From 9f2500b610b324e84b93706d869ec922fd1ece37 Mon Sep 17 00:00:00 2001 From: elserj Date: Thu, 31 Dec 2015 02:14:31 +0000 Subject: [PATCH] Added PMID to column 6 svn path=/; revision=619 --- .../TO_IMP_gene_M.truncatula.assoc | 276 +++++----- .../TO_IMP_gene_S.lycopersicum.assoc | 404 +++++++------- .../Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc | 494 +++++++++--------- 3 files changed, 587 insertions(+), 587 deletions(-) diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc index 54af922..bf6006e 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_M.truncatula.assoc @@ -1,138 +1,138 @@ -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -LIS ABE72958.1 CPK3 root nodule number TO:0000900 25774204 IMP T ABE72958.1 Increased number of root nodules gene taxon:3880 20150706 Ethan Johnson -LIS ADC33495.1 VPY 25774204 IMP ADC33495.1 Aborted mycorrhizae formation gene taxon:3880 20150706 Ethan Johnson -LIS ADC33495.1 VPY 25774204 IMP ADC33495.1 Rhizobial Infection thread abnormal gene taxon:3880 20150706 Ethan Johnson -LIS ADC33495.1 VPY root nodule number TO:0000900 25774204 IMP T ADC33495.1 root nodulation decreased gene taxon:3880 20150706 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 Ovules exposed by unfused carpel edges gene taxon:3880 20150702 Ethan Johnson -!!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 abnomal ovules gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 either sepal-like or petal-like structures gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fewer ovules gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 fused whorl of stamens and petals gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 seed pods absent gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small carpel gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 small flowers gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 stigma sometimes absent gene taxon:3880 20150702 Ethan Johnson -!LIS AFI56799.1 NAM 25774204 IMP AFI56799.1 style sometimes absent gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM carpel anatomy and morphology trait TO:0006012 25774204 IMP T AFI56799.1 abnormal carpel gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM cotyledon anatomy and morphology trait TO:0000749 25774204 IMP T AFI56799.1 fused cotyledons gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM embryo shape TO:0000193 25774204 IMP T AFI56799.1 cylindrical embryos gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM female sterility TO:0000358 25774204 IMP T AFI56799.1 sterile carpels gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM male sterility TO:0000437 25774204 IMP T AFI56799.1 sterile stamens gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM shoot apical meristem development TO:0006020 25774204 IMP T AFI56799.1 aborted shoot apical meristem gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM stamen anatomy and morphology trait TO:0000215 25774204 IMP T AFI56799.1 abnormal stamen gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM trichome anatomy and morphology trait TO:0000911 25774204 IMP T AFI56799.1 abnormal carpel trichomes gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T AFI56799.1 fused leaflets gene taxon:3880 20150702 Ethan Johnson -LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T AFI56799.1 malformed juvenile vascular leaves gene taxon:3880 20150702 Ethan Johnson -LIS CAD48198.1 ENOD40 tissue development trait TO:0006015 25774204 IMP T CAD48198.1 Abnormal tissue development gene taxon:3880 20150706 Ethan Johnson -!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle formation decreased gene taxon:3880 20150706 Ethan Johnson -!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Arbuscle structure normal gene taxon:3880 20150706 Ethan Johnson -!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 Reduced root Jasmonic Acid levels gene taxon:3880 20150706 Ethan Johnson -!LIS CAI29046.1 MtAOC 25774204 IMP CAI29046.1 mycorrhizae delayed colonization gene taxon:3880 20150706 Ethan Johnson -!LIS CAR57918.1 MtCCD1 25774204 IMP CAR57918.1 Degenerate arbuscles gene taxon:3880 20150706 Ethan Johnson -LIS CAR57918.1 MtCCD1 carotene content TO:0000289 25774204 IMP T CAR57918.1 Apocarotenoid levels abnormal in roots gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr1g056530 HAP2.1 25774204 IMP Medtr1g056530 nonfunctional root nodules gene taxon:3880 20150706 Ethan Johnson -LIS Medtr1g056530 HAP2.1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr1g056530 small root nodules gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 aborted infection threads gene taxon:3880 20150702 Ethan Johnson! -!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr1g090320 LIN 25774204 IMP Medtr1g090320 nodule development arrested gene taxon:3880 20150702 Ethan Johnson -LIS Medtr1g101600 CBF4 root length TO:0000227 25774204 IMP T Medtr1g101600 Higher Primary root length gene taxon:3880 20150706 Ethan Johnson -LIS Medtr1g101600 CBF4 salt tolerance TO:0006001 25774204 IMP T Medtr1g101600 Salt-stress tolerance increased gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr2g005870 DMI1 25774204 IMP Medtr2g005870 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson -LIS Medtr2g005870 DMI1 root nodule number TO:0000900 25774204 IMP T Medtr2g005870 root nodules absent gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Increased isoflavones in roots gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr2g035020 GT3 (UGT73F3) 25774204 IMP Medtr2g035020 Reduced saponins in roots gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) germination rate TO:0000430 25774204 IMP T Medtr2g035020 Seed germination delayed gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) plant structure growth and development trait TO:0000928 25774204 IMP T Medtr2g035020 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) root branching TO:0000257 25774204 IMP T Medtr2g035020 Roots less branched gene taxon:3880 20150706 Ethan Johnson -LIS Medtr2g035020 GT3 (UGT73F3) root length TO:0000227 25774204 IMP T Medtr2g035020 Roots short gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr3g021350 cyp716A12 25774204 IMP Medtr3g021350 Impaired hemolytic saponin synthesis gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g021350 cyp716A12 plant structure growth and development trait TO:0000928 25774204 IMP T Medtr3g021350 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g098560 SGL1 flower anatomy and morphology trait TO:0000499 25774204 IMP T Medtr3g098560 fused flowers gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g098560 SGL1 leaf shape TO:0000492 25774204 IMP T Medtr3g098560 simple, unifoliate (not compound) leaves gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g098560 SGL1 petiole length TO:0000766 25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Ethan Johnson! -!LIS Medtr3g099620 bHLH1 25774204 IMP Medtr3g099620 Nodulation delayed gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g099620 bHLH1 plant organ growth and development trait TO:0000927 25774204 IMP T Medtr3g099620 reduced growth of aboveground plant organs gene taxon:3880 20150706 Ethan Johnson -LIS Medtr3g099620 bHLH1 vascular bundle development trait TO:0020109 25774204 IMP T Medtr3g099620 Assymetrical development of nodule vascular bundles gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 Decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106420 FLOT2 25774204 IMP Medtr3g106420 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 lateral root length TO:0001012 25774204 IMP T Medtr3g106420 Long primary lateral roots gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 root nodule number 25774204 IMP Medtr3g106420 More no-nodule plants gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 root nodule number TO:0000900 25774204 IMP T Medtr3g106420 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106420 FLOT2 seminal root length TO:0000586 25774204 IMP T Medtr3g106420 Decreased primary root length gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr3g106430 FLOT4 25774204 IMP Medtr3g106430 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 root nodule number TO:0000900 25774204 IMP T Medtr3g106430 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106430 FLOT4 root number TO:0000084 25774204 IMP T Medtr3g106430 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106480 FLOT3 root length TO:0000227 25774204 IMP T Medtr3g106480 Decreased root length gene taxon:3880 20150702 Ethan Johnson -LIS Medtr3g106480 FLOT3 root weight TO:0000279 25774204 IMP T Medtr3g106480 Reduced root weight gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 Wild type nodulation response to ethylene gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation occurs in abnormal places on root gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g070970 SUNN 25774204 IMP Medtr4g070970 nodulation under high nitrogen gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g070970 SUNN root length TO:0000227 25774204 IMP T Medtr4g070970 short roots gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g070970 SUNN root nodule number TO:0000900 25774204 IMP T Medtr4g070970 increased number of root nodules gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr4g084140 MtNAP1 25774204 IMP Medtr4g084140 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 enzyme activity trait TO:0000599 25774204 IMP T Medtr4g084140 low nitrogenase activity in nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr4g084140 root nodules undeveloped and small gene taxon:3880 20150702 Ethan Johnson -LIS Medtr4g084140 MtNAP1 root nodule number TO:0000900 25774204 IMP T Medtr4g084140 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr5g011250 ANS 25774204 IMP Medtr5g011250 Reduced seed Oligomeric proanthocyanidin levels gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g011250 ANS anthocyanin content TO:0000071 25774204 IMP T Medtr5g011250 Reduced leaf Anthocyanin levels gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Distal lateral leaflets develop similarly to terminal leaflets gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr5g014400 PALM1 25774204 IMP Medtr5g014400 Rachis length decreased gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 25774204 IMP T Medtr5g014400 Forms dissected leaves gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 25774204 IMP T Medtr5g014400 Palmate-like pentafoliate leaves gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g014400 PALM1 petiole length TO:0000766 25774204 IMP T Medtr5g014400 Petiole length increased gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 Infection thread aborted gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr5g019040 NFP 25774204 IMP Medtr5g019040 root nodules absent gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr5g022030 CDPK1 25774204 IMP Medtr5g022030 mycorrhizal symbioses decreased gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g022030 CDPK1 root cortical cell length TO:0020108 25774204 IMP T Medtr5g022030 reduced root cell length gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g022030 CDPK1 root hair length TO:0002665 25774204 IMP T Medtr5g022030 reduced root hair length gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g022030 CDPK1 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr5g022030 root nodulation decreased gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited mycorrhizal infection gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr5g026850 CYCLOPS 25774204 IMP Medtr5g026850 inhibited rhizobial infection gene taxon:3880 20150706 Ethan Johnson -LIS Medtr5g026850 CYCLOPS root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr5g026850 arrested nodule development gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr5g030920 nork 25774204 IMP Medtr5g030920 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g030920 nork root nodule number TO:0000900 25774204 IMP T Medtr5g030920 Root nodules absent in presence of Nod factor gene taxon:3880 20150701 Ethan Johnson -LIS Medtr5g030920 nork root nodule number TO:0000900 25774204 IMP T Medtr5g030920 Root nodules absent in presence of the rhizobial Sinorhizobium meliloti gene taxon:3880 20150701 Ethan Johnson -!LIS Medtr5g086120 LYK4 25774204 IMP Medtr5g086120 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g086120 LYK4 root nodule number TO:0000900 25774204 IMP T Medtr5g086120 root nodules absent gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr5g086130 LYK3 25774204 IMP Medtr5g086130 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson -LIS Medtr5g086130 LYK3 root nodule number TO:0000900 25774204 IMP T Medtr5g086130 root nodules absent gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr6g071190 FCL1 25774204 IMP Medtr6g071190 Leaf rachis malformed gene taxon:3880 20150702 Ethan Johnson -LIS Medtr6g071190 FCL1 petiole length TO:0000766 25774204 IMP T Medtr6g071190 Short petiole gene taxon:3880 20150702 Ethan Johnson -LIS Medtr6g071190 FCL1 vascular leaf anatomy and morphology trait TO:0000419 25774204 IMP T Medtr6g071190 Fused leaflets gene taxon:3880 20150702 Ethan Johnson -LIS Medtr7g084970 FTa1 flowering time trait TO:0002616 25774204 IMP T Medtr7g084970 Delayed flowering gene taxon:3880 20150702 Ethan Johnson -LIS Medtr7g085040 FTc flower development trait TO:0000622 25774204 IMP T Medtr7g085040 Flower development normal under long days gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Rhizobial colonization blocked gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g085810 ERN 25774204 IMP Medtr7g085810 Signal transduction for nodulation blocked gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced autocatylic ethylene production gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 Reduced inhibition of root growth in response to application of exogenous cytokinin benzyl adenine gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased pathogenic fungal damage gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 increased persistant rhizobia infection gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr7g101410 Skl1 25774204 IMP Medtr7g101410 radial swelling of primary infection zone gene taxon:3880 20150702 Ethan Johnson -LIS Medtr7g101410 Skl1 gravity response trait TO:0002693 25774204 IMP T Medtr7g101410 No loss of geotropism gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 25774204 IMP T Medtr7g101410 lack of inhibition of hypocotyl growth gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 25774204 IMP T Medtr7g101410 reduced apical hook angle gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 root development trait TO:0000656 25774204 IMP T Medtr7g101410 lack of inhibition of root growth gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 root hair length TO:0002665 25774204 IMP T Medtr7g101410 reduced ectopic root hairs gene taxon:3880 20150706 Ethan Johnson -LIS Medtr7g101410 Skl1 root nodule number TO:0000900 25774204 IMP T Medtr7g101410 Absence of nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr7g101410 Skl1 seedling cotyledon size TO:0000752 25774204 IMP T Medtr7g101410 large cotyledons gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr8g020200 ELF4 25774204 IMP Medtr8g020200 Circadian rhythm abnormal gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr8g043970 DMI3 25774204 IMP Medtr8g043970 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g043970 DMI3 root nodule number TO:0000900 25774204 IMP T Medtr8g043970 root nodule absent gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g058380 CDC16 auxin sensitivity TO:0000163 25774204 IMP T Medtr8g058380 Reduced auxin sensitivity by roots gene taxon:3880 20150706 Ethan Johnson -LIS Medtr8g058380 CDC16 root nodule anatomy and morphology trait TO:0000898 25774204 IMP T Medtr8g058380 Increased nodules gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore germination gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased fungal spore production gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr8g058710 chitIII-3 25774204 IMP Medtr8g058710 Increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson -!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 aborted infection threads gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 arrested root nodule development gene taxon:3880 20150702 Ethan Johnson -!LIS Medtr8g106150 MtCre1 25774204 IMP Medtr8g106150 cytokinin response gene not induced by cytokinins gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g106150 MtCre1 cytokinin sensitivity TO:0000167 25774204 IMP T Medtr8g106150 root growth not inhibited by cytokinins gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g106150 MtCre1 root nodule number TO:0000900 25774204 IMP T Medtr8g106150 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson -LIS Medtr8g106150 MtCre1 root number TO:0000084 25774204 IMP T Medtr8g106150 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson +!DB DB_Object_ID DB_Object_Symbol Qualifier TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +LIS ABE72958.1 CPK3 root nodule number TO:0000900 PMID:25774204 IMP T ABE72958.1 Increased number of root nodules gene taxon:3880 20150706 Ethan Johnson +LIS ADC33495.1 VPY PMID:25774204 IMP ADC33495.1 Aborted mycorrhizae formation gene taxon:3880 20150706 Ethan Johnson +LIS ADC33495.1 VPY PMID:25774204 IMP ADC33495.1 Rhizobial Infection thread abnormal gene taxon:3880 20150706 Ethan Johnson +LIS ADC33495.1 VPY root nodule number TO:0000900 PMID:25774204 IMP T ADC33495.1 root nodulation decreased gene taxon:3880 20150706 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 Ovules exposed by unfused carpel edges gene taxon:3880 20150702 Ethan Johnson +!!