From 7e12299111e9eb55dc19a32f1a742493ce37eace Mon Sep 17 00:00:00 2001 From: cooperl Date: Thu, 17 Mar 2016 20:12:27 +0000 Subject: [PATCH] Fixed typo in the GR_REF columns. svn path=/; revision=703 --- .../GO_ontology_IMP_gene_O.sativa.assoc | 8 ++-- .../po_ontology_IMP_gene_oryza_poc.assoc | 42 +++++++++---------- 2 files changed, 25 insertions(+), 25 deletions(-) diff --git a/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_O.sativa.assoc b/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_O.sativa.assoc index 1084d0f..4daaaa1 100644 --- a/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_O.sativa.assoc +++ b/go-associations/Test_PPPP_GO/GO_ontology_IMP_gene_O.sativa.assoc @@ -1,6 +1,6 @@ !gaf-version: 2.0 !DB DB-Object_ID DB_Object_Symbol GO term (Qualifier) GO ID PMID Evidence with/from Aspect DB_Object_Name Synonym DB_Object_Type Taxon Date Assigned_by Annotation_Extension Gene Product Form ID -!GR_gene DSG1 growth GO:0040007 IMP BP Os09g0434200 Delayed Seed Germination gene taxon:4530 20150406 Ethan Johnson +!GR_gene DSG1 GR_REF: GO:0040007 IMP BP Os09g0434200 Delayed Seed Germination gene taxon:4530 20150406 Ethan Johnson !GR_gene DSG1 seed germination GO:0009845 IMP BP Os09g0434200 Delayed Seed Germination gene taxon:4530 20150406 Ethan Johnson !GR_gene HD3A vegetative to reproductive phase transition of meristem GO:0010228 PMID: 26096631 IMP BP Os06g0157700 Heading Date gene taxon:4530 20150406 Ethan Johnson !GR_gene PLA1 inflorescence development GO:0010229 PMID: 25243048 IMP BP Os10g0403001 PLASTOCHRON 1 gene taxon:4530 20150410 Ethan Johnson @@ -28,8 +28,8 @@ GR_gene 20145 TDR stamen development GO:0048443 PMID:16896230 IMP BP Os02g01205 GR_gene 60058 APO1 flower morphogenesis GO:0048439 PMID:15950602 IMP BP Os06g0665400 Aberrant Panicle Organization gene taxon:4530 20150403 Ethan Johnson GR_gene 60058 APO1 inflorescence phyllotactic patterning GO:0090643 PMID:15950602 IMP BP Os06g0665400 Aberrant Panicle Organization gene taxon:4530 20150403 Ethan Johnson GR_gene 60068 BC1 cell wall GO:0005618 PMID:12953108 IMP CC Os03g0416200 BRITTLE CULM 1 gene taxon:4530 20150403 Ethan Johnson -GR_gene 60070 BC3 inflorescence development GO:0010229 GR_gene:5651 IMP BP Os02g0738900 BRITTLE CULM 3 gene taxon:4530 20150403 Ethan Johnson -GR_gene 60070 BC3 inflorescence development GO:0010229 GR_gene:5651 IMP BP Os02g0738900 BRITTLE CULM 3 gene taxon:4530 20150406 Ethan Johnson +GR_gene 60070 BC3 inflorescence development GO:0010229 GR_REF:5651 IMP BP Os02g0738900 BRITTLE CULM 3 gene taxon:4530 20150403 Ethan Johnson +GR_gene 60070 BC3 inflorescence development GO:0010229 GR_REF:5651 IMP BP Os02g0738900 BRITTLE CULM 3 gene taxon:4530 20150406 Ethan Johnson GR_gene 60213 D35 gibberellin biosynthetic process GO:0009686 PMID:15075394 IMP BP Os06g0569500 DWARF TANGINBOZU gene taxon:4530 20150406 Ethan Johnson GR_gene 60233 DL biosynthetic process GO:0009058 PMID:14729915 IMP BP Os03g0215200 Drooping Leaf gene taxon:4530 20150406 Ethan Johnson GR_gene 60233 DL carpel development GO:0048440 PMID:14729915 IMP BP Os03g0215200 Drooping Leaf gene taxon:4530 20150406 Ethan Johnson @@ -38,7 +38,7 @@ GR_gene 60842 SD1 cell division GO:0051301 PMID:11961544 IMP BP Os01g0883800 SE GR_gene 60842 SD1 gibberellin 20-oxidase activity GO:0045544 PMID:11961544 IMP MF Os01g0883800 SEMIDWARF 1 gene taxon:4530 20150413 Ethan Johnson GR_gene 60864 SE5 vegetative to reproductive phase transition of meristem GO:0010228 PMID:10849355 IMP BP Os06g0603000 Photosensitivity gene taxon:4530 20150413 Ethan Johnson GR_gene 60882 SHL4 root development GO:0048364 PMID:10409508 IMP BP Os03g0449200 SHOOTLESS 4 gene taxon:4530 20150413 Ethan Johnson -GR_gene 60883 SHO1 cell division GO:0051301 GR_gene:1477 IMP BP Os04g0509300 SHOOT ORGANIZATION 1 gene taxon:4530 20150413 Ethan Johnson +GR_gene 60883 SHO1 cell division