From 47b1e65c376b4662657a54e3059849ca28675bf3 Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Thu, 18 Sep 2025 15:39:56 -0700 Subject: [PATCH] Moving annotations, cleaning up synonyms --- .../peco_gene_Oryza_Gramene.assoc | 54 +++++++++---------- 1 file changed, 26 insertions(+), 28 deletions(-) diff --git a/peco-associations/peco_gene_Oryza_Gramene.assoc b/peco-associations/peco_gene_Oryza_Gramene.assoc index aef0f9f..a5cf7cc 100644 --- a/peco-associations/peco_gene_Oryza_Gramene.assoc +++ b/peco-associations/peco_gene_Oryza_Gramene.assoc @@ -25,11 +25,11 @@ GR_gene GR:0060193 D11 PECO:0007270 GR_REF:5792 IMP E DWARF SHINKANEAIKOKU OR GR_gene GR:0060193 D11 PECO:0007403 GR_REF:5792 IMP E DWARF SHINKANEAIKOKU OR NOHRIN 28 shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430 gene taxon:4530 20121108 Gramene GR_gene GR:0060193 D11 PECO:0007409 GR_REF:5792 IMP E DWARF SHINKANEAIKOKU OR NOHRIN 28 shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430 gene taxon:4530 20121108 Gramene GR_gene GR:0060320 EUI1 PECO:0007403 GR_REF:6122 IMP E ELONGATED UPPERMOST INTERNODE eui1|elongated uppermost internode-1|eui1|elongated uppermost internode-1|LOC_Os05g40384 gene taxon:4530 20121108 Gramene -GR_gene GR:0060366 GH2 PECO:0007048 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene -GR_gene GR:0060366 GH2 PECO:0007199 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene -GR_gene GR:0060366 GH2 PECO:0007254 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene -GR_gene GR:0060366 GH2 PECO:0007266 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene -GR_gene GR:0060366 GH2 PECO:0007403 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene +GR_gene GR:0060366 GH2 PECO:0007048 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene +GR_gene GR:0060366 GH2 PECO:0007199 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene +GR_gene GR:0060366 GH2 PECO:0007254 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene +GR_gene GR:0060366 GH2 PECO:0007266 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene +GR_gene GR:0060366 GH2 PECO:0007403 GR_REF:5652 IMP E GOLD HULL AND INTERNODE 2 OsCAD2|CAD2|Cinnamyl alcohol dehydrogenase|Sinapyl alcohol dehydrogenase|gh2|gold hull and internode-2|LOC_Os02g09490 gene taxon:4530 20121108 Gramene GR_gene GR:0060908 SPL7 PECO:0007403 GR_REF:5883 IMP E SPOTTED LEAF 7 spotted leaf-7|spl7|lrd13|lesion resembling disease-13|lrd13|lesion resembling disease-13|LOC_Os05g45410 gene taxon:4530 20121108 Gramene GR_gene GR:0060261 DU1 PECO:0007226 GR_REF:3313 IMP E DULL ENDOSPERM 1 low amylose content mutant|du1|dull endosperm-1|du1|dull endosperm-1|LOC_Os10g35550 gene taxon:4530 20121108 Gramene GR_gene GR:0060261 DU1 PECO:0007403 GR_REF:3313 IMP E DULL ENDOSPERM 1 low amylose content mutant|du1|dull endosperm-1|du1|dull endosperm-1|LOC_Os10g35550 gene taxon:4530 20121108 Gramene @@ -54,34 +54,34 @@ GR_gene GR:0060897 SLR PECO:0007403 GR_REF:7060 IMP E SLENDER RICE slr|OsGAI|s GR_gene GR:0060995 VP1 PECO:0007105 GR_REF:6978 IMP E VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene GR_gene GR:0060995 VP1 PECO:0007266 GR_REF:6978 IMP E VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene GR_gene GR:0060995 VP1 PECO:0007403 GR_REF:6978 IMP E VIVIPAROUS 1 OsVp1|Vp1|Viviparous-1|Vp1|Viviparous-1|LOC_Os01g68370 gene taxon:4530 20121108 Gramene -GR_gene GR:0061010 WX1 PECO:0007383 GR_REF:4065 IMP E GLUTINOUS ENDOSPERM UDP-glycogen