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 abnomal ovules gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 either sepal-like or petal-like structures gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 fewer ovules gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 fused whorl of stamens and petals gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 seed pods absent gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 small carpel gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 small flowers gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 stigma sometimes absent gene taxon:3880 20150702 Ethan Johnson +!LIS AFI56799.1 NAM PMID:25774204 IMP AFI56799.1 style sometimes absent gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM carpel anatomy and morphology trait TO:0006012 PMID:25774204 IMP T AFI56799.1 abnormal carpel gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM cotyledon anatomy and morphology trait TO:0000749 PMID:25774204 IMP T AFI56799.1 fused cotyledons gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM embryo shape TO:0000193 PMID:25774204 IMP T AFI56799.1 cylindrical embryos gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM female sterility TO:0000358 PMID:25774204 IMP T AFI56799.1 sterile carpels gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM male sterility TO:0000437 PMID:25774204 IMP T AFI56799.1 sterile stamens gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM shoot apical meristem development TO:0006020 PMID:25774204 IMP T AFI56799.1 aborted shoot apical meristem gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM stamen anatomy and morphology trait TO:0000215 PMID:25774204 IMP T AFI56799.1 abnormal stamen gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM trichome anatomy and morphology trait TO:0000911 PMID:25774204 IMP T AFI56799.1 abnormal carpel trichomes gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T AFI56799.1 fused leaflets gene taxon:3880 20150702 Ethan Johnson +LIS AFI56799.1 NAM vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T AFI56799.1 malformed juvenile vascular leaves gene taxon:3880 20150702 Ethan Johnson +LIS CAD48198.1 ENOD40 tissue development trait TO:0006015 PMID:25774204 IMP T CAD48198.1 Abnormal tissue development gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Arbuscle formation decreased gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Arbuscle structure normal gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 Reduced root Jasmonic Acid levels gene taxon:3880 20150706 Ethan Johnson +!LIS CAI29046.1 MtAOC PMID:25774204 IMP CAI29046.1 mycorrhizae delayed colonization gene taxon:3880 20150706 Ethan Johnson +!LIS CAR57918.1 MtCCD1 PMID:25774204 IMP CAR57918.1 Degenerate arbuscles gene taxon:3880 20150706 Ethan Johnson +LIS CAR57918.1 MtCCD1 carotene content TO:0000289 PMID:25774204 IMP T CAR57918.1 Apocarotenoid levels abnormal in roots gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr1g056530 HAP2.1 PMID:25774204 IMP Medtr1g056530 nonfunctional root nodules gene taxon:3880 20150706 Ethan Johnson +LIS Medtr1g056530 HAP2.1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr1g056530 small root nodules gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 aborted infection threads gene taxon:3880 20150702 Ethan Johnson! +!LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr1g090320 LIN PMID:25774204 IMP Medtr1g090320 nodule development arrested gene taxon:3880 20150702 Ethan Johnson +LIS Medtr1g101600 CBF4 root length TO:0000227 PMID:25774204 IMP T Medtr1g101600 Higher Primary root length gene taxon:3880 20150706 Ethan Johnson +LIS Medtr1g101600 CBF4 salt tolerance TO:0006001 PMID:25774204 IMP T Medtr1g101600 Salt-stress tolerance increased gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr2g005870 DMI1 PMID:25774204 IMP Medtr2g005870 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +LIS Medtr2g005870 DMI1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr2g005870 root nodules absent gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr2g035020 GT3 (UGT73F3) PMID:25774204 IMP Medtr2g035020 Increased isoflavones in roots gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr2g035020 GT3 (UGT73F3) PMID:25774204 IMP Medtr2g035020 Reduced saponins in roots gene taxon:3880 20150706 Ethan Johnson +LIS Medtr2g035020 GT3 (UGT73F3) germination rate TO:0000430 PMID:25774204 IMP T Medtr2g035020 Seed germination delayed gene taxon:3880 20150706 Ethan Johnson +LIS Medtr2g035020 GT3 (UGT73F3) plant structure growth and development trait TO:0000928 PMID:25774204 IMP T Medtr2g035020 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson +LIS Medtr2g035020 GT3 (UGT73F3) root branching TO:0000257 PMID:25774204 IMP T Medtr2g035020 Roots less branched gene taxon:3880 20150706 Ethan Johnson +LIS Medtr2g035020 GT3 (UGT73F3) root length TO:0000227 PMID:25774204 IMP T Medtr2g035020 Roots short gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr3g021350 cyp716A12 PMID:25774204 IMP Medtr3g021350 Impaired hemolytic saponin synthesis gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g021350 cyp716A12 plant structure growth and development trait TO:0000928 PMID:25774204 IMP T Medtr3g021350 Plant growth stunted gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g098560 SGL1 flower anatomy and morphology trait TO:0000499 PMID:25774204 IMP T Medtr3g098560 fused flowers gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g098560 SGL1 leaf shape TO:0000492 PMID:25774204 IMP T Medtr3g098560 simple, unifoliate (not compound) leaves gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g098560 SGL1 petiole length TO:0000766 PMID:25774204 IMP T Medtr3g098560 Short petiole gene taxon:3880 20150706 Ethan Johnson! +!LIS Medtr3g099620 bHLH1 PMID:25774204 IMP Medtr3g099620 Nodulation delayed gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g099620 bHLH1 plant organ growth and development trait TO:0000927 PMID:25774204 IMP T Medtr3g099620 reduced growth of aboveground plant organs gene taxon:3880 20150706 Ethan Johnson +LIS Medtr3g099620 bHLH1 vascular bundle development trait TO:0020109 PMID:25774204 IMP T Medtr3g099620 Assymetrical development of nodule vascular bundles gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 Decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106420 FLOT2 PMID:25774204 IMP Medtr3g106420 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106420 FLOT2 lateral root length TO:0001012 PMID:25774204 IMP T Medtr3g106420 Long primary lateral roots gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106420 FLOT2 root nodule number PMID:25774204 IMP Medtr3g106420 More no-nodule plants gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106420 FLOT2 root nodule number TO:0000900 PMID:25774204 IMP T Medtr3g106420 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106420 FLOT2 seminal root length TO:0000586 PMID:25774204 IMP T Medtr3g106420 Decreased primary root length gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 A decrease in plants that form pink nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr3g106430 FLOT4 PMID:25774204 IMP Medtr3g106430 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106430 FLOT4 root nodule number TO:0000900 PMID:25774204 IMP T Medtr3g106430 Fewer nodules per plant gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106430 FLOT4 root number TO:0000084 PMID:25774204 IMP T Medtr3g106430 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106480 FLOT3 root length TO:0000227 PMID:25774204 IMP T Medtr3g106480 Decreased root length gene taxon:3880 20150702 Ethan Johnson +LIS Medtr3g106480 FLOT3 root weight TO:0000279 PMID:25774204 IMP T Medtr3g106480 Reduced root weight gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 Wild type nodulation response to ethylene gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 nodulation occurs in abnormal places on root gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g070970 SUNN PMID:25774204 IMP Medtr4g070970 nodulation under high nitrogen gene taxon:3880 20150702 Ethan Johnson +LIS Medtr4g070970 SUNN root length TO:0000227 PMID:25774204 IMP T Medtr4g070970 short roots gene taxon:3880 20150702 Ethan Johnson +LIS Medtr4g070970 SUNN root nodule number TO:0000900 PMID:25774204 IMP T Medtr4g070970 increased number of root nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 decreased rhizobial infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr4g084140 MtNAP1 PMID:25774204 IMP Medtr4g084140 reduced acetylene reduction gene taxon:3880 20150702 Ethan Johnson +LIS Medtr4g084140 MtNAP1 enzyme activity trait TO:0000599 PMID:25774204 IMP T Medtr4g084140 low nitrogenase activity in nodules gene taxon:3880 20150702 Ethan Johnson +LIS Medtr4g084140 MtNAP1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr4g084140 root nodules undeveloped and small gene taxon:3880 20150702 Ethan Johnson +LIS Medtr4g084140 MtNAP1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr4g084140 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g011250 ANS PMID:25774204 IMP Medtr5g011250 Reduced seed Oligomeric proanthocyanidin levels gene taxon:3880 20150706 Ethan Johnson +LIS Medtr5g011250 ANS anthocyanin content TO:0000071 PMID:25774204 IMP T Medtr5g011250 Reduced leaf Anthocyanin levels gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g014400 PALM1 PMID:25774204 IMP Medtr5g014400 Distal lateral leaflets develop similarly to terminal leaflets gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g014400 PALM1 PMID:25774204 IMP Medtr5g014400 Rachis length decreased gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Medtr5g014400 Forms dissected leaves gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g014400 PALM1 leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Medtr5g014400 Palmate-like pentafoliate leaves gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g014400 PALM1 petiole length TO:0000766 PMID:25774204 IMP T Medtr5g014400 Petiole length increased gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g019040 NFP PMID:25774204 IMP Medtr5g019040 Infection thread aborted gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g019040 NFP PMID:25774204 IMP Medtr5g019040 root nodules absent gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g022030 CDPK1 PMID:25774204 IMP Medtr5g022030 mycorrhizal symbioses decreased gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g022030 CDPK1 root cortical cell length TO:0020108 PMID:25774204 IMP T Medtr5g022030 reduced root cell length gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g022030 CDPK1 root hair length TO:0002665 PMID:25774204 IMP T Medtr5g022030 reduced root hair length gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g022030 CDPK1 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr5g022030 root nodulation decreased gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g026850 CYCLOPS PMID:25774204 IMP Medtr5g026850 inhibited mycorrhizal infection gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g026850 CYCLOPS PMID:25774204 IMP Medtr5g026850 inhibited rhizobial infection gene taxon:3880 20150706 Ethan Johnson +LIS Medtr5g026850 CYCLOPS root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr5g026850 arrested nodule development gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr5g030920 nork PMID:25774204 IMP Medtr5g030920 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g030920 nork root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of Nod factor gene taxon:3880 20150701 Ethan Johnson +LIS Medtr5g030920 nork root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g030920 Root nodules absent in presence of the rhizobial Sinorhizobium meliloti gene taxon:3880 20150701 Ethan Johnson +!LIS Medtr5g086120 LYK4 PMID:25774204 IMP Medtr5g086120 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g086120 LYK4 root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g086120 root nodules absent gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr5g086130 LYK3 PMID:25774204 IMP Medtr5g086130 Infection thread aborted gene taxon:3880 20150702 Ethan Johnson +LIS Medtr5g086130 LYK3 root nodule number TO:0000900 PMID:25774204 IMP T Medtr5g086130 root nodules absent gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr6g071190 FCL1 PMID:25774204 IMP Medtr6g071190 Leaf rachis malformed gene taxon:3880 20150702 Ethan Johnson +LIS Medtr6g071190 FCL1 petiole length TO:0000766 PMID:25774204 IMP T Medtr6g071190 Short petiole gene taxon:3880 20150702 Ethan Johnson +LIS Medtr6g071190 FCL1 vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T Medtr6g071190 Fused leaflets gene taxon:3880 20150702 Ethan Johnson +LIS Medtr7g084970 FTa1 flowering time trait TO:0002616 PMID:25774204 IMP T Medtr7g084970 Delayed flowering gene taxon:3880 20150702 Ethan Johnson +LIS Medtr7g085040 FTc flower development trait TO:0000622 PMID:25774204 IMP T Medtr7g085040 Flower development normal under long days gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g085810 ERN PMID:25774204 IMP Medtr7g085810 Rhizobial colonization blocked gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g085810 ERN PMID:25774204 IMP Medtr7g085810 Signal transduction for nodulation blocked gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 Reduced autocatylic ethylene production gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 Reduced inhibition of root growth in response to application of exogenous cytokinin benzyl adenine gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 increased pathogenic fungal damage gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 increased persistant rhizobia infection gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr7g101410 Skl1 PMID:25774204 IMP Medtr7g101410 radial swelling of primary infection zone gene taxon:3880 20150702 Ethan Johnson +LIS Medtr7g101410 Skl1 gravity response trait TO:0002693 PMID:25774204 IMP T Medtr7g101410 No loss of geotropism gene taxon:3880 20150706 Ethan Johnson +LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of hypocotyl growth gene taxon:3880 20150706 Ethan Johnson +LIS Medtr7g101410 Skl1 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Medtr7g101410 reduced apical hook angle gene taxon:3880 20150706 Ethan Johnson +LIS Medtr7g101410 Skl1 root development trait TO:0000656 PMID:25774204 IMP T Medtr7g101410 lack of inhibition of root growth gene taxon:3880 20150706 Ethan Johnson +LIS Medtr7g101410 Skl1 root hair length TO:0002665 PMID:25774204 IMP T Medtr7g101410 reduced ectopic root hairs gene taxon:3880 20150706 Ethan Johnson +LIS Medtr7g101410 Skl1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr7g101410 Absence of nodules gene taxon:3880 20150702 Ethan Johnson +LIS Medtr7g101410 Skl1 seedling cotyledon size TO:0000752 PMID:25774204 IMP T Medtr7g101410 large cotyledons gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g020200 ELF4 PMID:25774204 IMP Medtr8g020200 Circadian rhythm abnormal gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g043970 DMI3 PMID:25774204 IMP Medtr8g043970 mycorrhizal symbioses absent gene taxon:3880 20150702 Ethan Johnson +LIS Medtr8g043970 DMI3 root nodule number TO:0000900 PMID:25774204 IMP T Medtr8g043970 root nodule absent gene taxon:3880 20150702 Ethan Johnson +LIS Medtr8g058380 CDC16 auxin sensitivity TO:0000163 PMID:25774204 IMP T Medtr8g058380 Reduced auxin sensitivity by roots gene taxon:3880 20150706 Ethan Johnson +LIS Medtr8g058380 CDC16 root nodule anatomy and morphology trait TO:0000898 PMID:25774204 IMP T Medtr8g058380 Increased nodules gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased fungal spore germination gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased fungal spore production gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g058710 chitIII-3 PMID:25774204 IMP Medtr8g058710 Increased mycorrhizal infections gene taxon:3880 20150706 Ethan Johnson +!LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 aborted infection threads gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 arrested root nodule development gene taxon:3880 20150702 Ethan Johnson +!LIS Medtr8g106150 MtCre1 PMID:25774204 IMP Medtr8g106150 cytokinin response gene not induced by cytokinins gene taxon:3880 20150702 Ethan Johnson +LIS Medtr8g106150 MtCre1 cytokinin sensitivity TO:0000167 PMID:25774204 IMP T Medtr8g106150 root growth not inhibited by cytokinins gene taxon:3880 20150702 Ethan Johnson +LIS Medtr8g106150 MtCre1 root nodule number TO:0000900 PMID:25774204 IMP T Medtr8g106150 Fewer root nodules gene taxon:3880 20150702 Ethan Johnson +LIS Medtr8g106150 MtCre1 root number TO:0000084 PMID:25774204 IMP T Medtr8g106150 Increased secondary roots gene taxon:3880 20150702 Ethan Johnson diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc index 1e9d828..75a6cd2 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_S.lycopersicum.assoc @@ -1,202 +1,202 @@ -!DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -SGN_gene 197 b beta-carotene content TO:0002695 IMP T Solyc06g074240 high fruit beta-carotene gene taxon:4081 20150710 Ethan Johnson -SGN_gene 197 b lycopene content TO:0002699 IMP T Solyc06g074240 low fruit lycopene gene taxon:4081 20150713 Ethan Johnson -SGN_gene 197 b lycopene content TO:0002699 IMP T Solyc06g074240 high fruit lycopene gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 197 b IMP Solyc06g074240 tawny-orange corolla gene taxon:4081 20150713 Ethan Johnson -SGN_gene 187 bsr4 bacterial disease resistance TO:0000315 IMP T Solyc05g007850 resistance to bacterial spot gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 187 bsr4 IMP Solyc05g007850 HR response against Xanthomonas campestris pv. vesicatoria gene taxon:4081 20150713 Ethan Johnson -SGN_gene 799 det1 fruit color TO:0002617 IMP T Solyc01g056340 mature green fruits are dark green (enhanced pigment) gene taxon:4081 20150713 Ethan Johnson -SGN_gene 799 det1 fruit color TO:0002617 IMP T Solyc01g056340 immature green fruits are dark green gene taxon:4081 20150713 Ethan Johnson -SGN_gene 799 det1 pigment content TO:0000494 IMP T Solyc01g056340 mature red fruits have enhanced pigment gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 5560 gamybl1 IMP Solyc01g009070 no seed germination gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5560 gamybl1 gibberellic acid content TO:0002675 IMP T Solyc01g009070 gibberellin deficiency gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 961 man4 IMP Solyc01g008710 Inactive mannosidase in the fruit gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 292 y IMP Solyc01g079620 Decreased naringenin chalcone gene taxon:4081 20150713 Ethan Johnson -SGN_gene 292 y epicarp color TO:0002620 IMP T Solyc01g079620 Colorless fruit epidermis gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 8308 CD2 IMP Solyc01g091630 Decreased cutin gene taxon:4081 20150713 Ethan Johnson -SGN_gene 253 chln leaf vein color TO:0000719 IMP T Solyc01g100490 yellow leaf veins gene taxon:4081 20150713 Ethan Johnson -SGN_gene 253 chln plant height TO:0000207 IMP T Solyc01g100490 small plant size gene taxon:4081 20150713 Ethan Johnson -SGN_gene 253 chln leaf chlorosis TO:0006060 IMP T Solyc01g100490 chlorotic upper leaves gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 662 Gr IMP Solyc01g104340 green fruit flesh gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr lycopene content TO:0002699 IMP T Solyc01g104340 decreased fruit lycopene gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr ethylene sensitivity TO:0000173 IMP T Solyc01g104340 reduced ethylene sensitivity in fruits gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr leaf senescence TO:0000249 IMP T Solyc01g104340 delayed petal senescence gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 662 Gr IMP Solyc01g104340 Delayed floral abscission gene taxon:4081 20150713 Ethan Johnson -SGN_gene 662 Gr fruit growth and development trait TO:0000929 IMP T Solyc01g104340 fruit softening inhibited gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 chlorophyll content TO:0000495 IMP T Solyc02g021650 chlorophyll increased gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 carotenoid content TO:0000496 IMP T Solyc02g021650 carotenoids increased gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 1515 ddb1 IMP Solyc02g021650 ascorbic acid increased gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 1515 ddb1 IMP Solyc02g021650 increased plastid number gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 plastid development trait TO:0002714 IMP T Solyc02g021650 increased plastid size gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 leaf color TO:0000326 IMP T Solyc02g021650 dark green leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1515 ddb1 fruit color TO:0002617 IMP T Solyc02g021650 deep red fruits gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 301 s IMP Solyc02g077390 compound inflorescence gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 leaf midvein