GO:0051301 GR_REF:1477 IMP BP Os04g0509300 SHOOT ORGANIZATION 1 gene taxon:4530 20150413 Ethan Johnson GR_gene 61178 MSP1 microsporocyte differentiation GO:0010480 PMID:12897248 IMP BP Os01g0917500 MULTIPLE SPOROCYTE 1 gene taxon:4530 20150410 Ethan Johnson GR_gene 61182 PLA2 leaf development GO:0048366 PMID:16461585 IMP BP Os01g0907900 PLASTOCHRON2 gene taxon:4530 20150410 Ethan Johnson GR_gene 61182 PLA2 leaf formation GO:0010338 PMID:16461585 IMP BP Os01g0907900 PLASTOCHRON2 gene taxon:4530 20150410 Ethan Johnson diff --git a/po-associations/po_ontology_IMP_gene_oryza_poc.assoc b/po-associations/po_ontology_IMP_gene_oryza_poc.assoc index 2d35f81..ba6eab0 100644 --- a/po-associations/po_ontology_IMP_gene_oryza_poc.assoc +++ b/po-associations/po_ontology_IMP_gene_oryza_poc.assoc @@ -20,10 +20,10 @@ GR_gene 0060068 BC1 PO:0007089 PMID:12953108 IMP G BRITTLE CULM 1 gene taxon: GR_gene 0060068 BC1 PO:0007109 PMID:12953108 IMP G BRITTLE CULM 1 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060068 BC1 PO:0007006 PMID:12953108 IMP G BRITTLE CULM 1 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060068 BC1 PO:0007023 PMID:12953108 IMP G BRITTLE CULM 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060070 BC3 PO:0009047 GR_gene:5651 IMP A BRITTLE CULM 3 gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060070 BC3 PO:0007041 GR_gene:5651 IMP G BRITTLE CULM 3 gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060073 BC6 PO:0000003 GR_gene:5933 IMP A BRITTLE CULM 6 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060073 BC6 PO:0007131 GR_gene:5933 IMP G BRITTLE CULM 6 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060070 BC3 PO:0009047 GR_REF:5651 IMP A BRITTLE CULM 3 gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060070 BC3 PO:0007041 GR_REF:5651 IMP G BRITTLE CULM 3 gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060073 BC6 PO:0000003 GR_REF:5933 IMP A BRITTLE CULM 6 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060073 BC6 PO:0007131 GR_REF:5933 IMP G BRITTLE CULM 6 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080018 BLE3 PO:0000003 PMID:16808934 IMP A BRASSINOLIDE ENHANCED GENE 3 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080018 BLE3 PO:0006341 PMID:16808934 IMP A BRASSINOLIDE ENHANCED GENE 3 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080018 BLE3 PO:0025025 PMID:16808934 IMP A BRASSINOLIDE ENHANCED GENE 3 gene taxon:4530 20130422 POC:Laurel_Cooper @@ -43,12 +43,12 @@ GR_gene 0060184 D1 PO:0009025 PMID:12237405 IMP A dwarf-1 gene taxon:4530 20 GR_gene 0060184 D1 PO:0009039 PMID:12237405 IMP A dwarf-1 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060184 D1 PO:0009047 PMID:12237405 IMP A dwarf-1 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060184 D1 PO:0009049 PMID:12237405 IMP A dwarf-1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0000003 GR_gene:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0005001 GR_gene:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0009006 GR_gene:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0009049 GR_gene:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0007073 GR_gene:5792 IMP G DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060192 D10 PO:0007130 GR_gene:5792 IMP G DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0000003 GR_REF:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0005001 GR_REF:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0009006 GR_REF:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0009049 GR_REF:5792 IMP A DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0007073 GR_REF:5792 IMP G DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060192 D10 PO:0007130 GR_REF:5792 IMP G DWARF KIKEIBANSHINRIKI gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060193 D11 PO:0009001 PMID:15705958 IMP A DWARF