From 920a0ab4b4342f7a27c8aa6f754093c40a3af87b Mon Sep 17 00:00:00 2001 From: cooperl09 Date: Tue, 23 Sep 2025 13:49:17 -0700 Subject: [PATCH] Moving annotations --- peco-associations/peco_gene_Oryza_Gramene.assoc | 8 ++------ peco-associations/peco_protein_Oryza_Gramene.assoc | 3 +-- 2 files changed, 3 insertions(+), 8 deletions(-) diff --git a/peco-associations/peco_gene_Oryza_Gramene.assoc b/peco-associations/peco_gene_Oryza_Gramene.assoc index a5cf7cc..cadfb1f 100644 --- a/peco-associations/peco_gene_Oryza_Gramene.assoc +++ b/peco-associations/peco_gene_Oryza_Gramene.assoc @@ -657,13 +657,9 @@ GR_gene GR:0080006 RTS PECO:0007248 GR_REF:11264 IMP E rice tapetum-specific R GR_gene GR:0080006 RTS PECO:0007255 GR_REF:11264 IMP E rice tapetum-specific RTS2|LOC_Os01g70440 gene taxon:4530 20121108 Gramene GR_gene GR:0080006 RTS PECO:0007269 GR_REF:11264 IMP E rice tapetum-specific RTS2|LOC_Os01g70440 gene taxon:4530 20121108 Gramene GR_gene GR:0080007 UDT1 PECO:0007248 GR_REF:11269 IMP E undeveloped Tapetum1 Udt1|LOC_Os07g36460 gene taxon:4530 20121108 Gramene -GR_gene GR:0080007 UDT1 PECO:0007255 GR_REF:11269 IMP E undeveloped Tapetum1 Udt1|LOC_Os07g36460 gene taxon:4530 20121108 Gramene -GR_gene GR:0080009 Lsi1 PECO:0007048 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene -GR_gene GR:0080009 Lsi1 PECO:0007357 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene -GR_gene GR:0080009 Lsi1 PECO:0007255 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene GR_gene GR:0080009 Lsi1 PECO:0007256 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene -GR_gene GR:0080009 Lsi1 PECO:0007403 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene -GR_gene GR:0080009 Lsi1 PECO:0007404 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene +GR_gene GR:0080009 Lsi1 PECO:0007235 GR_REF:11101 IMP E Low silicon rice 1 LOC_Os02g51110 gene taxon:4530 20121108 Gramene + GR_gene GR:0020194 bhlh56 PECO:0007226 GR_REF:11280 IMP E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene GR_gene GR:0020194 bhlh56 PECO:0007254 GR_REF:11280 IMP E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene GR_gene GR:0020194 bhlh56 PECO:0007266 GR_REF:11280 IMP E basic/helix-loop-helix 56 P0431G06.12|basic helix loop helix 56|OsbHLH056|OsbHLH56|BHLH transcription factor-like|LOC_Os01g72370 gene taxon:4530 20121108 Gramene diff --git a/peco-associations/peco_protein_Oryza_Gramene.assoc b/peco-associations/peco_protein_Oryza_Gramene.assoc index c99c947..13087e2 100644 --- a/peco-associations/peco_protein_Oryza_Gramene.assoc +++ b/peco-associations/peco_protein_Oryza_Gramene.assoc @@ -97,9 +97,8 @@ GR_protein Q6W5F5 Q6W5F5 PECO:0007269 GR_REF:11089 IC E Flowering time control GR_protein Q6WQT6 Q6WQT6 PECO:0007256 GR_REF:11148 TAS E Flowering time control protein isoform rFCA-1 FCA, FCA-1 protein taxon:39947 20060831 Gramene GR_protein Q6WQT6 Q6WQT6 PECO:0007269 GR_REF:11148 TAS E Flowering time control protein isoform rFCA-1 FCA, FCA-1 protein taxon:39947 20060831 Gramene GR_protein Q6YZ10 P0473D02.15 PECO:0007069 GR_REF:11382 IMP E SPINDLY OJ1368_G08.30|OsSPY protein taxon:39947 20070126 Gramene -GR_protein Q6Z2T3 LSI1 PECO:0007357 GR_REF:11101 IMP E Silicon transporter LSI1 low silicon protein 1 protein taxon:39947 20060831 Gramene +GR_protein Q6Z2T3 LSI1 PECO:0007235 GR_REF:11101 IMP E Silicon transporter LSI1 low silicon protein 1 protein taxon:39947 20060831 Gramene GR_protein Q6Z2T3 LSI1 PECO:0007256 GR_REF:11101 IMP E Silicon transporter LSI1 low silicon protein 1 protein taxon:39947 20060831 Gramene -GR_protein Q6Z2T3 LSI1 PECO:0007255 GR_REF:11101 TAS E Silicon transporter LSI1 low silicon protein 1 protein taxon:39947 20060831 Gramene GR_protein Q6Z5I0 CPS2 PECO:0007255 GR_REF:11073 IC E ent-copalyl diphosphate synthase 2 OsCPS2|OsCPSL1|P0689H05.16|Putative kaurene synthase A|cps2 protein taxon:39947 20060831 Gramene GR_protein Q6Z5J6 KS5 PECO:0007255 GR_REF:11089 IC E Putative ent-kaurene synthase B P0689H05.20 protein taxon:39947 20080220 Gramene GR_protein Q6Z5M0 IAA8 PECO:0007269 GR_REF:11066 ISS E Auxin-responsive protein IAA8 Auxin-responsive protein IAA8|Hypothetical protein P0685G12.16-2|Indoleacetic acid-induced protein 8|OsIAA8 protein taxon:39946 20060831 Gramene -- 2.34.1