synthase|GBSS|Granule-bound starch synthase|Waxy|chloroplast precursor|glycogen [starch] synthase|Granule-bound glycogen synthase|UDPG-glycogen transglucosylase|uridine diphosphoglucose-glycogen glucosyltransferase|glycogen [starch] synthetase|waxy|Granule-bound glycogen [starch] synthase|UDPG-glycogen synthetase|wx|glutinous endosperm|wx|glutinous endosperm|LOC_Os06g04200 gene taxon:4530 20121108 Gramene -GR_gene GR:0061010 WX1 PECO:0007403 GR_REF:4065 IMP E GLUTINOUS ENDOSPERM UDP-glycogen synthase|GBSS|Granule-bound starch synthase|Waxy|chloroplast precursor|glycogen [starch] synthase|Granule-bound glycogen synthase|UDPG-glycogen transglucosylase|uridine diphosphoglucose-glycogen glucosyltransferase|glycogen [starch] synthetase|waxy|Granule-bound glycogen [starch] synthase|UDPG-glycogen synthetase|wx|glutinous endosperm|wx|glutinous endosperm|LOC_Os06g04200 gene taxon:4530 20121108 Gramene +GR_gene GR:0061010 WX1 PECO:0007383 GR_REF:4065 IMP E GLUTINOUS ENDOSPERM UDP-glycogen synthase|GBSS|Granule-bound starch synthase|Waxy|chloroplast precursor|glycogen [starch] synthase|Granule-bound glycogen synthase|UDPG-glycogen transglucosylase|uridine diphosphoglucose-glycogen glucosyltransferase|glycogen [starch] synthetase|waxy|Granule-bound glycogen [starch] synthase|UDPG-glycogen synthetase|wx|glutinous endosperm|LOC_Os06g04200 gene taxon:4530 20121108 Gramene +GR_gene GR:0061010 WX1 PECO:0007403 GR_REF:4065 IMP E GLUTINOUS ENDOSPERM UDP-glycogen synthase|GBSS|Granule-bound starch synthase|Waxy|chloroplast precursor|glycogen [starch] synthase|Granule-bound glycogen synthase|UDPG-glycogen transglucosylase|uridine diphosphoglucose-glycogen glucosyltransferase|glycogen [starch] synthetase|waxy|Granule-bound glycogen [starch] synthase|UDPG-glycogen synthetase|wx|glutinous endosperm|LOC_Os06g04200 gene taxon:4530 20121108 Gramene GR_gene GR:0061011 XA1 PECO:0007403 GR_REF:456 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 1 RXa1|Xe|Xanthomonas campestris pv. oryzae resistance-1|Xa1|Xa-1|Xa1|Xanthomonas oryzae pv. oryzae resistance-1|Xa-1|Xa1|Xanthomonas oryzae pv. oryzae resistance-1|LOC_Os04g53120 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007048 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007105 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007199 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007266 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007270 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007403 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061015 XA5 PECO:0007404 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene -GR_gene GR:0061021 XA13 PECO:0007145 GR_REF:1527 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 13 Xanthomonas campestris pv. oryzae resistance-13|rXa11|xa13|xa13|Xanthomonas oryzae pv. oryzae resistance-13|xa13|Xanthomonas oryzae pv. oryzae resistance-13 gene taxon:4530 20121108 Gramene -GR_gene GR:0061021 XA13 PECO:0007255 GR_REF:1527 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 13 Xanthomonas campestris pv. oryzae resistance-13|rXa11|xa13|xa13|Xanthomonas oryzae pv. oryzae resistance-13|xa13|Xanthomonas oryzae pv. oryzae resistance-13 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007048 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007105 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007199 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007266 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007270 