ1 CYP85A1 TO:0000576 GR_REF:7051 IMP T Cytochrome P450 85A1 C6 GR_protein Q8GSQ1 CYP85A1 TO:0000492 GR_REF:7051 IMP T Cytochrome P450 85A1 C6-oxidase|OsDWARF protein taxon:39947 20060831 Gramene GR_protein Q8GSQ1 CYP85A1 TO:0000642 GR_REF:7051 IMP T Cytochrome P450 85A1 C6-oxidase|OsDWARF protein taxon:39947 20060831 Gramene GR_protein Q851R2 MEL1 TO:0000358 GR_REF:11642 IMP T MEL1 MEAL1|MEIOSIS ARRESTED AT LEPTOTENE1|Putative argonaute protein protein taxon:39947 20080221 Gramene -GR_protein Q851R2 MEL1 TO:0000437 GR_REF:11642 IMP T MEL1 MEAL1|MEIOSIS ARRESTED AT LEPTOTENE1|Putative argonaute protein protein taxon:39947 20080221 Gramene -GR_protein Q851R2 MEL1 TO:0000053 GR_REF:11642 IMP T MEL1 MEAL1|MEIOSIS ARRESTED AT LEPTOTENE1|Putative argonaute protein protein taxon:39947 20080221 Gramene +GR_protein Q851R2 MEL1 TO:0000437 GR_REF:11642 IMP T MEL1 MEAL1|MEIOSIS ARRESTED AT LEPTOTENE1|Putative argonaute protein protein taxon:39947 20080221 Gramene|TO:cooperl GR_protein Q851R2 MEL1 TO:0000436 GR_REF:11642 IMP T MEL1 MEAL1|MEIOSIS ARRESTED AT LEPTOTENE1|Putative argonaute protein protein taxon:39947 20080221 Gramene GR_protein Q84UT5 OsBLE3 TO:0000145 GR_REF:11427 IMP T Hypothetical Protein OsBLE3 protein taxon:39947 20060831 Gramene GR_protein Q84UT5 OsBLE3 TO:0000206 GR_REF:11427 IMP T Hypothetical Protein OsBLE3 protein taxon:39947 20060831 Gramene @@ -227,9 +226,8 @@ GR_protein Q6L8G3 FRO1 TO:0000021 GR_REF:11089 IC T Ferric-Chelate Reductase 1 GR_protein Q6L8G3 FRO1 TO:0000073 GR_REF:11089 IC T Ferric-Chelate Reductase 1 0sFRO1|Ferric reductase|Ferric-Chelate Reductase protein taxon:39947 20080717 Gramene GR_protein Q6L8G3 FRO1 TO:0000351 GR_REF:11089 IC T Ferric-Chelate Reductase 1 0sFRO1|Ferric reductase|Ferric-Chelate Reductase protein taxon:39947 20080717 Gramene GR_protein Q6T804 AID1 TO:0000137 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene -GR_protein Q6T804 AID1 TO:0000437 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene GR_protein Q6T804 AID1 TO:0000245 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene -GR_protein Q6T804 AID1 TO:0000053 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene +GR_protein Q6T804 AID1 TO:0000437 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene|TO:cooperl GR_protein Q6T804 AID1 TO:0000436 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene GR_protein Q6T804 AID1 TO:0000346 GR_REF:8303 IMP T ANTHER INDEHISCENCE1 protein taxon:39947 20060831 Gramene GR_protein Q6VQR2 Q6VQR2 TO:0000137 GR_REF:11089 IC T Flowering time control protein isoform rFCA-4 protein taxon:39946 20060831 Gramene @@ -267,7 +265,7 @@ GR_protein Q70YQ4 Q70YQ4 TO:0000227 GR_REF:8318 IMP T Putative casein kinase I GR_protein Q70YQ4 Q70YQ4 TO:0000084 GR_REF:8318 IMP T Putative casein kinase I OsCKI1 protein taxon:39947 20060831 Gramene GR_protein Q70YQ4 Q70YQ4 TO:0000206 GR_REF:8318 IMP T Putative casein kinase I OsCKI1 protein taxon:39947 20060831 Gramene GR_protein Q75KR1 OSJNBa0036E17.10 TO:0002654 GR_REF:11089 IC T Cytosolic pyruvate orthophosphate dikinase protein taxon:39947 20070430 Gramene -GR_protein Q75RY2 PAIR1 TO:0000437 GR_REF:11089 