SHINKANEAIKOKU OR NOHRIN 28 gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060193 D11 PO:0009006 PMID:15705958 IMP A DWARF SHINKANEAIKOKU OR NOHRIN 28 gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060193 D11 PO:0025500 PMID:15705958 IMP G DWARF SHINKANEAIKOKU OR NOHRIN 28 gene taxon:4530 20130421 POC:Laurel_Cooper @@ -224,11 +224,11 @@ GR_gene 0060882 SHL4 PO:0020033 PMID:10409508 IMP A SHOOTLESS 4 gene taxon:45 GR_gene 0060882 SHL4 PO:0020036 PMID:10409508 IMP A SHOOTLESS 4 gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060882 SHL4 PO:0020110 PMID:10409508 IMP A SHOOTLESS 4 gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060882 SHL4 PO:0020148 PMID:10409508 IMP A SHOOTLESS 4 gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060883 SHO1 PO:0020148 GR_gene:1477 IMP A SHOOT ORGANIZATION 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060883 SHO1 PO:0001050 GR_gene:1477 IMP G SHOOT ORGANIZATION 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060936 SL1 PO:0000003 GR_gene:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060936 SL1 PO:0009029 GR_gene:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper -GR_gene 0060936 SL1 PO:0009030 GR_gene:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060883 SHO1 PO:0020148 GR_REF:1477 IMP A SHOOT ORGANIZATION 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060883 SHO1 PO:0001050 GR_REF:1477 IMP G SHOOT ORGANIZATION 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060936 SL1 PO:0000003 GR_REF:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060936 SL1 PO:0009029 GR_REF:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper +GR_gene 0060936 SL1 PO:0009030 GR_REF:6472 IMP A STAMENLESS 1 gene taxon:4530 20130421 POC:Laurel_Cooper GR_gene 0060897 SLR PO:0000003 PMID:11340177 IMP A SLENDER RICE gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060897 SLR PO:0005005 PMID:11340177 IMP A SLENDER RICE gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0060897 SLR PO:0009002 PMID:11340177 IMP A SLENDER RICE gene taxon:4530 20130422 POC:Laurel_Cooper @@ -237,12 +237,12 @@ GR_gene 0060897 SLR PO:0025025 PMID:11340177 IMP A SLENDER RICE gene taxon:45 GR_gene 0080036 SNB PO:0000003 PMID:17144896 IMP A SUPERNUMERARY BRACT GENE gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080036 SNB PO:0001083 PMID:17144896 IMP G SUPERNUMERARY BRACT GENE gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080036 SNB PO:0009055 PMID:17144896 IMP A SUPERNUMERARY BRACT GENE gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0006321 GR_gene:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0006322 GR_gene:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0009049 GR_gene:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0009051 GR_gene:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0020122 GR_gene:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper -GR_gene 0060900 SP1 PO:0001083 GR_gene:1712 IMP G SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0006321 GR_REF:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0006322 GR_REF:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0009049 GR_REF:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0009051 GR_REF:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0020122 GR_REF:1712 IMP A SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper +GR_gene 0060900 SP1 PO:0001083 GR_REF:1712 IMP G SHORT PANICLE 1 gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080031 SPK PO:0000003 PMID:8325505 IMP A seed-specific protein kinase gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080031 SPK PO:0025067 PMID:8325505 IMP A seed-specific protein kinase gene taxon:4530 20130422 POC:Laurel_Cooper GR_gene 0080031 SPK PO:0001170 PMID:8325505 IMP G seed-specific protein kinase gene taxon:4530 20130422 POC:Laurel_Cooper -- 2.34.1