anatomy and morphology trait TO:0000822 IMP T Solyc02g081120 midvein foreshortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 leaf vein size TO:0000821 IMP T Solyc02g081120 lateral vein foreshortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 petiole size TO:0000768 IMP T Solyc02g081120 petiole foreshortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 vascular leaf anatomy and morphology trait TO:0000419 IMP T Solyc02g081120 crumpled leaf gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 5483 LeT6 IMP Solyc02g081120 Leaves 3-4 pinnately compound with clavate segments gene taxon:4081 20150713 Ethan Johnson -SGN_gene 5483 LeT6 internode length TO:0000145 IMP T Solyc02g081120 Shortened internodes gene taxon:4081 20150713 Ethan Johnson -SGN_gene 128 an flower shape TO:0000859 IMP T Solyc02g081670 flowers greatly changed gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 128 an IMP Solyc02g081670 compound inflorescence gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1094 o fruit shape TO:0002628 IMP T Solyc02g085500 ovate fruit gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1094 o fruit shape TO:0002628 IMP T Solyc02g085500 pear shaped fruit gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 8213 CER6 IMP Solyc02g085870 Increased water loss gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 428 d IMP Solyc02g089160 All parts foreshortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 428 d leaf color TO:0000326 IMP T Solyc02g089160 leaves dark gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 428 d IMP Solyc02g089160 leaves rugose gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 428 d IMP Solyc02g089160 All parts extremely foreshortened gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 428 d IMP Solyc02g089160 All parts shortened gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 yellow color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 yellow fruit flesh gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1599 psy1 flower color TO:0000537 IMP T Solyc03g031860 lighter yellow flowers gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1599 psy1 fruit color TO:0002617 IMP T Solyc03g031860 reddish color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 4476 zep IMP Solyc02g090890 wilty gene taxon:4081 20150713 Ethan Johnson -SGN_gene 4476 zep abscisic acid content TO:0002667 IMP T Solyc02g090890 abscisic acid deficiency gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 199 CrtR-b2 IMP Solyc03g007960 buff color corolla gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1418 sucr sucrose content TO:0000328 IMP T Solyc03g083910 mature fruit accumulates sucrose gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 120 asc IMP Solyc03g114600 resistant to alternaria stem canker gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 532 fa IMP Solyc03g118160 giant gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 532 fa IMP Solyc03g118160 vegetative gene taxon:4081 20150713 Ethan Johnson -SGN_gene 532 fa inflorescence branching TO:0000050 IMP T Solyc03g118160 highly ramified inflorescence gene taxon:4081 20150713 Ethan Johnson -SGN_gene 532 fa sterility related trait TO:0000485 IMP T Solyc03g118160 completely sterile gene taxon:4081 20150713 Ethan Johnson -SGN_gene 431 div plant height TO:0000207 IMP T Solyc03g119060 small plant gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 431 div IMP Solyc03g119060 squarrose plant gene taxon:4081 20150713 Ethan Johnson -SGN_gene 431 div leaf color TO:0000326 IMP T Solyc03g119060 intercostally yellowish leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 431 div leaf color TO:0000326 IMP T Solyc03g119060 ventrally purple leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 996 SlMlo1 fungal disease resistance TO:0000439 IMP T Solyc04g049090 resistance to powdery mildew gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 plant height TO:0000207 IMP T Solyc04g051510 Dwarf gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 hypocotyl anatomy and morphology trait TO:0000757 IMP T Solyc04g051510 short and thick hypocotyls gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 fertility related trait TO:0000420 IMP T Solyc04g051510 reduced fertility. gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 cotyledon anatomy and morphology trait TO:0000749 IMP T Solyc04g051510 curled cotyledons gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 347 cu3 IMP Solyc04g051510 dense leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 leaf curling TO:0002681 IMP T Solyc04g051510 curly leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 347 cu3 plant height TO:0000207 IMP T Solyc04g051510 reduced height to 50% gene taxon:4081 20150713 Ethan Johnson -SGN_gene 8373 ORR fruit ripening trait TO:0002633 IMP T Solyc04g057980 orange ripening gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 463 e IMP Solyc04g076850 few fused leaf segments gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e leaf midvein anatomy and morphology trait TO:0000822 IMP T Solyc04g076850 distorted midvein gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 463 e IMP Solyc04g076850 entire or broad leaflets gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e sepal anatomy and morphology trait TO:0000864 IMP T Solyc04g076850 asymmetrical sepals gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e leaf anatomy and morphology trait TO:0000748 IMP T Solyc04g076850 simple leaves gene taxon:4081 20150713 Ethan Johnson -SGN_gene 463 e plant trait TO:0000387 IMP T Solyc04g076850 multifusion phenotype gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 4495 cwp1 IMP Solyc04g082520 dehydration of fruits gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 4495 cwp1 IMP Solyc04g082520 microfissuring of fruit cuticle gene taxon:4081 20150713 Ethan Johnson -SGN_gene 900 lyr leaf shape TO:0000492 IMP T Solyc05g009380 first leaves entire (simple) gene taxon:4081 20150713 Ethan Johnson -SGN_gene 900 lyr leaf shape TO:0000492 IMP T Solyc05g009380 other leaves fan shaped gene taxon:4081 20150713 Ethan Johnson -SGN_gene 900 lyr female sterility TO:0000358 IMP T Solyc05g009380 female sterile gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1296 mc sepal size TO:0002604 IMP T Solyc05g012020 Sepal large gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1296 mc sepal anatomy and morphology trait TO:0000864 IMP T Solyc05g012020 Leaf-like sepal gene taxon:4081 20150713 Ethan Johnson -!SGN_gene 1296 mc IMP Solyc05g012020 pedicel joint enlarged gene taxon:4081 20150713 Ethan Johnson -SGN_gene 1296 mc inflorescence anatomy and morphology trait TO:0000373 IMP T Solyc05g012020 inflorescence indeterminate gene taxon:4081 20150713 Ethan Johnson -SGN_gene 541 Fen bacterial disease resistance TO:0000315 IMP T Solyc05g013290 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1238 Pto bacterial disease resistance TO:0000315 IMP T Solyc05g013300 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1238 Pto insecticide sensitivity TO:0000182 IMP T Solyc05g013300 fenthion sensitivity gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1296 rin fruit color TO:0002617 IMP T Solyc05g056620 Fruits green at maturity gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1296 rin fruit color TO:0002617 IMP T Solyc05g056620 Fruits turning bright yellow, gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1296 rin fruit ripening trait TO:0002633 IMP T Solyc05g056620 retarded ripening gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 271 cf2 IMP solyc06g008300 Resistant to Cladosporium fulvum gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 1322 sp IMP Solyc06g074350 indeterminate growth habit gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 1322 sp IMP Solyc06g074350 determinate habit gene taxon:4081 20150714 Ethan Johnson -SGN_gene 43107 Cul1 self-incompatibility IMP Solyc06g084520 pollen rejection gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 43107 Cul1 IMP Solyc06g084520 compatibility on styles gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1068 not leaf color TO:0000326 IMP T Solyc07g056570 green-yellow leaves gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1068 not leaf anatomy and morphology trait TO:0000748 IMP T Solyc07g056570 delicate leaves gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1068 not leaf rolling TO:0000085 IMP T Solyc07g056570 wilts in hot weather gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1068 not leaf rolling TO:0000085 IMP T Solyc07g056570 wilts in dry weather gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 483 etr2 IMP Solyc07g056580 delayed abscission gene taxon:4081 20150714 Ethan Johnson -SGN_gene 483 etr2 internode length TO:0000145 IMP T Solyc07g056580 shorter internode length gene taxon:4081 20150714 Ethan Johnson -SGN_gene 780 ls basal axillary branch number TO:0020024 IMP T Solyc07g066250 Few or no axillary branches gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 780 ls IMP Solyc07g066250 corolla suppressed gene taxon:4081 20150714 Ethan Johnson -SGN_gene 780 ls male sterility TO:0000437 IMP T Solyc07g066250 partially male sterile gene taxon:4081 20150714 Ethan Johnson -SGN_gene 661 gf fruit color TO:0002617 IMP T Solyc08g080090 ripe fruit purplish-brown color. gene taxon:4081 20150714 Ethan Johnson -SGN_gene 762 lin5 sugar content TO:0000333 IMP T Solyc09g010080 high fruit sugar gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1164 phyA red light sensitivity TO:0000158 IMP T Solyc10g044670 far red light insensitive gene taxon:4081 20150714 Ethan Johnson -SGN_gene 111013 sun fruit length TO:0002626 IMP T Solyc10g079240 elongated fruit shape gene taxon:4081 20150714 Ethan Johnson -SGN_gene 246 crtiso fruit color TO:0002617 IMP T Solyc10g081650 fruit flesh orange gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 246 crtiso IMP Solyc10g081650 stamens orange gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 246 crtiso IMP Solyc10g081650 yellowish growing point gene taxon:4081 20150714 Ethan Johnson -SGN_gene 246 crtiso leaf color TO:0000326 IMP T Solyc10g081650 light green foliage gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 246 crtiso IMP Solyc10g081650 yellowing near growing point gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j plant height TO:0000207 IMP T Solyc11g010570 higher plant gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j internode length TO:0000145 IMP T Solyc11g010570 long internodes gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j fruit weight TO:0002746 IMP T Solyc11g010570 heavier fruits gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j seed number TO:0000445 IMP T Solyc11g010570 less seeds gene taxon:4081 20150714 Ethan Johnson -SGN_gene 755 j inflorescence branch anatomy and morphology trait TO:0000784 IMP T Solyc11g010570 Jointless pedicels gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 755 j IMP Solyc11g010570 proliferated inflorescence. Growth rate increased gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 4504 GAI IMP Solyc11g011260 suppressed axillary bud development gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1187 ptox chlorophyll content TO:0000495 IMP T Solyc11g011990 incomplete chlorophyll deficiency gene taxon:4081 20150714 Ethan Johnson -SGN_gene 717 i2 fungal disease resistance TO:0000439 IMP T Solyc11g071430 Resistance to Fusarium oxysporum gene taxon:4081 20150714 Ethan Johnson -SGN_gene 538 fas carpel anatomy and morphology trait TO:0006012 IMP T Solyc11g071810 unfused carpels gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 538 fas IMP Solyc11g071810 Fruits many-loculed gene taxon:4081 20150714 Ethan Johnson -SGN_gene 391 del fruit color TO:0002617 IMP T Solyc12g008980 reddish-orange mature fruit color gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 391 del IMP Solyc12g008980 lycopene inhibition gene taxon:4081 20150714 Ethan Johnson -SGN_gene 391 del carotene content TO:0000289 IMP T Solyc12g008980 increased delta-carotene gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1605 yg2 leaf chlorosis TO:0006060 IMP T Solyc12g009470 Foliage chlorotic yellow-green gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1605 yg2 hypocotyl anatomy and morphology trait TO:0000757 IMP T Solyc12g009470 long hypocotyls gene taxon:4081 20150714 Ethan Johnson -SGN_gene 1605 yg2 leaf color TO:0000326 IMP T Solyc12g009470 All foliar parts yellow gene taxon:4081 20150714 Ethan Johnson -!SGN_gene 482 etr1 IMP Solyc12g011330 Delayed abscission gene taxon:4081 20150715 Ethan Johnson -SGN_gene 482 etr1 internode length TO:0000145 IMP T Solyc12g011330 Shorter internode length gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 482 etr1 IMP Solyc12g011330 Reduced auxin movement gene taxon:4081 20150715 Ethan Johnson -SGN_gene 277 cf9 fungal disease resistance TO:0000439 IMP T AJ002236 Resistance to Cladosporium fulvum gene taxon:4081 20150715 Ethan Johnson -SGN_gene 687 hero nematode damage resistance TO:0000384 IMP T AJ457051 Resistance to potato cyst nematode gene taxon:4081 20150715 Ethan Johnson -SGN_gene 43154 HT-A self-incompatibility TO:0000310 IMP T AB066584 self-incompatibility gene taxon:4081 20150715 Ethan Johnson -SGN_gene 43154 HT-A gametophytic incompatibility TO:0000049 IMP T AB066582 gametophytic self-incompatibility. gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 881 lc IMP JF284938 Reduced locule number gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 881 lc IMP JF285116 High locule number gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1305 Mi1-2 nematode damage resistance TO:0000384 IMP T SGN-U564276 High-level root-knot nematode resistance gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1305 Mi1-2 aphid resistance TO:0006067 IMP T SGN-U564276 Resistance to potato aphids gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1305 Mi1-2 IMP SGN-U564276 Resistance to potato whitefly gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit plant height TO:0000207 IMP T HQ317907 Smaller plant gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit leaf height TO:0000541 IMP T HQ317907 very short leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit leaf curling TO:0002681 IMP T HQ317907 leaves down curled gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit leaf necrosis TO:0000652 IMP T HQ317907 becoming necrotic gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1345 sit abscisic acid content TO:0002667 IMP T HQ317908 Abscisic acid deficient gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1345 sit IMP HQ317908 wilty gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1462 tm2 IMP FJ817603 High-level tobacco mosaic virus resistance gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 111014 wo IMP Solyc02g080490 All parts densely pubescent gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 111014 wo IMP Solyc02g080490 wooly gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 212 bl IMP Solyc11g069030 Determinate habit gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 212 bl IMP Solyc11g069030 strongly uprolled pinnae gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl flower shape TO:0000859 IMP T Solyc11g069030 fasciated flowers gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl fruit shape TO:0002628 IMP T Solyc11g069030 fasciated fruits gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl stem anatomy and morphology trait TO:0000361 IMP T Solyc11g069030 Stem terminating in first inflorescence gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 212 bl IMP Solyc11g069030 midribs may develop adventitious shoots gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 212 bl IMP Solyc11g069030 Determinant growth gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 IMP T Solyc11g069030 leafy calyx gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 IMP T Solyc11g069030 enlarged calyx gene taxon:4081 20150715 Ethan Johnson -SGN_gene 212 bl inflorescence anatomy and morphology trait TO:0000373 IMP T Solyc11g069030 few flowered inflorescence gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1045 nr fruit ripening trait TO:0002633 IMP T Solyc09g075440 Fruits ripen slowly gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1045 nr fruit color TO:0002617 IMP T Solyc09g075440 Fruits dirty orange color gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1046 Nr2 fruit color TO:0002617 IMP T Solyc09g075440 Fruit flesh turns slowly to yellowish green gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1046 Nr2 fruit firmness TO:0002634 IMP T Solyc09g075440 fruit flesh firm gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc leaf color TO:0000326 IMP T Solyc07g066480 yellowish leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc leaf rolling TO:0000085 IMP T Solyc07g066480 overwilting leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc leaf height TO:0000541 IMP T Solyc07g066480 short leaves gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 555 flc IMP Solyc07g066480 nearly unbranched plant and later spreading gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 555 flc IMP Solyc07g066480 erect plant gene taxon:4081 20150715 Ethan Johnson -SGN_gene 555 flc plant height TO:0000207 IMP T Solyc07g066480 small plant gene taxon:4081 20150715 Ethan Johnson -SGN_gene 539 fer leaf chlorosis TO:0006060 IMP T Solyc06g051550 Severe chlorosis beginning in first true leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 539 fer mineral and ion transport trait TO:0020096 IMP T Solyc06g051550 faulty iron transport in xylem gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 IMP T Solyc07g062680 simple leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 IMP T Solyc07g062680 entire leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la leaf size TO:0002637 IMP T Solyc07g062680 small leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la leaf length TO:0000135 IMP T Solyc07g062680 elongated leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la stem width TO:0001035 IMP T Solyc07g062680 slender stems gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la inflorescence branching TO:0000050 IMP T Solyc07g062680 excessively branched gene taxon:4081 20150715 Ethan Johnson -SGN_gene 776 la fruit size TO:0002625 IMP T Solyc07g062680 small fruits gene taxon:4081 20150715 Ethan Johnson -SGN_gene 8229 GOB leaf anatomy and morphology trait TO:0000748 IMP T Solyc07g062840 simple leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 8229 GOB shoot apical meristem development TO:0006020 IMP T Solyc07g062840 shoot apical meristem terminates gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 gravity response trait TO:0002693 IMP T In seedlings, roots grow agravitropicaly for first 4-5 days after germination, then gradually re-orientation towards gravity. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 gravity response trait TO:0002693 IMP T APS1 Shoots show mild agravitropism throughout life of plant. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 fruit size TO:0002625 IMP T APS1 Fruit size slightly reduced. gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1465 APS1 IMP APS1 Root tips do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1465 APS1 IMP APS1 leaves do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1465 APS1 IMP APS1 fruit do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 1465 APS1 IMP APS1 stems do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 starch content TO:0000696 IMP T APS1 Starch levels in mature green fruit below detection limit of spectrophotometric assay. