From 84d4f593d506b2bd5fe62e432b85eb916bb7fca0 Mon Sep 17 00:00:00 2001
From: elserj <elserj@localhost>
Date: Mon, 16 Feb 2015 23:56:25 +0000
Subject: [PATCH] T.cacao genes <=> symbols

svn path=/; revision=610
---
 interactome_scripts/find_species.pl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index d7a7761..c608f1a 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -577,7 +577,7 @@ sub find_gene {
         $gene = $transcript;
 	}elsif ($species eq "Theobroma_cacao") {
 		my ($gene_id,$transcript) = split(/\|/,$gene_header);
-		$gene = $gene_id;
+		$gene = $transcript;
 	}elsif ($species eq "Tolypocladium_inflatum") {
 		$gene = $gene_header;
 	}elsif ($species eq "Trichodesmium_erythraeum") {
@@ -856,7 +856,7 @@ sub find_gene_synonym {
         $synonym = "$peptide,$gene_id";
 	}elsif ($species eq "Theobroma_cacao") {
 		my ($gene_id,$transcript) = split(/\|/,$gene_header);
-		$synonym = $transcript;
+		$synonym = $gene_id;
 	}elsif ($species eq "Trichodesmium_erythraeum") {
 		my ($peptide,$temp,$chrom,$gene_id,$transcript,$gene_type,$transcript_type) = split(/\s/,$gene_header);
         $transcript =~ s/transcript\://;
-- 
2.34.1