IC T protein PAIR1 Coiled-coil protein|OSJNBa0009C08.13 protein taxon:39947 20060831 Gramene +GR_protein Q75RY2 PAIR1 TO:0000437 GR_REF:11089 IC T protein PAIR1 Coiled-coil protein|OSJNBa0009C08.13 protein taxon:39947 20060831 Gramene|TO:cooperl GR_protein Q75RY2 PAIR1 TO:0000358 GR_REF:11089 IC T protein PAIR1 Coiled-coil protein|OSJNBa0009C08.13 protein taxon:39947 20060831 Gramene GR_protein Q75RY2 PAIR1 TO:0000729 GR_REF:11089 IC T protein PAIR1 Coiled-coil protein|OSJNBa0009C08.13 protein taxon:39947 20060831 Gramene GR_protein Q76CY8 OsASY1 TO:0000729 GR_REF:11089 IC T Essential protein for meiotic synapsis Essential protein for meiotic synapsis|OsASY1 protein taxon:39947 20060831 Gramene @@ -312,7 +310,7 @@ GR_protein Q69YD9 P0701E03.28 TO:0000180 GR_REF:11089 IC T Hybrid sterility-5 GR_protein Q6AVA8 OJ1174_H11.5 TO:0000075 GR_REF:11089 IC T Putative pyruvate orthophosphate dikinase protein taxon:39947 20070430 Gramene GR_protein Q6AVA8 OJ1174_H11.5 TO:0000104 GR_REF:11089 IC T Putative pyruvate orthophosphate dikinase protein taxon:39947 20070430 Gramene GR_protein Q64MA3 RAD TO:0000060 GR_REF:9503 IMP T RAD OSJNOa273B05.7|OsGEN-L|OsRAD|Putative single-strand DNA endonuclease-1 protein taxon:4530 20070130 Gramene -GR_protein Q64MA3 RAD TO:0000053 GR_REF:9503 IMP T RAD OSJNOa273B05.7|OsGEN-L|OsRAD|Putative single-strand DNA endonuclease-1 protein taxon:4530 20070130 Gramene +GR_protein Q64MA3 RAD TO:0000437 GR_REF:9503 IMP T RAD OSJNOa273B05.7|OsGEN-L|OsRAD|Putative single-strand DNA endonuclease-1 protein taxon:4530 20070130 Gramene|TO:cooperl GR_protein Q652K1 OJ1254_E07.23 TO:0002712 GR_REF:11089 IC T stay green OJ1254_E07.23|P0515E01.8 protein taxon:39947 20080211 Gramene GR_protein Q652K1 OJ1254_E07.23 TO:0000298 GR_REF:11089 IC T stay green OJ1254_E07.23|P0515E01.8 protein taxon:39947 20080211 Gramene GR_protein Q652K1 OJ1254_E07.23 TO:0000326 GR_REF:11089 IC T stay green OJ1254_E07.23|P0515E01.8 protein taxon:39947 20080211 Gramene @@ -449,8 +447,7 @@ GR_protein A9JX09 IRO2 TO:0000495 GR_REF:11089 IC T OsIRO2 BHLH transcription GR_protein A9JX09 IRO2 TO:0000552 GR_REF:11089 IC T OsIRO2 BHLH transcription factor|OsIRO2 protein taxon:39947 20080715 Gramene GR_protein A9JX09 IRO2 TO:0000078 GR_REF:11089 IC T OsIRO2 BHLH transcription factor|OsIRO2 protein taxon:39947 20080715 Gramene GR_protein B6RRX2 SaF TO:0000036 GR_REF:11089 IC T SaF SaF+ protein taxon:39946 20090501 Gramene -GR_protein B6RRX2 SaF TO:0000053 GR_REF:11089 IC T SaF SaF+ protein taxon:39946 20090501 Gramene +GR_protein B6RRX2 SaF TO:0000437 GR_REF:11089 IC T SaF SaF+ protein taxon:39946 20090501 Gramene|TO:cooperl GR_protein B6RRX3 SaM TO:0000036 GR_REF:11089 IC T SaM SaM- protein taxon:39947 20090501 Gramene -GR_protein B6RRX3 SaM TO:0000053 GR_REF:11089 IC T SaM SaM- protein taxon:39947 20090501 Gramene +GR_protein B6RRX3 SaM TO:0000437 GR_REF:11089 IC T SaM SaM- protein taxon:39947 20090501 Gramene|TO:cooperl GR_protein B6RRX4 SaM TO:0000036 GR_REF:11089 IC T SaM SaM+ protein taxon:39946 20090501 Gramene -GR_protein B6RRX4 SaM TO:0000053 GR_REF:11089 IC T SaM SaM+ protein taxon:39946 20090501 Gramene -- 2.34.1