From 492eac9afe6b54f2c6144efbd8793d30ad7223f2 Mon Sep 17 00:00:00 2001
From: rajar <rajar@localhost>
Date: Wed, 2 Nov 2011 20:53:06 +0000
Subject: [PATCH] File removed

svn path=/; revision=203
---
 interpro/RUN_TMHMM.pl | 52 -------------------------------------------
 1 file changed, 52 deletions(-)
 delete mode 100644 interpro/RUN_TMHMM.pl

diff --git a/interpro/RUN_TMHMM.pl b/interpro/RUN_TMHMM.pl
deleted file mode 100644
index 6aaf9a2..0000000
--- a/interpro/RUN_TMHMM.pl
+++ /dev/null
@@ -1,52 +0,0 @@
-#!/usr/bin/perl
-#use strict;
-# create the variables
-# keys is $gene_header, values is $seq
-my %seq_hash; 
-my $gene_header;
-my $saeq;
-$file = "/lemma/Rajani/iprscan/Toly_new.fa";   
-open(in_file,$file);
-   
-while(<in_file>) 
-{
-        my $line = $_;
-        chomp $line;
-
-
-        if($line =~ /^\>/)
-          {
-               if(defined($gene_header))
-             {
-                  $seq_hash{$gene_header} = $seq;
-             }
-                  $gene_header = $line;
-                  $seq = "";
-         }
-      else
-            {
-                $seq = "$seq"."$line";
-            }
-            $seq_hash{$gene_header} = $seq;
-
-       }
-   
-#foreach $key(%seq_hash)
-#{
-#print "Gene is $key  and the sequence is  $seq_hash{$gene_header} \n";
-#}
-
-while (($key, $value) = each(%seq_hash))
-{
-    # print $key."\n".$value."\n";
-
-              open(FILE1,">Toly.seq") || die("Cannot Open File");
-              print FILE1 "$key\n";
-              print FILE1 "$value";
-
-$status7 = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm Toly.seq >> Toly_tmhmmdata.txt");
-
-
-}
-
-
-- 
2.34.1