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007403 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061015 XA5 PECO:0007404 GR_REF:330 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 5 rXa5|xa5|Xanthomonas campestris pv. oryzae resistance-5|xa5|Xanthomonas oryzae pv. oryzae resistance-5|LOC_Os05g01710 gene taxon:4530 20121108 Gramene +GR_gene GR:0061021 XA13 PECO:0007145 GR_REF:1527 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 13 Xanthomonas campestris pv. oryzae resistance-13|rXa11|xa13|xa13|Xanthomonas oryzae pv. oryzae resistance-13| gene taxon:4530 20121108 Gramene +GR_gene GR:0061021 XA13 PECO:0007255 GR_REF:1527 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 13 Xanthomonas campestris pv. oryzae resistance-13|rXa11|xa13|xa13|Xanthomonas oryzae pv. oryzae resistance-13 gene taxon:4530 20121108 Gramene GR_gene GR:0060333 FON1 PECO:0007403 GR_REF:3031 IMP E FLORAL ORGAN NUMBER 1 floral organ number-1|floral organ number-1|LOC_Os06g50340 gene taxon:4530 20121108 Gramene -GR_gene GR:0061178 MSP1 PECO:0007403 GR_REF:10120 IMP E MULTIPLE SPOROCYTE 1 multiple sporocyte|Putative leucin-rich repeat protein kinase|Putative extra sporogenous cells|Msp1|multiple sporogeneous cells-1|Msp1|multiple sporogeneous cells-1|LOC_Os01g68870 gene taxon:4530 20121108 Gramene +GR_gene GR:0061178 MSP1 PECO:0007403 GR_REF:10120 IMP E MULTIPLE SPOROCYTE 1 multiple sporocyte|Putative leucin-rich repeat protein kinase|Putative extra sporogenous cells|Msp1|multiple sporogeneous cells-1|LOC_Os01g68870 gene taxon:4530 20121108 Gramene GR_gene GR:0061179 OSH1 PECO:0007174 GR_REF:3892 IMP E Rice KNOX gene-1 LOC_Os03g51690 gene taxon:4530 20121108 Gramene GR_gene GR:0061179 OSH1 PECO:0007199 GR_REF:3892 IMP E Rice KNOX gene-1 LOC_Os03g51690 gene taxon:4530 20121108 Gramene GR_gene GR:0061179 OSH1 PECO:0007403 GR_REF:3892 IMP E Rice KNOX gene-1 LOC_Os03g51690 gene taxon:4530 20121108 Gramene GR_gene GR:0061182 PLA2 PECO:0007248 GR_REF:11136 IMP E PLASTOCHRON2 plt2|pla2|LHD2|LEAFY HEAD2|LOC_Os01g68000 gene taxon:4530 20121108 Gramene GR_gene GR:0061182 PLA2 PECO:0007255 GR_REF:11136 IMP E PLASTOCHRON2 plt2|pla2|LHD2|LEAFY HEAD2|LOC_Os01g68000 gene taxon:4530 20121108 Gramene GR_gene GR:0061182 PLA2 PECO:0007256 GR_REF:11136 IMP E PLASTOCHRON2 plt2|pla2|LHD2|LEAFY HEAD2|LOC_Os01g68000 gene taxon:4530 20121108 Gramene -GR_gene GR:0061191 sgr PECO:0007226 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene -GR_gene GR:0061191 sgr PECO:0007266 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene -GR_gene GR:0061191 sgr PECO:0007403 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene -GR_gene GR:0060611 PHYA PECO:0007226 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene -GR_gene GR:0060611 PHYA PECO:0007270 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene -GR_gene GR:0060611 PHYA PECO:0007383 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene -GR_gene GR:0060611 PHYA PECO:0007403 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene -GR_gene GR:0061029 XA21 PECO:0007257 GR_REF:18 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 21 RXa19|Xanthomonas campestris pv. oryzae resistance-21|Xa21*|Xa21|Xanthomonas oryzae pv. oryzae resistance-21|Xa21|Xanthomonas oryzae pv. oryzae resistance-21|LOC_Os11g35500 gene taxon:4530 20121108 Gramene +GR_gene GR:0061191 sgr PECO:0007226 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene +GR_gene GR:0061191 sgr PECO:0007266 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene +GR_gene GR:0061191 sgr PECO:0007403 GR_REF:9779 IMP E stay green sgr(t)|OsSGR|staying green during senescence|LOC_Os09g36200 gene taxon:4530 20121108 Gramene +GR_gene GR:0060611 PHYA PECO:0007226 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene +GR_gene GR:0060611 PHYA PECO:0007270 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene +GR_gene GR:0060611 PHYA PECO:0007383 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene +GR_gene GR:0060611 PHYA PECO:0007403 GR_REF:456 IMP E PHYTOCHROME A PHYA*|Phya|Phytochrome-A|LOC_Os03g51030 gene taxon:4530 20121108 Gramene +GR_gene GR:0061029 XA21 PECO:0007257 GR_REF:18 IMP E XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 21 RXa19|Xanthomonas campestris pv. oryzae resistance-21|Xa21*|Xa21|Xanthomonas oryzae pv. oryzae resistance-21|LOC_Os11g35500 gene taxon:4530 20121108 Gramene GR_gene GR:0061060 ZB8 PECO:0007226 GR_REF:456 IMP E PHENYLALANINE AMMONIA-LYASE Phenylalanine ammonia lyase|Phenylalanine ammonia lyase|LOC_Os05g35290 gene taxon:4530 20121108 Gramene GR_gene GR:0061060 ZB8 PECO:0007403 GR_REF:456 IMP E PHENYLALANINE AMMONIA-LYASE Phenylalanine ammonia lyase|Phenylalanine ammonia lyase|LOC_Os05g35290 gene taxon:4530 20121108 Gramene GR_gene GR:0061104 OsAMT1:1 PECO:0007226 GR_REF:10107 IMP E Ammonium transporter-1 LOC_Os04g43070 gene taxon:4530 20121108 Gramene @@ -926,9 +926,7 @@ GR_gene GR:0020282 bhlh144 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-he GR_gene GR:0020285 bhlh147 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 147 basic helix loop helix 147|OsbHLH147|Hypothetical protein OSJNBa0051E21.28|OSJNBa0051E21.28|LOC_Os02g34370 gene taxon:4530 20121108 Gramene GR_gene GR:0020286 bhlh148 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 148 basic helix loop helix 148|OsbHLH148|Putative helix-loop-helix DNA-binding protein|OJ1365_D05.18|LOC_Os03g53020 gene taxon:4530 20121108 Gramene GR_gene GR:0020286 bhlh148 PECO:0007404 GR_REF:11280 IMP E basic/helix-loop-helix 148 basic helix loop helix 148|OsbHLH148|Putative helix-loop-helix DNA-binding protein|OJ1365_D05.18|LOC_Os03g53020 gene taxon:4530 20121108 Gramene -GR_gene GR:0080025 MADS18 PECO:0007248 GR_REF:8348 IMP E MADS box gene 18 OsMADS18|OsMADS2|FDRMADS7|OsMADS28|LOC_Os07g41370 gene taxon:4530 20121108 Gramene -GR_gene GR:0080025 MADS18 PECO:0007255 GR_REF:8348 IMP E MADS box gene 18 OsMADS18|OsMADS2|FDRMADS7|OsMADS28|LOC_Os07g41370 gene taxon:4530 20121108 Gramene -GR_gene GR:0080025 MADS18 PECO:0007403 GR_REF:8348 IMP E MADS box gene 18 OsMADS18|OsMADS2|FDRMADS7|OsMADS28|LOC_Os07g41370 gene taxon:4530 20121108 Gramene +GR_gene GR:0080025 MADS18 PECO:0007248 DOI:10.1104/pp.104.045039 IMP E MADS box gene 18 OsMADS18|OsMADS2|FDRMADS7|OsMADS28|LOC_Os07g41370 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0020287 bhlh149 PECO:0007105 GR_REF:11280 IMP E basic/helix-loop-helix 149 basic helix loop helix 149|OsbHLH149|P0505D12.13|LOC_Os01g64560 gene taxon:4530 20121108 Gramene GR_gene GR:0020287 bhlh149 PECO:0007226 GR_REF:11280 IMP E basic/helix-loop-helix 149 basic helix loop helix 149|OsbHLH149|P0505D12.13|LOC_Os01g64560 gene taxon:4530 20121108 Gramene GR_gene GR:0020287 bhlh149 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 149 basic helix loop helix 149|OsbHLH149|P0505D12.13|LOC_Os01g64560 gene taxon:4530 20121108 Gramene -- 2.34.1