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 1465 APS1 sugar content TO:0000333 IMP T APS1 BRIX levels slightly lower than wild type. gene taxon:4081 20150715 Ethan Johnson -SGN_gene 20827 rdr6 leaf width TO:0000370 IMP T Solyc04g014870 slender leaves gene taxon:4081 20150715 Ethan Johnson -SGN_gene 20827 rdr6 plant height TO:0000207 IMP T Solyc04g014870 dwarfed plant gene taxon:4081 20150715 Ethan Johnson -SGN_gene 20827 rdr6 petal width TO:0002606 IMP T Solyc04g014870 slender petals gene taxon:4081 20150715 Ethan Johnson -SGN_gene 20827 rdr6 leaf shape TO:0000492 IMP T Solyc04g014870 shoestring leaves gene taxon:4081 20150715 Ethan Johnson -!SGN_gene 20827 rdr6 IMP Solyc04g014870 no leaf blade expansion gene taxon:4081 20150715 Ethan Johnson \ No newline at end of file +!DB DB_Object_ID DB_Object_Symbol Qualifier TOid PMID:25774204 Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by +SGN_gene 197 b beta-carotene content TO:0002695 PMID:25774204 IMP T Solyc06g074240 high fruit beta-carotene gene taxon:4081 20150710 Ethan Johnson +SGN_gene 197 b lycopene content TO:0002699 PMID:25774204 IMP T Solyc06g074240 low fruit lycopene gene taxon:4081 20150713 Ethan Johnson +SGN_gene 197 b lycopene content TO:0002699 PMID:25774204 IMP T Solyc06g074240 high fruit lycopene gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 197 b PMID:25774204 IMP Solyc06g074240 tawny-orange corolla gene taxon:4081 20150713 Ethan Johnson +SGN_gene 187 bsr4 bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g007850 resistance to bacterial spot gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 187 bsr4 PMID:25774204 IMP Solyc05g007850 HR response against Xanthomonas campestris pv. vesicatoria gene taxon:4081 20150713 Ethan Johnson +SGN_gene 799 det1 fruit color TO:0002617 PMID:25774204 IMP T Solyc01g056340 mature green fruits are dark green (enhanced pigment) gene taxon:4081 20150713 Ethan Johnson +SGN_gene 799 det1 fruit color TO:0002617 PMID:25774204 IMP T Solyc01g056340 immature green fruits are dark green gene taxon:4081 20150713 Ethan Johnson +SGN_gene 799 det1 pigment content TO:0000494 PMID:25774204 IMP T Solyc01g056340 mature red fruits have enhanced pigment gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 5560 gamybl1 PMID:25774204 IMP Solyc01g009070 no seed germination gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5560 gamybl1 gibberellic acid content TO:0002675 PMID:25774204 IMP T Solyc01g009070 gibberellin deficiency gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 961 man4 PMID:25774204 IMP Solyc01g008710 Inactive mannosidase in the fruit gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 292 y PMID:25774204 IMP Solyc01g079620 Decreased naringenin chalcone gene taxon:4081 20150713 Ethan Johnson +SGN_gene 292 y epicarp color TO:0002620 PMID:25774204 IMP T Solyc01g079620 Colorless fruit epidermis gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 8308 CD2 PMID:25774204 IMP Solyc01g091630 Decreased cutin gene taxon:4081 20150713 Ethan Johnson +SGN_gene 253 chln leaf vein color TO:0000719 PMID:25774204 IMP T Solyc01g100490 yellow leaf veins gene taxon:4081 20150713 Ethan Johnson +SGN_gene 253 chln plant height TO:0000207 PMID:25774204 IMP T Solyc01g100490 small plant size gene taxon:4081 20150713 Ethan Johnson +SGN_gene 253 chln leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc01g100490 chlorotic upper leaves gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 662 Gr PMID:25774204 IMP Solyc01g104340 green fruit flesh gene taxon:4081 20150713 Ethan Johnson +SGN_gene 662 Gr lycopene content TO:0002699 PMID:25774204 IMP T Solyc01g104340 decreased fruit lycopene gene taxon:4081 20150713 Ethan Johnson +SGN_gene 662 Gr ethylene sensitivity TO:0000173 PMID:25774204 IMP T Solyc01g104340 reduced ethylene sensitivity in fruits gene taxon:4081 20150713 Ethan Johnson +SGN_gene 662 Gr leaf senescence TO:0000249 PMID:25774204 IMP T Solyc01g104340 delayed petal senescence gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 662 Gr PMID:25774204 IMP Solyc01g104340 Delayed floral abscission gene taxon:4081 20150713 Ethan Johnson +SGN_gene 662 Gr fruit growth and development trait TO:0000929 PMID:25774204 IMP T Solyc01g104340 fruit softening inhibited gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1515 ddb1 chlorophyll content TO:0000495 PMID:25774204 IMP T Solyc02g021650 chlorophyll increased gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1515 ddb1 carotenoid content TO:0000496 PMID:25774204 IMP T Solyc02g021650 carotenoids increased gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1515 ddb1 PMID:25774204 IMP Solyc02g021650 ascorbic acid increased gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1515 ddb1 PMID:25774204 IMP Solyc02g021650 increased plastid number gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1515 ddb1 plastid development trait TO:0002714 PMID:25774204 IMP T Solyc02g021650 increased plastid size gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1515 ddb1 leaf color TO:0000326 PMID:25774204 IMP T Solyc02g021650 dark green leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1515 ddb1 fruit color TO:0002617 PMID:25774204 IMP T Solyc02g021650 deep red fruits gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 301 s PMID:25774204 IMP Solyc02g077390 compound inflorescence gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5483 LeT6 leaf midvein anatomy and morphology trait TO:0000822 PMID:25774204 IMP T Solyc02g081120 midvein foreshortened gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5483 LeT6 leaf vein size TO:0000821 PMID:25774204 IMP T Solyc02g081120 lateral vein foreshortened gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5483 LeT6 petiole size TO:0000768 PMID:25774204 IMP T Solyc02g081120 petiole foreshortened gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5483 LeT6 vascular leaf anatomy and morphology trait TO:0000419 PMID:25774204 IMP T Solyc02g081120 crumpled leaf gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 5483 LeT6 PMID:25774204 IMP Solyc02g081120 Leaves 3-4 pinnately compound with clavate segments gene taxon:4081 20150713 Ethan Johnson +SGN_gene 5483 LeT6 internode length TO:0000145 PMID:25774204 IMP T Solyc02g081120 Shortened internodes gene taxon:4081 20150713 Ethan Johnson +SGN_gene 128 an flower shape TO:0000859 PMID:25774204 IMP T Solyc02g081670 flowers greatly changed gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 128 an PMID:25774204 IMP Solyc02g081670 compound inflorescence gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1094 o fruit shape TO:0002628 PMID:25774204 IMP T Solyc02g085500 ovate fruit gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1094 o fruit shape TO:0002628 PMID:25774204 IMP T Solyc02g085500 pear shaped fruit gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 8213 CER6 PMID:25774204 IMP Solyc02g085870 Increased water loss gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts foreshortened gene taxon:4081 20150713 Ethan Johnson +SGN_gene 428 d leaf color TO:0000326 PMID:25774204 IMP T Solyc02g089160 leaves dark gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 leaves rugose gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts extremely foreshortened gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 428 d PMID:25774204 IMP Solyc02g089160 All parts shortened gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 yellow fruit flesh gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1599 psy1 flower color TO:0000537 PMID:25774204 IMP T Solyc03g031860 lighter yellow flowers gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1599 psy1 fruit color TO:0002617 PMID:25774204 IMP T Solyc03g031860 reddish color of ripe fruit flesh gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4476 zep PMID:25774204 IMP Solyc02g090890 wilty gene taxon:4081 20150713 Ethan Johnson +SGN_gene 4476 zep abscisic acid content TO:0002667 PMID:25774204 IMP T Solyc02g090890 abscisic acid deficiency gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 199 CrtR-b2 PMID:25774204 IMP Solyc03g007960 buff color corolla gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1418 sucr sucrose content TO:0000328 PMID:25774204 IMP T Solyc03g083910 mature fruit accumulates sucrose gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 120 asc PMID:25774204 IMP Solyc03g114600 resistant to alternaria stem canker gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 532 fa PMID:25774204 IMP Solyc03g118160 giant gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 532 fa PMID:25774204 IMP Solyc03g118160 vegetative gene taxon:4081 20150713 Ethan Johnson +SGN_gene 532 fa inflorescence branching TO:0000050 PMID:25774204 IMP T Solyc03g118160 highly ramified inflorescence gene taxon:4081 20150713 Ethan Johnson +SGN_gene 532 fa sterility related trait TO:0000485 PMID:25774204 IMP T Solyc03g118160 completely sterile gene taxon:4081 20150713 Ethan Johnson +SGN_gene 431 div plant height TO:0000207 PMID:25774204 IMP T Solyc03g119060 small plant gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 431 div PMID:25774204 IMP Solyc03g119060 squarrose plant gene taxon:4081 20150713 Ethan Johnson +SGN_gene 431 div leaf color TO:0000326 PMID:25774204 IMP T Solyc03g119060 intercostally yellowish leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 431 div leaf color TO:0000326 PMID:25774204 IMP T Solyc03g119060 ventrally purple leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 996 SlMlo1 fungal disease resistance TO:0000439 PMID:25774204 IMP T Solyc04g049090 resistance to powdery mildew gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 plant height TO:0000207 PMID:25774204 IMP T Solyc04g051510 Dwarf gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Solyc04g051510 short and thick hypocotyls gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 fertility related trait TO:0000420 PMID:25774204 IMP T Solyc04g051510 reduced fertility. gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 cotyledon anatomy and morphology trait TO:0000749 PMID:25774204 IMP T Solyc04g051510 curled cotyledons gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 347 cu3 PMID:25774204 IMP Solyc04g051510 dense leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 leaf curling TO:0002681 PMID:25774204 IMP T Solyc04g051510 curly leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 347 cu3 plant height TO:0000207 PMID:25774204 IMP T Solyc04g051510 reduced height to 50% gene taxon:4081 20150713 Ethan Johnson +SGN_gene 8373 ORR fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc04g057980 orange ripening gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 463 e PMID:25774204 IMP Solyc04g076850 few fused leaf segments gene taxon:4081 20150713 Ethan Johnson +SGN_gene 463 e leaf midvein anatomy and morphology trait TO:0000822 PMID:25774204 IMP T Solyc04g076850 distorted midvein gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 463 e PMID:25774204 IMP Solyc04g076850 entire or broad leaflets gene taxon:4081 20150713 Ethan Johnson +SGN_gene 463 e sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc04g076850 asymmetrical sepals gene taxon:4081 20150713 Ethan Johnson +SGN_gene 463 e leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc04g076850 simple leaves gene taxon:4081 20150713 Ethan Johnson +SGN_gene 463 e plant trait TO:0000387 PMID:25774204 IMP T Solyc04g076850 multifusion phenotype gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4495 cwp1 PMID:25774204 IMP Solyc04g082520 dehydration of fruits gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 4495 cwp1 PMID:25774204 IMP Solyc04g082520 microfissuring of fruit cuticle gene taxon:4081 20150713 Ethan Johnson +SGN_gene 900 lyr leaf shape TO:0000492 PMID:25774204 IMP T Solyc05g009380 first leaves entire (simple) gene taxon:4081 20150713 Ethan Johnson +SGN_gene 900 lyr leaf shape TO:0000492 PMID:25774204 IMP T Solyc05g009380 other leaves fan shaped gene taxon:4081 20150713 Ethan Johnson +SGN_gene 900 lyr female sterility TO:0000358 PMID:25774204 IMP T Solyc05g009380 female sterile gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1296 mc sepal size TO:0002604 PMID:25774204 IMP T Solyc05g012020 Sepal large gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1296 mc sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc05g012020 Leaf-like sepal gene taxon:4081 20150713 Ethan Johnson +!SGN_gene 1296 mc PMID:25774204 IMP Solyc05g012020 pedicel joint enlarged gene taxon:4081 20150713 Ethan Johnson +SGN_gene 1296 mc inflorescence anatomy and morphology trait TO:0000373 PMID:25774204 IMP T Solyc05g012020 inflorescence indeterminate gene taxon:4081 20150713 Ethan Johnson +SGN_gene 541 Fen bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g013290 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1238 Pto bacterial disease resistance TO:0000315 PMID:25774204 IMP T Solyc05g013300 resistance to Pseudomonas syringae gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1238 Pto insecticide sensitivity TO:0000182 PMID:25774204 IMP T Solyc05g013300 fenthion sensitivity gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1296 rin fruit color TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits green at maturity gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1296 rin fruit color TO:0002617 PMID:25774204 IMP T Solyc05g056620 Fruits turning bright yellow, gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1296 rin fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc05g056620 retarded ripening gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 271 cf2 PMID:25774204 IMP solyc06g008300 Resistant to Cladosporium fulvum gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 1322 sp PMID:25774204 IMP Solyc06g074350 indeterminate growth habit gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 1322 sp PMID:25774204 IMP Solyc06g074350 determinate habit gene taxon:4081 20150714 Ethan Johnson +SGN_gene 43107 Cul1 self-incompatibility PMID:25774204 IMP Solyc06g084520 pollen rejection gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 43107 Cul1 PMID:25774204 IMP Solyc06g084520 compatibility on styles gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1068 not leaf color TO:0000326 PMID:25774204 IMP T Solyc07g056570 green-yellow leaves gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1068 not leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g056570 delicate leaves gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1068 not leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in hot weather gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1068 not leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g056570 wilts in dry weather gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 483 etr2 PMID:25774204 IMP Solyc07g056580 delayed abscission gene taxon:4081 20150714 Ethan Johnson +SGN_gene 483 etr2 internode length TO:0000145 PMID:25774204 IMP T Solyc07g056580 shorter internode length gene taxon:4081 20150714 Ethan Johnson +SGN_gene 780 ls basal axillary branch number TO:0020024 PMID:25774204 IMP T Solyc07g066250 Few or no axillary branches gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 780 ls PMID:25774204 IMP Solyc07g066250 corolla suppressed gene taxon:4081 20150714 Ethan Johnson +SGN_gene 780 ls male sterility TO:0000437 PMID:25774204 IMP T Solyc07g066250 partially male sterile gene taxon:4081 20150714 Ethan Johnson +SGN_gene 661 gf fruit color TO:0002617 PMID:25774204 IMP T Solyc08g080090 ripe fruit purplish-brown color. gene taxon:4081 20150714 Ethan Johnson +SGN_gene 762 lin5 sugar content TO:0000333 PMID:25774204 IMP T Solyc09g010080 high fruit sugar gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1164 phyA red light sensitivity TO:0000158 PMID:25774204 IMP T Solyc10g044670 far red light insensitive gene taxon:4081 20150714 Ethan Johnson +SGN_gene 111013 sun fruit length TO:0002626 PMID:25774204 IMP T Solyc10g079240 elongated fruit shape gene taxon:4081 20150714 Ethan Johnson +SGN_gene 246 crtiso fruit color TO:0002617 PMID:25774204 IMP T Solyc10g081650 fruit flesh orange gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 stamens orange gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 yellowish growing point gene taxon:4081 20150714 Ethan Johnson +SGN_gene 246 crtiso leaf color TO:0000326 PMID:25774204 IMP T Solyc10g081650 light green foliage gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 246 crtiso PMID:25774204 IMP Solyc10g081650 yellowing near growing point gene taxon:4081 20150714 Ethan Johnson +SGN_gene 755 j plant height TO:0000207 PMID:25774204 IMP T Solyc11g010570 higher plant gene taxon:4081 20150714 Ethan Johnson +SGN_gene 755 j internode length TO:0000145 PMID:25774204 IMP T Solyc11g010570 long internodes gene taxon:4081 20150714 Ethan Johnson +SGN_gene 755 j fruit weight TO:0002746 PMID:25774204 IMP T Solyc11g010570 heavier fruits gene taxon:4081 20150714 Ethan Johnson +SGN_gene 755 j seed number TO:0000445 PMID:25774204 IMP T Solyc11g010570 less seeds gene taxon:4081 20150714 Ethan Johnson +SGN_gene 755 j inflorescence branch anatomy and morphology trait TO:0000784 PMID:25774204 IMP T Solyc11g010570 Jointless pedicels gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 755 j PMID:25774204 IMP Solyc11g010570 proliferated inflorescence. Growth rate increased gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 4504 GAI PMID:25774204 IMP Solyc11g011260 suppressed axillary bud development gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1187 ptox chlorophyll content TO:0000495 PMID:25774204 IMP T Solyc11g011990 incomplete chlorophyll deficiency gene taxon:4081 20150714 Ethan Johnson +SGN_gene 717 i2 fungal disease resistance TO:0000439 PMID:25774204 IMP T Solyc11g071430 Resistance to Fusarium oxysporum gene taxon:4081 20150714 Ethan Johnson +SGN_gene 538 fas carpel anatomy and morphology trait TO:0006012 PMID:25774204 IMP T Solyc11g071810 unfused carpels gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 538 fas PMID:25774204 IMP Solyc11g071810 Fruits many-loculed gene taxon:4081 20150714 Ethan Johnson +SGN_gene 391 del fruit color TO:0002617 PMID:25774204 IMP T Solyc12g008980 reddish-orange mature fruit color gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 391 del PMID:25774204 IMP Solyc12g008980 lycopene inhibition gene taxon:4081 20150714 Ethan Johnson +SGN_gene 391 del carotene content TO:0000289 PMID:25774204 IMP T Solyc12g008980 increased delta-carotene gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1605 yg2 leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc12g009470 Foliage chlorotic yellow-green gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1605 yg2 hypocotyl anatomy and morphology trait TO:0000757 PMID:25774204 IMP T Solyc12g009470 long hypocotyls gene taxon:4081 20150714 Ethan Johnson +SGN_gene 1605 yg2 leaf color TO:0000326 PMID:25774204 IMP T Solyc12g009470 All foliar parts yellow gene taxon:4081 20150714 Ethan Johnson +!SGN_gene 482 etr1 PMID:25774204 IMP Solyc12g011330 Delayed abscission gene taxon:4081 20150715 Ethan Johnson +SGN_gene 482 etr1 internode length TO:0000145 PMID:25774204 IMP T Solyc12g011330 Shorter internode length gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 482 etr1 PMID:25774204 IMP Solyc12g011330 Reduced auxin movement gene taxon:4081 20150715 Ethan Johnson +SGN_gene 277 cf9 fungal disease resistance TO:0000439 PMID:25774204 IMP T AJ002236 Resistance to Cladosporium fulvum gene taxon:4081 20150715 Ethan Johnson +SGN_gene 687 hero nematode damage resistance TO:0000384 PMID:25774204 IMP T AJ457051 Resistance to potato cyst nematode gene taxon:4081 20150715 Ethan Johnson +SGN_gene 43154 HT-A self-incompatibility TO:0000310 PMID:25774204 IMP T AB066584 self-incompatibility gene taxon:4081 20150715 Ethan Johnson +SGN_gene 43154 HT-A gametophytic incompatibility TO:0000049 PMID:25774204 IMP T AB066582 gametophytic self-incompatibility. