From 6120f25a0ad8bec61012ca0c119a4fb838319797 Mon Sep 17 00:00:00 2001 From: preecej Date: Thu, 6 Jun 2013 22:29:17 +0000 Subject: [PATCH] Updated for AraCyc 10 run svn path=/; revision=485 --- .../reactome_chebi_mapping/reactome_chebi_mapping.pl | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl b/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl index cf6f4c9..9f25b33 100755 --- a/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl +++ b/Personnel/preecej/perl_singletons/reactome_chebi_mapping/reactome_chebi_mapping.pl @@ -15,7 +15,7 @@ use strict; # # CHEBI OBO file (preset) # -# Reactome file (preset, provided by Guanming Wu) +# Reactome file (preset, template provided by Guanming Wu) # (Header) [ReactomeID] [Compound_Name] [CAS] [LIGAND] [Cyc] # (Row) 923893 S-adenosyl-L-methionine 29908-03-0 C00019 S-ADENOSYLMETHIONINE ** the '-' (dash) symbol will be applied to any empty columns # @@ -42,8 +42,8 @@ use GO::Parser; # --------------------------------------------------------------------------- # set paths to data files -my $data_path = "/home/preecej/Documents/projects/reactome/reactome_to_chebi_mapping/AraCyc/gk_central_041811/no_synonyms/"; -my $chebi_obo_file = "../../chebi_v78.obo"; +my $data_path = "/home/preecej/Documents/projects/reactome/reactome_to_chebi_mapping/AraCyc/aracyc_10/no_synonyms/"; +my $chebi_obo_file = "../../chebi_v104.obo"; my $reactome_file = "AraReferenceMolecules.txt"; my $mapped_output_file = "1.2_reactome_chebi_mapping_complete.txt"; my $sorted_output_file = "1.2_reactome_chebi_mapping_complete_sorted.txt"; -- 2.34.1