From 50544f60732b1ec9958e65527ae84da418034546 Mon Sep 17 00:00:00 2001 From: preecej Date: Wed, 2 Apr 2014 20:40:17 +0000 Subject: [PATCH] now generates optional reactome projection output files svn path=/; revision=567 --- Personnel/preecej/python_singletons/incomparanoid.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Personnel/preecej/python_singletons/incomparanoid.py b/Personnel/preecej/python_singletons/incomparanoid.py index 18576a6..256b40d 100755 --- a/Personnel/preecej/python_singletons/incomparanoid.py +++ b/Personnel/preecej/python_singletons/incomparanoid.py @@ -286,7 +286,7 @@ def write_reactome_files(dict_map, reactome_gene_protein_path, reactome_projecti REACTOME_GENE_PROTEIN_OUT_FILE = open(reactome_gene_protein_path,'w') REACTOME_PROJECTION_OUT_FILE = open(reactome_projection_path,'w') for k, v_list in sorted(dict_map.iteritems()) : - REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(v_list) + "\n") + REACTOME_PROJECTION_OUT_FILE.write(k + "\t" + " ".join(map(lambda x: x.replace(x, (projection_prefix if projection_prefix else "") + x), v_list)) + "\n") for v in v_list : if v not in val_set : val_set.add(v) -- 2.34.1