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 881 lc PMID:25774204 IMP JF284938 Reduced locule number gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 881 lc PMID:25774204 IMP JF285116 High locule number gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1305 Mi1-2 nematode damage resistance TO:0000384 PMID:25774204 IMP T SGN-U564276 High-level root-knot nematode resistance gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1305 Mi1-2 aphid resistance TO:0006067 PMID:25774204 IMP T SGN-U564276 Resistance to potato aphids gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1305 Mi1-2 PMID:25774204 IMP SGN-U564276 Resistance to potato whitefly gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1345 sit plant height TO:0000207 PMID:25774204 IMP T HQ317907 Smaller plant gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1345 sit leaf height TO:0000541 PMID:25774204 IMP T HQ317907 very short leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1345 sit leaf curling TO:0002681 PMID:25774204 IMP T HQ317907 leaves down curled gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1345 sit leaf necrosis TO:0000652 PMID:25774204 IMP T HQ317907 becoming necrotic gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1345 sit abscisic acid content TO:0002667 PMID:25774204 IMP T HQ317908 Abscisic acid deficient gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1345 sit PMID:25774204 IMP HQ317908 wilty gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1462 tm2 PMID:25774204 IMP FJ817603 High-level tobacco mosaic virus resistance gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 111014 wo PMID:25774204 IMP Solyc02g080490 All parts densely pubescent gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 111014 wo PMID:25774204 IMP Solyc02g080490 wooly gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 Determinate habit gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 strongly uprolled pinnae gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl flower shape TO:0000859 PMID:25774204 IMP T Solyc11g069030 fasciated flowers gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl fruit shape TO:0002628 PMID:25774204 IMP T Solyc11g069030 fasciated fruits gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl stem anatomy and morphology trait TO:0000361 PMID:25774204 IMP T Solyc11g069030 Stem terminating in first inflorescence gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 midribs may develop adventitious shoots gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 212 bl PMID:25774204 IMP Solyc11g069030 Determinant growth gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc11g069030 leafy calyx gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl sepal anatomy and morphology trait TO:0000864 PMID:25774204 IMP T Solyc11g069030 enlarged calyx gene taxon:4081 20150715 Ethan Johnson +SGN_gene 212 bl inflorescence anatomy and morphology trait TO:0000373 PMID:25774204 IMP T Solyc11g069030 few flowered inflorescence gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1045 nr fruit ripening trait TO:0002633 PMID:25774204 IMP T Solyc09g075440 Fruits ripen slowly gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1045 nr fruit color TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruits dirty orange color gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1046 Nr2 fruit color TO:0002617 PMID:25774204 IMP T Solyc09g075440 Fruit flesh turns slowly to yellowish green gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1046 Nr2 fruit firmness TO:0002634 PMID:25774204 IMP T Solyc09g075440 fruit flesh firm gene taxon:4081 20150715 Ethan Johnson +SGN_gene 555 flc leaf color TO:0000326 PMID:25774204 IMP T Solyc07g066480 yellowish leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 555 flc leaf rolling TO:0000085 PMID:25774204 IMP T Solyc07g066480 overwilting leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 555 flc leaf height TO:0000541 PMID:25774204 IMP T Solyc07g066480 short leaves gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 555 flc PMID:25774204 IMP Solyc07g066480 nearly unbranched plant and later spreading gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 555 flc PMID:25774204 IMP Solyc07g066480 erect plant gene taxon:4081 20150715 Ethan Johnson +SGN_gene 555 flc plant height TO:0000207 PMID:25774204 IMP T Solyc07g066480 small plant gene taxon:4081 20150715 Ethan Johnson +SGN_gene 539 fer leaf chlorosis TO:0006060 PMID:25774204 IMP T Solyc06g051550 Severe chlorosis beginning in first true leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 539 fer mineral and ion transport trait TO:0020096 PMID:25774204 IMP T Solyc06g051550 faulty iron transport in xylem gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062680 simple leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062680 entire leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la leaf size TO:0002637 PMID:25774204 IMP T Solyc07g062680 small leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la leaf length TO:0000135 PMID:25774204 IMP T Solyc07g062680 elongated leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la stem width TO:0001035 PMID:25774204 IMP T Solyc07g062680 slender stems gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la inflorescence branching TO:0000050 PMID:25774204 IMP T Solyc07g062680 excessively branched gene taxon:4081 20150715 Ethan Johnson +SGN_gene 776 la fruit size TO:0002625 PMID:25774204 IMP T Solyc07g062680 small fruits gene taxon:4081 20150715 Ethan Johnson +SGN_gene 8229 GOB leaf anatomy and morphology trait TO:0000748 PMID:25774204 IMP T Solyc07g062840 simple leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 8229 GOB shoot apical meristem development TO:0006020 PMID:25774204 IMP T Solyc07g062840 shoot apical meristem terminates gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1465 APS1 gravity response trait TO:0002693 PMID:25774204 IMP T In seedlings, roots grow agravitropicaly for first 4-5 days after germination, then gradually re-orientation towards gravity. gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1465 APS1 gravity response trait TO:0002693 PMID:25774204 IMP T APS1 Shoots show mild agravitropism throughout life of plant. gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1465 APS1 fruit size TO:0002625 PMID:25774204 IMP T APS1 Fruit size slightly reduced. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 PMID:25774204 IMP APS1 Root tips do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 PMID:25774204 IMP APS1 leaves do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 PMID:25774204 IMP APS1 fruit do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 1465 APS1 PMID:25774204 IMP APS1 stems do not stain for starch using Lugol's iodine solution. gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1465 APS1 starch content TO:0000696 PMID:25774204 IMP T APS1 Starch levels in mature green fruit below detection limit of spectrophotometric assay. gene taxon:4081 20150715 Ethan Johnson +SGN_gene 1465 APS1 sugar content TO:0000333 PMID:25774204 IMP T APS1 BRIX levels slightly lower than wild type. gene taxon:4081 20150715 Ethan Johnson +SGN_gene 20827 rdr6 leaf width TO:0000370 PMID:25774204 IMP T Solyc04g014870 slender leaves gene taxon:4081 20150715 Ethan Johnson +SGN_gene 20827 rdr6 plant height TO:0000207 PMID:25774204 IMP T Solyc04g014870 dwarfed plant gene taxon:4081 20150715 Ethan Johnson +SGN_gene 20827 rdr6 petal width TO:0002606 PMID:25774204 IMP T Solyc04g014870 slender petals gene taxon:4081 20150715 Ethan Johnson +SGN_gene 20827 rdr6 leaf shape TO:0000492 PMID:25774204 IMP T Solyc04g014870 shoestring leaves gene taxon:4081 20150715 Ethan Johnson +!SGN_gene 20827 rdr6 PMID:25774204 IMP Solyc04g014870 no leaf blade expansion gene taxon:4081 20150715 Ethan Johnson diff --git a/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc b/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc index 826f755..c652669 100644 --- a/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc +++ b/to-associations/Test_PPPP_TO/TO_IMP_gene_Z.mays.assoc @@ -1,117 +1,117 @@ !DB DB_Object_ID DB_Object_Symbol Qualifier TOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -MaizeGDB 104331 ns2 internode length TO:0000145 PMID: 17571927 IMP T NM_001111772.1 extremely shortened internodes Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 104331 ns2 plant height TO:0000207 PMID: 17571927 IMP T NM_001111772.1 Plants are reduced in height Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 104331 ns2 stem elongation TO:0006036 PMID: 17571927 IMP T NM_001111772.1 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 106358 crs2 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G132021 Seedling leaves are white. Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 111820 abph1 leaf anatomy and morphology trait TO:0000748 PMID: 21423772 IMP T GRMZM2G035688 Two leaves at each node, in decussate phyllotaxy. Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 112957 bsd2 chloroplast development trait TO:0002715 PMID: 25725436 IMP T GRMZM2G062788 chloroplasts contain rudimentary lamellae Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 112957 bsd2 seedling cotyledon color TO:0000750 PMID: 25725436 IMP T GRMZM2G062788 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 112957 bsd2 seedling growth and development trait TO:0000949 PMID: 25725436 IMP GRMZM2G062788 seedling dies after endosperm is used up Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 113518 ms26 anther shape TO:0000214 PMID: 24112765 IMP T GRMZM2G091822 Anthers shriveled Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 113518 ms26 male sterility TO:0000437 PMID: 24112765 IMP T GRMZM2G091822 Male sterile Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 113518 ms26 pollen free TO:0000245 PMID: 24112765 IMP T GRMZM2G091822 Pollen absent or aborted. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 114025 rtcs1 lateral root number TO:0001013 PMID: 23843603 IMP T GRMZM2G092542 few or no secondary roots Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G026930 Aleurone layer is colored Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G026930 no color in aleurone Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 anther color TO:0000187 PMID: 21423772 IMP T GRMZM2G026930 anthers are green Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G026930 lack of anthocyanins in aleurone Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 pericarp color TO:0000707 PMID: 21423772 IMP T GRMZM2G026930 The pericarp is brown Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 seedling vigor TO:0000280 PMID: 21423772 IMP T GRMZM2G026930 seedling dies Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12000 a1 style color TO:0000676 PMID: 21423772 IMP T GRMZM2G026930 silks are green Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12006 a2 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G345717 Aleurone layer is colored Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12006 a2 anther color TO:0000187 PMID: 21423772 IMP T GRMZM2G345717 anthers are green Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 104331 ns2 internode length TO:0000145 PMID:17571927 IMP T NM_001111772.1 extremely shortened internodes Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 104331 ns2 plant height TO:0000207 PMID:17571927 IMP T NM_001111772.1 Plants are reduced in height Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 104331 ns2 stem elongation TO:0006036 PMID:17571927 IMP T NM_001111772.1 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 106358 crs2 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G132021 Seedling leaves are white. Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 111820 abph1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G035688 Two leaves at each node, in decussate phyllotaxy. Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 112957 bsd2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G062788 chloroplasts contain rudimentary lamellae Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 112957 bsd2 seedling cotyledon color TO:0000750 PMID:25725436 IMP T GRMZM2G062788 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 112957 bsd2 seedling growth and development trait TO:0000949 PMID:25725436 IMP GRMZM2G062788 seedling dies after endosperm is used up Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 113518 ms26 anther shape TO:0000214 PMID:24112765 IMP T GRMZM2G091822 Anthers shriveled Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 113518 ms26 male sterility TO:0000437 PMID:24112765 IMP T GRMZM2G091822 Male sterile Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 113518 ms26 pollen free TO:0000245 PMID:24112765 IMP T GRMZM2G091822 Pollen absent or aborted. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 114025 rtcs1 lateral root number TO:0001013 PMID:23843603 IMP T GRMZM2G092542 few or no secondary roots Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G026930 Aleurone layer is colored Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G026930 no color in aleurone Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 anther color TO:0000187 PMID:21423772 IMP T GRMZM2G026930 anthers are green Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G026930 lack of anthocyanins in aleurone Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 pericarp color TO:0000707 PMID:21423772 IMP T GRMZM2G026930 The pericarp is brown Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 seedling vigor TO:0000280 PMID:21423772 IMP T GRMZM2G026930 seedling dies Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12000 a1 style color TO:0000676 PMID:21423772 IMP T GRMZM2G026930 silks are green Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12006 a2 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G345717 Aleurone layer is colored Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12006 a2 anther color TO:0000187 PMID:21423772 IMP T GRMZM2G345717 anthers are green Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 12028 ae1 endosperm quality TO:0000587 PMID:21423772 IMP T GRMZM2G032628 kernel is sweet at milk stage; typical of su1 Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12028 ae1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G032628 starch debranching enzyme I absent in developing endosperm Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12028 ae1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G032628 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12029 afd1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G059037 Anthers shriveled Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12029 afd1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G059037 Male sterile Gene taxon:4577 20150527 Ethan Johnson MaizeGDB 12029 afd1 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G059037 Pollen absent or aborted. Gene taxon:4577 20150527 Ethan Johnson -!MaizeGDB 12048 an1 PMID: 21423772 IMP GRMZM2G081554 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 flower development trait TO:0000622 PMID: 21423772 IMP T GRMZM2G081554 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 internode length TO:0000145 PMID: 21423772 IMP T GRMZM2G081554 internode elongation reduced Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 leaf length TO:0000135 PMID: 21423772 IMP T GRMZM2G081554 short leaves Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G081554 broad leaves Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G081554 leaf width excess Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 phyllotaxy TO:0006014 PMID: 21423772 IMP T GRMZM2G081554 compact leaves Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G081554 Dwarf Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G081554 The plant is shorter Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12048 an1 tassel branch number TO:0000813 PMID: 21423772 IMP T GRMZM2G081554 tassel branches few Gene taxon:4577 20150527 Ethan Johnson -MaizeGDB 12065 b1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G172795 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G172795 anthocyanin pigmented sectors in aleurone Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G172795 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12065 b1 stem color TO:0000056 PMID: 21423772 IMP T GRMZM2G172795 striped stems Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12065 b1 variegated leaf TO:0000069 PMID: 21423772 IMP T GRMZM2G172795 striped leaves Gene taxon:4577 20150616 Ethan Johnson -!MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 pistils abort, no silks Gene taxon:4577 20150529 Ethan Johnson! -!MaizeGDB 12070 bd1 PMID: 21423772 IMP GRMZM2G307119 silks absent Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12070 bd1 fascicled ear TO:0000715 PMID: 21423772 IMP T GRMZM2G307119 ear is branched Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12077 bk2 leaf shattering TO:0000108 PMID: 17932309 IMP T GRMZM2G109326 leaves shatter after moderate winds Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12077 bk2 plant structure anatomy and morphology trait TO:0000839 PMID: 17932309 IMP T GRMZM2G109326 brittle plant parts after 4-leaf stage Gene taxon:4577 20150529 Ethan Johnson -!MaizeGDB 12079 bm1 PMID: 21423772 IMP GRMZM5G844562 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12079 bm1 cob color TO:0000924 PMID: 21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12079 bm1 leaf midrib color TO:0000720 PMID: 21423772 IMP T GRMZM5G844562 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12079 bm1 lignin content TO:0000731 PMID: 21423772 IMP T GRMZM5G844562 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12079 bm1 root color TO:0000065 PMID: 21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of roots Gene taxon:4577 20150529 Ethan Johnson -!MaizeGDB 12081 bm3 PMID: 21423772 IMP AC196475.3_FG004 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12081 bm3 cob color TO:0000924 PMID: 21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12081 bm3 leaf midrib color TO:0000720 PMID: 21423772 IMP T AC196475.3_FG004 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12081 bm3 lignin content TO:0000731 PMID: 21423772 IMP T AC196475.3_FG004 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12081 bm3 root color TO:0000065 PMID: 21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of roots Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID: 21423772 IMP GRMZM2G144081 mature kernel brittle Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID: 21423772 IMP T GRMZM2G144081 texture of endosperm is brittle Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G144081 endosperm is opaque Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 fruit shape TO:0002628 PMID: 21423772 IMP T GRMZM2G144081 mature kernel angular Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G144081 endosperm collapsed Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G144081 mature kernel collapsed Gene taxon:4577 20150529 Ethan Johnson -!MaizeGDB 12092 T2 PMID: 25600571 IMP GRMZM2G068506 No mRNA is produced from the T2 gene Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12098 bz1 aleurone layer color TO:0000943 PMID: 25201957 IMP T GRMZM2G165390 Aleurone color is bronze Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12098 bz1 fluorescence related trait TO:0012006 PMID: 25201957 IMP T GRMZM2G165390 Shedding tassels viewed under UV light show bright yellow fluorescence in the anthers Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12098 bz1 plant color TO:0000708 PMID: 25201957 IMP T GRMZM2G165390 Whole plant color can be bronze Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12099 bz2 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G016241 Aleurone color is bronze Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12099 bz2 plant color TO:0000708 PMID: 21423772 IMP T GRMZM2G016241 Whole plant color can be bronze Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 12101 c1 aleurone layer appearance TO:0000944 PMID: 21423772 IMP T GRMZM2G005066 aleurone layer mottled Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12101 c1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G005066 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 12048 an1 PMID:21423772 IMP GRMZM2G081554 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 flower development trait TO:0000622 PMID:21423772 IMP T GRMZM2G081554 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G081554 internode elongation reduced Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 leaf length TO:0000135 PMID:21423772 IMP T GRMZM2G081554 short leaves Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G081554 broad leaves Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G081554 leaf width excess Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 phyllotaxy TO:0006014 PMID:21423772 IMP T GRMZM2G081554 compact leaves Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G081554 Dwarf Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G081554 The plant is shorter Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12048 an1 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G081554 tassel branches few Gene taxon:4577 20150527 Ethan Johnson +MaizeGDB 12065 b1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G172795 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G172795 anthocyanin pigmented sectors in aleurone Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12065 b1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G172795 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12065 b1 stem color TO:0000056 PMID:21423772 IMP T GRMZM2G172795 striped stems Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12065 b1 variegated leaf TO:0000069 PMID:21423772 IMP T GRMZM2G172795 striped leaves Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 12070 bd1 PMID:21423772 IMP GRMZM2G307119 pistils abort, no silks Gene taxon:4577 20150529 Ethan Johnson! +!MaizeGDB 12070 bd1 PMID:21423772 IMP GRMZM2G307119 silks absent Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12070 bd1 fascicled ear TO:0000715 PMID:21423772 IMP T GRMZM2G307119 ear is branched Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12077 bk2 leaf shattering TO:0000108 PMID:17932309 IMP T GRMZM2G109326 leaves shatter after moderate winds Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12077 bk2 plant structure anatomy and morphology trait TO:0000839 PMID:17932309 IMP T GRMZM2G109326 brittle plant parts after 4-leaf stage Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12079 bm1 PMID:21423772 IMP GRMZM5G844562 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12079 bm1 cob color TO:0000924 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12079 bm1 leaf midrib color TO:0000720 PMID:21423772 IMP T GRMZM5G844562 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12079 bm1 lignin content TO:0000731 PMID:21423772 IMP T GRMZM5G844562 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12079 bm1 root color TO:0000065 PMID:21423772 IMP T GRMZM5G844562 brown pigment in vascular bundles of roots Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12081 bm3 PMID:21423772 IMP AC196475.3_FG004 brown pigment in vascular bundles of the sheath, midribs, and blades Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12081 bm3 cob color TO:0000924 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of cob Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12081 bm3 leaf midrib color TO:0000720 PMID:21423772 IMP T AC196475.3_FG004 brown pigment first visible as a reddish-brown pigmentation of the midrib at the 4-6 leaf stage. Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12081 bm3 lignin content TO:0000731 PMID:21423772 IMP T AC196475.3_FG004 The amount of lignin in the leaves is reduced Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12081 bm3 root color TO:0000065 PMID:21423772 IMP T AC196475.3_FG004 brown pigment in vascular bundles of roots Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID:21423772 IMP GRMZM2G144081 mature kernel brittle Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 brittle endosperm TO:0000713 PMID:21423772 IMP T GRMZM2G144081 texture of endosperm is brittle Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G144081 endosperm is opaque Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 fruit shape TO:0002628 PMID:21423772 IMP T GRMZM2G144081 mature kernel angular Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G144081 endosperm collapsed Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12091 T1 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G144081 mature kernel collapsed Gene taxon:4577 20150529 Ethan Johnson +!MaizeGDB 12092 T2 PMID:25600571 IMP GRMZM2G068506 No mRNA is produced from the T2 gene Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12098 bz1 aleurone layer color TO:0000943 PMID:25201957 IMP T GRMZM2G165390 Aleurone color is bronze Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12098 bz1 fluorescence related trait TO:0012006 PMID:25201957 IMP T GRMZM2G165390 Shedding tassels viewed under UV light show bright yellow fluorescence in the anthers Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12098 bz1 plant color TO:0000708 PMID:25201957 IMP T GRMZM2G165390 Whole plant color can be bronze Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12099 bz2 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G016241 Aleurone color is bronze Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12099 bz2 plant color TO:0000708 PMID:21423772 IMP T GRMZM2G016241 Whole plant color can be bronze Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 12101 c1 aleurone layer appearance TO:0000944 PMID:21423772 IMP T GRMZM2G005066 aleurone layer mottled Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12101 c1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G005066 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 12102 c2 aleurone layer appearance TO:0000944 PMID:21423772 IMP GRMZM2G422750 aleurone layer mottled Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 basal tiller number TO:0001004 PMID: 21987797 IMP T GRMZM2G022489 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 basic vegetative phase TO:0000461 PMID: 21987797 IMP T GRMZM2G022489 often vegetative leaves in the ear and tassle Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 ear length TO:0000431 PMID: 21987797 IMP T GRMZM2G022489 highly reduced ears Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 leaf width TO:0000370 PMID: 21987797 IMP T GRMZM2G022489 narrow leaves Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21987797 IMP T GRMZM2G022489 highly reduced tassel Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12115 cg1 tillering ability TO:0000329 PMID: 21987797 IMP T GRMZM2G022489 extreme tillering Gene taxon:4577 20150616 Ethan Johnson -!MaizeGDB 12141 d3 IMP GRMZM2G093195 andromonoecious Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12115 cg1 basal tiller number TO:0001004 PMID:21987797 IMP T GRMZM2G022489 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12115 cg1 basic vegetative phase TO:0000461 PMID:21987797 IMP T GRMZM2G022489 often vegetative leaves in the ear and tassle Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12115 cg1 ear length TO:0000431 PMID:21987797 IMP T GRMZM2G022489 highly reduced ears Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12115 cg1 leaf width TO:0000370 PMID:21987797 IMP T GRMZM2G022489 narrow leaves Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12115 cg1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21987797 IMP T GRMZM2G022489 highly reduced tassel Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12115 cg1 tillering ability TO:0000329 PMID:21987797 IMP T GRMZM2G022489 extreme tillering Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 12141 d3 PMID:25774204 IMP GRMZM2G093195 andromonoecious Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G093195 internode elongation reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G093195 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G093195 compact leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G093195 broad leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12141 d3 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G093195 The plant is shorter Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Plant does not reposnd to giberellin Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12143 d8 PMID: 21423772 IMP GRMZM2G144744 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 floret anatomy and morphology trait TO:0000274 PMID: 21423772 IMP T GRMZM2G144744 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 leaf height TO:0000541 PMID: 21423772 IMP T GRMZM2G144744 short leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 leaf size TO:0002637 PMID: 21423772 IMP T GRMZM2G144744 compact leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G144744 broad leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G144744 leaf width excess Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G144744 Dwarf Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G144744 whole plant short Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 tassel branch number TO:0000813 PMID: 21423772 IMP T GRMZM2G144744 tassel branches few Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 tassel inflorescence circumference TO:0000796 PMID: 21423772 IMP T GRMZM2G144744 compact tassel Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12143 d8 tiller number TO:0000346 PMID: 21423772 IMP T GRMZM2G144744 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 andromonoecious Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12144 d9 PMID: 21423772 IMP GRMZM2G024973 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 leaf height TO:0000541 PMID: 21423772 IMP T GRMZM2G024973 short leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 leaf size TO:0002637 PMID: 21423772 IMP T GRMZM2G024973 compact leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G024973 broad leaves Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 plant height TO:0000207 PMID: 21423772 IMP GRMZM2G024973 whole plant short Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12144 d9 tassel inflorescence circumference TO:0000796 PMID: 21423772 IMP T GRMZM2G024973 compact tassel Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12148 dek1 chalky endosperm TO:0000266 PMID: 21423772 IMP T GRMZM2G321753 endosperm has a soft, chalk-like texture Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 endosperm anatomy and morphology trait TO:0000575 PMID: 21423772 IMP T GRMZM2G321753 abnormal endosperm Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G321753 endosperm reduced yellow color Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID: 21423772 IMP T GRMZM2G321753 endosperm opaque appearance Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID: 21423772 IMP GRMZM2G321753 floury kernel Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 fruit color TO:0002617 PMID: 21423772 IMP T GRMZM2G321753 colorless kernel Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 fruit shape TO:0002628 PMID: 21423772 IMP GRMZM2G321753 round kernel Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 fruit size TO:0002625 PMID: 21423772 IMP T GRMZM2G321753 Generally a reduced size kernel Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 12148 dek1 grain shape TO:0002730 PMID: 21423772 IMP GRMZM2G321753 thin kernel Gene taxon:4577 20150617 Ethan Johnson +!MaizeGDB 12143 d8 PMID:21423772 IMP GRMZM2G144744 Plant does not reposnd to giberellin Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12143 d8 PMID:21423772 IMP GRMZM2G144744 Producing both bisexual and male flowers on the same plant. Synonym: andromonoecious. Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12143 d8 PMID:21423772 IMP GRMZM2G144744 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 floret anatomy and morphology trait TO:0000274 PMID:21423772 IMP T GRMZM2G144744 Ear florets are hermaphroditic; most easily observed in unfertilized ear. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G144744 short leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G144744 compact leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G144744 broad leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G144744 leaf width excess Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G144744 Dwarf Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G144744 whole plant short Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 tassel branch number TO:0000813 PMID:21423772 IMP T GRMZM2G144744 tassel branches few Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 tassel inflorescence circumference TO:0000796 PMID:21423772 IMP T GRMZM2G144744 compact tassel Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12143 d8 tiller number TO:0000346 PMID:21423772 IMP T GRMZM2G144744 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12144 d9 PMID:21423772 IMP GRMZM2G024973 andromonoecious Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12144 d9 PMID:21423772 IMP GRMZM2G024973 anthers in the ears Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12144 d9 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G024973 short leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12144 d9 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G024973 compact leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12144 d9 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G024973 broad leaves Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12144 d9 plant height TO:0000207 PMID:21423772 IMP GRMZM2G024973 whole plant short Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12144 d9 tassel inflorescence circumference TO:0000796 PMID:21423772 IMP T GRMZM2G024973 compact tassel Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12148 dek1 chalky endosperm TO:0000266 PMID:21423772 IMP T GRMZM2G321753 endosperm has a soft, chalk-like texture Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 endosperm anatomy and morphology trait TO:0000575 PMID:21423772 IMP T GRMZM2G321753 abnormal endosperm Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G321753 endosperm reduced yellow color Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID:21423772 IMP T GRMZM2G321753 endosperm opaque appearance Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 floury endosperm TO:0000104 PMID:21423772 IMP GRMZM2G321753 floury kernel Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 fruit color TO:0002617 PMID:21423772 IMP T GRMZM2G321753 colorless kernel Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 fruit shape TO:0002628 PMID:21423772 IMP GRMZM2G321753 round kernel Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 fruit size TO:0002625 PMID:21423772 IMP T GRMZM2G321753 Generally a reduced size kernel Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 12148 dek1 grain shape TO:0002730 PMID:21423772 IMP GRMZM2G321753 thin kernel Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 12197 du1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G141399 starch debranching enzyme I absent in developing endosperm Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12197 du1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G141399 kernel is sweet at milk stage; typical of su1 Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12197 du1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G141399 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150618 Ethan Johnson @@ -126,44 +126,44 @@ MaizeGDB 12225 fl2 chalky endosperm TO:0000266 PMID:21423772 IMP T GRMZM2G39768 MaizeGDB 12225 fl2 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G397687 endosperm reduced yellow color Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12225 fl2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm is opaque Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12225 fl2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G397687 endosperm opaque appearance Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID: 25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are less membranous than normal. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID: 25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are smaller than normal. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12229 g2 leaf sheath color TO:0002724 PMID: 25725436 IMP T GRMZM2G087804 distinct yellow cast on sheath Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12229 g2 plant color TO:0000708 PMID: 25725436 IMP T GRMZM2G087804 plant with distinct yellow cast Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12229 g2 variegated leaf TO:0000069 PMID: 25725436 IMP T GRMZM2G087804 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12242 gl1 inflorescence waxiness TO:0000787 PMID: 21423772 IMP T GRMZM2G114642 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12242 gl1 leaf gloss TO:0000709 PMID: 21423772 IMP T GRMZM2G114642 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12247 gl15 inflorescence waxiness TO:0000787 PMID: 21423772 IMP T GRMZM2G160730 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12247 gl15 leaf gloss TO:0000709 PMID: 21423772 IMP T GRMZM2G160730 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12252 gl2 inflorescence waxiness TO:0000787 PMID: 21423772 IMP T GRMZM2G098239 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12252 gl2 leaf gloss TO:0000709 PMID: 21423772 IMP T GRMZM2G098239 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12263 gl8 inflorescence waxiness TO:0000787 PMID: 21423772 IMP T AC205703.4_FG006 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12263 gl8 leaf gloss TO:0000709 PMID: 21423772 IMP T AC205703.4_FG006 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12290 hcf106 fluorescence related trait TO:0012006 PMID: 25725436 IMP T GRMZM5G898735 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID: 24847713 IMP T GRMZM5G881887 resistant to Cochliobolus carbonum Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID: 24847713 IMP T GRMZM5G881887 resistant to Colletotrichum graminicola Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12328 hm2 fungal disease resistance TO:0000439 PMID: 24847713 IMP T GRMZM2G086773 resistant to Cochliobolus carbonum Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1232891 wtf1 leaf color TO:0000326 PMID: 25725436 IMP T GRMZM2G403797 Seedling leaves are white. Gene taxon:4577 20150622 -MaizeGDB 1232893 why1 leaf color TO:0000326 PMID: 25599833 IMP T GRMZM2G155662 Seedling leaves are white. Gene taxon:4577 20150622 -MaizeGDB 1232899 ppr5 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G025409 Seedling leaves are white. Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 loose pericarp Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 1233612 emp4 PMID: 21423772 IMP GRMZM2G092198 small embryo Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1233612 emp4 fruit anatomy and morphology trait TO:0002629 PMID: 21423772 IMP T GRMZM2G092198 kernel is angular Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G092198 endosperm much reduced Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID: 21423772 IMP T GRMZM2G092198 kernel is collapsed Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are less membranous than normal. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12229 g2 chloroplast development trait TO:0002715 PMID:25725436 IMP T GRMZM2G087804 Chloroplasts in bundle sheath cells are smaller than normal. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12229 g2 leaf sheath color TO:0002724 PMID:25725436 IMP T GRMZM2G087804 distinct yellow cast on sheath Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12229 g2 plant color TO:0000708 PMID:25725436 IMP T GRMZM2G087804 plant with distinct yellow cast Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12229 g2 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G087804 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12242 gl1 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G114642 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12242 gl1 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G114642 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12247 gl15 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G160730 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12247 gl15 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G160730 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12252 gl2 inflorescence waxiness TO:0000787 PMID:21423772 IMP T GRMZM2G098239 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12252 gl2 leaf gloss TO:0000709 PMID:21423772 IMP T GRMZM2G098239 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12263 gl8 inflorescence waxiness TO:0000787 PMID:21423772 IMP T AC205703.4_FG006 Cuticular wax on epidermis of juvenile leaves is altered Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12263 gl8 leaf gloss TO:0000709 PMID:21423772 IMP T AC205703.4_FG006 Juvenile leaves have a glossy surface Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12290 hcf106 fluorescence related trait TO:0012006 PMID:25725436 IMP T GRMZM5G898735 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Cochliobolus carbonum Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12327 hm1 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM5G881887 resistant to Colletotrichum graminicola Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12328 hm2 fungal disease resistance TO:0000439 PMID:24847713 IMP T GRMZM2G086773 resistant to Cochliobolus carbonum Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 1232891 wtf1 leaf color TO:0000326 PMID:25725436 IMP T GRMZM2G403797 Seedling leaves are white. Gene taxon:4577 20150622 +MaizeGDB 1232893 why1 leaf color TO:0000326 PMID:25599833 IMP T GRMZM2G155662 Seedling leaves are white. Gene taxon:4577 20150622 +MaizeGDB 1232899 ppr5 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G025409 Seedling leaves are white. Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 1233612 emp4 PMID:21423772 IMP GRMZM2G092198 loose pericarp Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 1233612 emp4 PMID:21423772 IMP GRMZM2G092198 small embryo Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 1233612 emp4 fruit anatomy and morphology trait TO:0002629 PMID:21423772 IMP T GRMZM2G092198 kernel is angular Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G092198 endosperm much reduced Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 1233612 emp4 shrunken endosperm TO:0000100 PMID:21423772 IMP T GRMZM2G092198 kernel is collapsed Gene taxon:4577 20150618 Ethan Johnson !MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 aborted kernel Gene taxon:4577 20150618 Ethan Johnson !MaizeGDB 12340 ig1 PMID:21423772 IMP GRMZM2G118250 kernel with loose pericarp Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 fertility related trait TO:0000420 PMID:21423772 IMP T GRMZM2G118250 Male flowers have reduced fertility Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 fruit anatomy and morphology trait TO:0002629 PMID:21423772 IMP T GRMZM2G118250 kernel with loose pericarp Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 12340 ig1 seed size TO:0000391 PMID:21423772 IMP T GRMZM2G118250 kernal smaller in size Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12341 ij1 leaf color TO:0000326 PMID: 25725436 IMP T GRMZM2G004583 Seedling leaves are white. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12341 ij1 variegated leaf TO:0000069 PMID: 25725436 IMP T GRMZM2G004583 Leaf is mostly white, with short, thin, green, longitudinal stripes (in the direction of the lateral veins), Gene taxon:4577 20150618 Ethan Johnson -!MaizeGDB 12352 kn1 PMID: 24218490 IMP GRMZM2G017087 The number of ovules that develop into a seed is reduced Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12352 kn1 leaf vein anatomy and morphology trait TO:0000820 PMID: 24218490 IMP T GRMZM2G017087 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12352 kn1 spikelet number TO:0000456 PMID: 24218490 IMP T GRMZM2G017087 number of tassel spikelets greatly reduced Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12352 kn1 sterility or fertility trait TO:0000392 PMID: 24218490 IMP T GRMZM2G017087 pollen nonfunctional Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12386 lg1 auricleless TO:0000226 PMID: 25516601 IMP T GRMZM2G036297 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12386 lg1 leaf attitude TO:0000824 PMID: 25516601 IMP T GRMZM2G036297 leaves upright Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12341 ij1 leaf color TO:0000326 PMID:25725436 IMP T GRMZM2G004583 Seedling leaves are white. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12341 ij1 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G004583 Leaf is mostly white, with short, thin, green, longitudinal stripes (in the direction of the lateral veins), Gene taxon:4577 20150618 Ethan Johnson +!MaizeGDB 12352 kn1 PMID:24218490 IMP GRMZM2G017087 The number of ovules that develop into a seed is reduced Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12352 kn1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G017087 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12352 kn1 spikelet number TO:0000456 PMID:24218490 IMP T GRMZM2G017087 number of tassel spikelets greatly reduced Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12352 kn1 sterility or fertility trait TO:0000392 PMID:24218490 IMP T GRMZM2G017087 pollen nonfunctional Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12386 lg1 auricleless TO:0000226 PMID:25516601 IMP T GRMZM2G036297 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12386 lg1 leaf attitude TO:0000824 PMID:25516601 IMP T GRMZM2G036297 leaves upright Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12387 lg2 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G060216 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12387 lg2 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G060216 leaves upright Gene taxon:4577 20150619 Ethan Johnson !MaizeGDB 12388 lg3 PMID:21423772 IMP GRMZM2G087741 more ligule Gene taxon:4577 20150619 Ethan Johnson @@ -171,57 +171,57 @@ MaizeGDB 12388 lg3 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G087741 aur MaizeGDB 12388 lg3 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G087741 leaves upright Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12389 lg4 auricleless TO:0000226 PMID:21423772 IMP T GRMZM2G094241 auricle of the leaf missing Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12389 lg4 leaf attitude TO:0000824 PMID:21423772 IMP T GRMZM2G094241 leaves upright Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have elliptical lesions Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Leaves have round lesions Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12391 lls1 PMID: 21423772 IMP GRMZM2G339563 Premature plant death Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 chlorophyll content TO:0000495 PMID: 21423772 IMP T GRMZM2G339563 Chlorotic leaf lesion Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 leaf necrosis TO:0000652 PMID: 21423772 IMP T GRMZM2G339563 necrotic leaf lesions Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12391 lls1 leaf senescence TO:0000249 PMID: 21423772 IMP T GRMZM2G339563 Premature leaf senescence Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12469 na1 anatomy and morphology trait TO:0000017 PMID: 22106275 IMP T JN020030.1 erect plant Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12469 na1 plant growth hormone sensitivity TO:0000401 PMID: 22106275 IMP T JN020030.1 no response to gibberellins Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12469 na1 plant height TO:0000207 PMID: 22106275 IMP T JN020030.1 short plant Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12495 o2 glutinous endosperm TO:0000098 PMID: 23586588 IMP T GRMZM2G015534 endosperm is opaque Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12515 oy1 variegated leaf TO:0000069 PMID: 25725436 IMP T GRMZM2G419806 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12517 p1 style color TO:0000676 PMID: 25250036 IMP T GRMZM2G084799 Silks brown sooner than normal Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12553 pl1 PMID: 21423772 IMP GRMZM2G701063 striped stems Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G701063 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12553 pl1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12553 pl1 variegated leaf TO:0000069 PMID: 21423772 IMP T GRMZM2G701063 striped leaves Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12562 ps1 cotyledon TO:0000750 PMID: 21423772 IMP T GRMZM5G849107 pink coloration of scutellum Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12562 ps1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM5G849107 pink coloration of endosperm Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12562 ps1 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM5G849107 Seedling leaves are white. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12562 ps1 vivipary TO:0000619 PMID: 21423772 IMP T GRMZM5G849107 viviparous embryo Gene taxon:4577 20150619 Austin Meier +!MaizeGDB 12391 lls1 PMID:21423772 IMP GRMZM2G339563 Leaves have elliptical lesions Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12391 lls1 PMID:21423772 IMP GRMZM2G339563 Leaves have round lesions Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12391 lls1 PMID:21423772 IMP GRMZM2G339563 Premature plant death Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12391 lls1 chlorophyll content TO:0000495 PMID:21423772 IMP T GRMZM2G339563 Chlorotic leaf lesion Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12391 lls1 leaf necrosis TO:0000652 PMID:21423772 IMP T GRMZM2G339563 necrotic leaf lesions Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12391 lls1 leaf senescence TO:0000249 PMID:21423772 IMP T GRMZM2G339563 Premature leaf senescence Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12469 na1 anatomy and morphology trait TO:0000017 PMID:22106275 IMP T JN020030.1 erect plant Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12469 na1 plant growth hormone sensitivity TO:0000401 PMID:22106275 IMP T JN020030.1 no response to gibberellins Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12469 na1 plant height TO:0000207 PMID:22106275 IMP T JN020030.1 short plant Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12495 o2 glutinous endosperm TO:0000098 PMID:23586588 IMP T GRMZM2G015534 endosperm is opaque Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12515 oy1 variegated leaf TO:0000069 PMID:25725436 IMP T GRMZM2G419806 Normal green along veins (vascular bundles); tissue between the veins is pale green or grayish green, giving the leaf a striped appearance Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12517 p1 style color TO:0000676 PMID:25250036 IMP T GRMZM2G084799 Silks brown sooner than normal Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 12553 pl1 PMID:21423772 IMP GRMZM2G701063 striped stems Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G701063 blotches of anthocyanin pigmentation due to cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12553 pl1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM2G701063 cell to cell variability in the levels of anthocyanin production. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12553 pl1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G701063 Aleuron has blotches of anthocyanin pigmentation Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12553 pl1 variegated leaf TO:0000069 PMID:21423772 IMP T GRMZM2G701063 striped leaves Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12562 ps1 cotyledon TO:0000750 PMID:21423772 IMP T GRMZM5G849107 pink coloration of scutellum Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12562 ps1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM5G849107 pink coloration of endosperm Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12562 ps1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM5G849107 Seedling leaves are white. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12562 ps1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM5G849107 viviparous embryo Gene taxon:4577 20150619 Austin Meier MaizeGDB 12573 tan1 cell cycle trait TO:0000728 PMID:21423772 IMP T GRMZM2G039113 irregular cell division placement in leaf epidermis (results in irregularly shaped cells) Gene taxon:4577 20150622 MaizeGDB 12573 tan1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G039113 leaves short Gene taxon:4577 20150622 MaizeGDB 12573 tan1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G039113 plant short Gene taxon:4577 20150622 -MaizeGDB 12576 r1 aleurone layer appearance TO:0000944 PMID: 21423772 IMP GRMZM5G822829 aleurone layer mottled Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM5G822829 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM5G822829 Aleurone layer is colored Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID: 21423772 IMP T GRMZM5G822829 anthers are green Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID: 21423772 IMP T GRMZM5G822829 pale pink to red anthers Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12576 r1 anther color TO:0000187 PMID: 21423772 IMP T GRMZM5G822829 red anthers Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID: 21423772 IMP T GRMZM5G822829 Strong anthocyanin on leaf blade after 4-6 leaf stage Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12576 r1 pericarp color TO:0000707 PMID: 21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 12577 ra1 spikelet anatomy and morphology trait TO:0000657 PMID: 21423772 IMP T GRMZM2G003927 abnormality in spikelet Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12578 ra2 spikelet anatomy and morphology trait TO:0000657 PMID: 21423772 IMP T AC233943.1_FG002 abnormality in spikelet Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12579 ra3 fascicled ear TO:0000715 PMID: 21423772 IMP T GRMZM2G014729 ear is branched Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12576 r1 aleurone layer appearance TO:0000944 PMID:21423772 IMP GRMZM5G822829 aleurone layer mottled Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12576 r1 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM5G822829 Aleurone layer is colored Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 anthers are green Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 pale pink to red anthers Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12576 r1 anther color TO:0000187 PMID:21423772 IMP T GRMZM5G822829 red anthers Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. Gene taxon:4577 20150616 Ethan Johnson +MaizeGDB 12576 r1 anthocyanin content TO:0000071 PMID:21423772 IMP T GRMZM5G822829 Strong anthocyanin on leaf blade after 4-6 leaf stage Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12576 r1 pericarp color TO:0000707 PMID:21423772 IMP T GRMZM5G822829 Anthocyanin pigment in pericarp. Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 12577 ra1 spikelet anatomy and morphology trait TO:0000657 PMID:21423772 IMP T GRMZM2G003927 abnormality in spikelet Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12578 ra2 spikelet anatomy and morphology trait TO:0000657 PMID:21423772 IMP T AC233943.1_FG002 abnormality in spikelet Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12579 ra3 fascicled ear TO:0000715 PMID:21423772 IMP T GRMZM2G014729 ear is branched Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G058675 Anthers shriveled Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G058675 Male sterile Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 12595 rf2 pollen free TO:0000245 PMID:21423772 IMP T GRMZM2G058675 Pollen absent or aborted. Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 12602 rgd1 IMP GRMZM2G020187 leaf blade absent Gene taxon:4577 20150619 Austin Meier -!MaizeGDB 12602 rgd1 PMID: 21423772 IMP GRMZM2G020187 difficulty emerging Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12602 rgd1 leaf shape TO:0000492 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves divided Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves narrow Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G020187 seedling leaves thread-like Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID: 25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID: 25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID: 25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12616 rs1 leaf sheath anatomy and morphology trait TO:0000835 PMID: 24218490 IMP T GRMZM2G028041 leaf sheath is rough Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12616 rs1 leaf vein anatomy and morphology trait TO:0000820 PMID: 24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150619 Austin Meier -MaizeGDB 12617 rs2 leaf sheath anatomy and morphology trait TO:0000835 PMID: 21423772 IMP T GRMZM2G403620 leaf sheath is rough Gene taxon:4577 20150619 -MaizeGDB 12617 rs2 ligule anatomy and morphology trait TO:0002748 PMID: 21423772 IMP T GRMZM2G403620 abnormality of ligule Gene taxon:4577 20150619 +!MaizeGDB 12602 rgd1 PMID:25774204 IMP GRMZM2G020187 leaf blade absent Gene taxon:4577 20150619 Austin Meier +!MaizeGDB 12602 rgd1 PMID:21423772 IMP GRMZM2G020187 difficulty emerging Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12602 rgd1 leaf shape TO:0000492 PMID:21423772 IMP T GRMZM2G020187 seedling leaves divided Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves narrow Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12602 rgd1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G020187 seedling leaves thread-like Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia polysora Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 Plants are partially resistance to Puccinia sorghi Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12609 rp1 disease resistance TO:0000112 PMID:25805314 IMP T AC152495.1_FG002 resistant to Puccinia sorghi Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12616 rs1 leaf sheath anatomy and morphology trait TO:0000835 PMID:24218490 IMP T GRMZM2G028041 leaf sheath is rough Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12616 rs1 leaf vein anatomy and morphology trait TO:0000820 PMID:24218490 IMP T GRMZM2G028041 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150619 Austin Meier +MaizeGDB 12617 rs2 leaf sheath anatomy and morphology trait TO:0000835 PMID:21423772 IMP T GRMZM2G403620 leaf sheath is rough Gene taxon:4577 20150619 +MaizeGDB 12617 rs2 ligule anatomy and morphology trait TO:0002748 PMID:21423772 IMP T GRMZM2G403620 abnormality of ligule Gene taxon:4577 20150619 MaizeGDB 12664 su1 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G138060 starch debranching enzyme I absent in developing endosperm Gene taxon:4577 20150619 MaizeGDB 12664 su1 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G138060 kernel is sweet at milk stage; typical of su1 Gene taxon:4577 20150619 MaizeGDB 12664 su1 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G138060 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150619 @@ -229,15 +229,15 @@ MaizeGDB 12665 su2 enzyme activity trait TO:0000599 PMID:21423772 IMP T GRMZM2G MaizeGDB 12665 su2 glutinous endosperm TO:0000098 PMID:21423772 IMP T GRMZM2G348551 endosperm is opaque Gene taxon:4577 20150622 MaizeGDB 12665 su2 sugary endosperm TO:0000099 PMID:21423772 IMP T GRMZM2G348551 kernel is sweet at milk stage; typical of su1 Gene taxon:4577 20150622 MaizeGDB 12665 su2 wrinkled seed TO:0000718 PMID:21423772 IMP T GRMZM2G348551 kernel is wrinkled, hard and translucent when dry Gene taxon:4577 20150622 -MaizeGDB 12671 tb1 tiller number TO:0000346 PMID: 25909039 IMP T AC233950.1_FG002 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150622 -MaizeGDB 12673 te1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G085113 abnormality of the tassel Gene taxon:4577 20150622 -!MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 seeds in tassel Gene taxon:4577 20150622 -!MaizeGDB 12690 ts1 PMID: 21423772 IMP GRMZM2G104843 silks in tassel Gene taxon:4577 20150622 -MaizeGDB 12690 ts1 floret anatomy and morphology trait TO:0000274 PMID: 21423772 IMP T GRMZM2G104843 defective floret Gene taxon:4577 20150622 -MaizeGDB 12690 ts1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G104843 abnormality of the tassel Gene taxon:4577 20150622 -!MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 seeds in tassel Gene taxon:4577 20150622 -!MaizeGDB 12691 ts2 PMID: 21423772 IMP GRMZM2G455809 silks in tassel Gene taxon:4577 20150622 -MaizeGDB 12691 ts2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G455809 abnormality of the tassel Gene taxon:4577 20150622 +MaizeGDB 12671 tb1 tiller number TO:0000346 PMID:25909039 IMP T AC233950.1_FG002 Plant produces many lateral branches (tillers) at its base. Gene taxon:4577 20150622 +MaizeGDB 12673 te1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G085113 abnormality of the tassel Gene taxon:4577 20150622 +!MaizeGDB 12690 ts1 PMID:21423772 IMP GRMZM2G104843 seeds in tassel Gene taxon:4577 20150622 +!MaizeGDB 12690 ts1 PMID:21423772 IMP GRMZM2G104843 silks in tassel Gene taxon:4577 20150622 +MaizeGDB 12690 ts1 floret anatomy and morphology trait TO:0000274 PMID:21423772 IMP T GRMZM2G104843 defective floret Gene taxon:4577 20150622 +MaizeGDB 12690 ts1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G104843 abnormality of the tassel Gene taxon:4577 20150622 +!MaizeGDB 12691 ts2 PMID:21423772 IMP GRMZM2G455809 seeds in tassel Gene taxon:4577 20150622 +!MaizeGDB 12691 ts2 PMID:21423772 IMP GRMZM2G455809 silks in tassel Gene taxon:4577 20150622 +MaizeGDB 12691 ts2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G455809 abnormality of the tassel Gene taxon:4577 20150622 !MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 seeds in tassel Gene taxon:4577 20150622 !MaizeGDB 12692 ts4 PMID:21423772 IMP GRMZM5G803935 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12692 ts4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G803935 abnormality of the tassel Gene taxon:4577 20150622 @@ -245,72 +245,72 @@ MaizeGDB 12692 ts4 tassel inflorescence anatomy and morphology trait TO:0000788 !MaizeGDB 12694 ts6 PMID:21423772 IMP GRMZM5G862109 silks in tassel Gene taxon:4577 20150622 MaizeGDB 12694 ts6 embryo development trait TO:0000620 PMID:21423772 IMP T GRMZM5G862109 The embryo develops on the wrong side of the kernel Gene taxon:4577 20150622 MaizeGDB 12694 ts6 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM5G862109 abnormality of the tassel Gene taxon:4577 20150622 -!MaizeGDB 12696 tu1 PMID: 24980907 IMP NM_001111678.1 kernels completely enclosed in long glumes Gene taxon:4577 20150622 -MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID: 24980907 IMP T NM_001111678.1 tassel glumes coarse Gene taxon:4577 20150622 -MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID: 24980907 IMP T NM_001111678.1 tassel glumes large Gene taxon:4577 20150622 +!MaizeGDB 12696 tu1 PMID:24980907 IMP NM_001111678.1 kernels completely enclosed in long glumes Gene taxon:4577 20150622 +MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes coarse Gene taxon:4577 20150622 +MaizeGDB 12696 tu1 glume anatomy and morphology trait TO:0000869 PMID:24980907 IMP T NM_001111678.1 tassel glumes large Gene taxon:4577 20150622 MaizeGDB 12731 vp1 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G133398 kernels germinate while still on the ear Gene taxon:4577 20150622 -MaizeGDB 12733 vp5 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G410515 Seedling leaves are white. Gene taxon:4577 20150622 -MaizeGDB 12733 vp5 vivipary TO:0000619 PMID: 21423772 IMP T GRMZM2G410515 kernels germinate while still on the ear Gene taxon:4577 20150622 +MaizeGDB 12733 vp5 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G410515 Seedling leaves are white. Gene taxon:4577 20150622 +MaizeGDB 12733 vp5 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G410515 kernels germinate while still on the ear Gene taxon:4577 20150622 MaizeGDB 12735 vp8 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G010353 kernels germinate while still on the ear Gene taxon:4577 20150622 MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in endosperm. Gene taxon:4577 20150622 MaizeGDB 12768 wx1 amylopectin content TO:0000097 PMID:21423772 IMP T GRMZM2G024993 Amylopectin in pollen. Gene taxon:4577 20150622 -!MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 Reduction of gene silencing Gene taxon:4577 20150619 Ethan Johnson! -!MaizeGDB 133880 mop1 PMID: 24786611 IMP GRMZM2G042443 reduction of small RNAs Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 133880 mop1 PMID:24786611 IMP GRMZM2G042443 Reduction of gene silencing Gene taxon:4577 20150619 Ethan Johnson! +!MaizeGDB 133880 mop1 PMID:24786611 IMP GRMZM2G042443 reduction of small RNAs Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 223331 les22 variegated leaf necrosis TO:0000070 PMID:21423772 IMP T GRMZM2G044074 necrotic or chlorotic lesions Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 2365883 rel2 kernel number per ear TO:0000937 PMID: 21423772 IMP T GRMZM2G042992 Ear with few kernels if any Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 25017 cr4 PMID: 21423772 IMP GRMZM2G051637 seedling which has an irregular shape Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 aleurone layer appearance TO:0000944 PMID: 21423772 IMP GRMZM2G051637 irregular-shaped patches of color and non-color in the aleurone tissue with distinct borders Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 leaf shape TO:0000492 PMID: 21423772 IMP T GRMZM2G051637 leaves crinkled Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G051637 leaves broad Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G051637 plant short Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 portion of plant tissue anatomy and morphology trait TO:0000843 PMID: 21423772 IMP T GRMZM2G051637 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25017 cr4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G051637 compact tassel Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25058 dsc1 pericarp anatomy and morphology trait TO:0000945 PMID: 21423772 IMP chr4:47715993 kernel surface opaque Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 25058 dsc1 pericarp texture TO:0002623 PMID: 21423772 IMP T chr4:47715993 surface of kernel covered with many small irregularities giving it a rough texture Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 25058 dsc1 wrinkled seed TO:0000718 PMID: 21423772 IMP T chr4:47715993 kernel surface like crumpled paper Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 2365883 rel2 kernel number per ear TO:0000937 PMID:21423772 IMP T GRMZM2G042992 Ear with few kernels if any Gene taxon:4577 20150619 Ethan Johnson +!MaizeGDB 25017 cr4 PMID:21423772 IMP GRMZM2G051637 seedling which has an irregular shape Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 aleurone layer appearance TO:0000944 PMID:21423772 IMP GRMZM2G051637 irregular-shaped patches of color and non-color in the aleurone tissue with distinct borders Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 leaf shape TO:0000492 PMID:21423772 IMP T GRMZM2G051637 leaves crinkled Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G051637 leaves broad Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G051637 plant short Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 portion of plant tissue anatomy and morphology trait TO:0000843 PMID:21423772 IMP T GRMZM2G051637 Scattered proliferations of tissue at veins on leaf, leading to a bumpy, irregular appearance. Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25017 cr4 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G051637 compact tassel Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25058 dsc1 pericarp anatomy and morphology trait TO:0000945 PMID:21423772 IMP chr4:47715993 kernel surface opaque Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 25058 dsc1 pericarp texture TO:0002623 PMID:21423772 IMP T chr4:47715993 surface of kernel covered with many small irregularities giving it a rough texture Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 25058 dsc1 wrinkled seed TO:0000718 PMID:21423772 IMP T chr4:47715993 kernel surface like crumpled paper Gene taxon:4577 20150617 Ethan Johnson !MaizeGDB 256276 dwf1 PMID:21423772 IMP GRMZM2G057000 andromonoecious Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf height TO:0000541 PMID:21423772 IMP T GRMZM2G057000 short leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf size TO:0002637 PMID:21423772 IMP T GRMZM2G057000 compact leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 256276 dwf1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G057000 broad leaves Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 25995 crp1 seedling cotyledon color TO:0000750 PMID:21423772 IMP T GRMZM2G083950 seedling leaves red fluorescence under long-wave uv Gene taxon:4577 20150616 Ethan Johnson -MaizeGDB 25995 crp1 seedling growth and development trait TO:0000949 IMP GRMZM2G083950 seedling dies after endosperm is used up Gene taxon:4577 20150616 Ethan Johnson -!MaizeGDB 274903 dcd1 PMID: 21423772 IMP GRMZM2G083459 stomata abnormal Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 274903 dcd1 mitotic cell cycle trait TO:0000730 PMID: 21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM2G083459 cork cells abnormal Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM2G083459 silica cells abnormal Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 25995 crp1 seedling growth and development trait TO:0000949 PMID:25774204 IMP GRMZM2G083950 seedling dies after endosperm is used up Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 274903 dcd1 PMID:21423772 IMP GRMZM2G083459 stomata abnormal Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 274903 dcd1 mitotic cell cycle trait TO:0000730 PMID:21423772 IMP T GRMZM2G083459 Leaf epidermis cell division asymmetric Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 cork cells abnormal Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 274903 dcd1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM2G083459 silica cells abnormal Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 30011 rld1 leaf anatomy and morphology trait TO:0000748 PMID:21423772 IMP T GRMZM2G109987 adaxial traits on the abaxial side of the leaves Gene taxon:4577 20150619 Austin Meier MaizeGDB 30011 rld1 leaf rolling TO:0000085 PMID:21423772 IMP T GRMZM2G109987 leaves are rolled Gene taxon:4577 20150619 Ethan Johnson -!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 seedling leaves stuck together Gene taxon:4577 20150622 -!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 tassels stuck together Gene taxon:4577 20150622 !! -!MaizeGDB 30023 vp10 PMID: 21423772 IMP GRMZM2G067176 top leaves stuck together Gene taxon:4577 20150622 -MaizeGDB 30023 vp10 aleurone layer color TO:0000943 PMID: 21423772 IMP T GRMZM2G067176 Aleurone layer is colored Gene taxon:4577 20150622 -MaizeGDB 30023 vp10 seedling vigor TO:0000280 PMID: 21423772 IMP T GRMZM2G067176 seedling dies after endosperm is used up Gene taxon:4577 20150622 -MaizeGDB 30023 vp10 vivipary TO:0000619 PMID: 21423772 IMP T GRMZM2G067176 kernels germinate while still on the ear Gene taxon:4577 20150622 -!MaizeGDB 308904 fea2 PMID: 23377180 IMP GRMZM2G104925 Ear tip flattened Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 308904 fea2 ear diameter TO:0000433 PMID: 23377180 IMP T GRMZM2G104925 Ear broadened Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 308904 fea2 fascicled ear TO:0000715 PMID: 23377180 IMP T GRMZM2G104925 Ear meristem overproliferation Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 308904 fea2 kernel row number per ear TO:0000687 PMID: 23377180 IMP T GRMZM2G104925 increase in the number of rows of seeds on the ear; ear floret numbers increased Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 41310 zfl2 inflorescence development trait TO:0000621 PMID: 24381105 IMP T GRMZM2G180190 defective ear Gene taxon:4577 20150622 -MaizeGDB 41310 zfl2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 24381105 IMP T GRMZM2G180190 abnormality of the tassel Gene taxon:4577 20150622 +!MaizeGDB 30023 vp10 PMID:21423772 IMP GRMZM2G067176 seedling leaves stuck together Gene taxon:4577 20150622 +!MaizeGDB 30023 vp10 PMID:21423772 IMP GRMZM2G067176 tassels stuck together Gene taxon:4577 20150622 !! +!MaizeGDB 30023 vp10 PMID:21423772 IMP GRMZM2G067176 top leaves stuck together Gene taxon:4577 20150622 +MaizeGDB 30023 vp10 aleurone layer color TO:0000943 PMID:21423772 IMP T GRMZM2G067176 Aleurone layer is colored Gene taxon:4577 20150622 +MaizeGDB 30023 vp10 seedling vigor TO:0000280 PMID:21423772 IMP T GRMZM2G067176 seedling dies after endosperm is used up Gene taxon:4577 20150622 +MaizeGDB 30023 vp10 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G067176 kernels germinate while still on the ear Gene taxon:4577 20150622 +!MaizeGDB 308904 fea2 PMID:23377180 IMP GRMZM2G104925 Ear tip flattened Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 308904 fea2 ear diameter TO:0000433 PMID:23377180 IMP T GRMZM2G104925 Ear broadened Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 308904 fea2 fascicled ear TO:0000715 PMID:23377180 IMP T GRMZM2G104925 Ear meristem overproliferation Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 308904 fea2 kernel row number per ear TO:0000687 PMID:23377180 IMP T GRMZM2G104925 increase in the number of rows of seeds on the ear; ear floret numbers increased Gene taxon:4577 20150618 Ethan Johnson +MaizeGDB 41310 zfl2 inflorescence development trait TO:0000621 PMID:24381105 IMP T GRMZM2G180190 defective ear Gene taxon:4577 20150622 +MaizeGDB 41310 zfl2 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:24381105 IMP T GRMZM2G180190 abnormality of the tassel Gene taxon:4577 20150622 !MaizeGDB 41343 bde1 PMID:21423772 IMP GRMZM2G160565 multiple silks per floret in ear Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 41343 bde1 inflorescence anatomy and morphology trait TO:0000373 PMID:21423772 IMP T GRMZM2G160565 proliferation of irregular growth on ear Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 41343 bde1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G160565 silks in the tassel Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 415181 sbe3 leaf senescence duration TO:0012012 PMID: 21508184 IMP T GRMZM2G073054 leaves senesc earleir than normal sibs Gene taxon:4577 20150619 -!MaizeGDB 60438 bif2 PMID: 21423772 IMP GRMZM2G171822 ear meristem absent Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 60438 bif2 inflorescence branching TO:0000050 PMID: 21423772 IMP T GRMZM2G171822 Inflorescence branches absent Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 415181 sbe3 leaf senescence duration TO:0012012 PMID:21508184 IMP T GRMZM2G073054 leaves senesc earleir than normal sibs Gene taxon:4577 20150619 +!MaizeGDB 60438 bif2 PMID:21423772 IMP GRMZM2G171822 ear meristem absent Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 60438 bif2 inflorescence branching TO:0000050 PMID:21423772 IMP T GRMZM2G171822 Inflorescence branches absent Gene taxon:4577 20150529 Ethan Johnson MaizeGDB 60468 dlf1 flowering time trait TO:0002616 PMID:21423772 IMP T GRMZM2G067921 mature plant 7-10 days later in flowering than normal Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 60468 dlf1 node number TO:0000634 PMID:21423772 IMP T GRMZM2G067921 4-6 more nodes and leaves than normal. Gene taxon:4577 20150617 Ethan Johnson MaizeGDB 60468 dlf1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G321753 mature plant 2-3 feet taller than normal. Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 60513 rth1 root hair length TO:0002665 PMID: 21423772 IMP T GRMZM2G099056 root hairs fail to elongate Gene taxon:4577 20150619 Austin Meier -MaizeGDB 60513 rth1 root shape TO:0002710 PMID: 21423772 IMP T GRMZM2G099056 general term to describe abnormality in root system Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID: 21423772 IMP T GRMZM2G377215 root hair decreased length Gene taxon:4577 20150619 Austin Meier -MaizeGDB 60515 rth3 root hair length TO:0002665 PMID: 21423772 IMP T GRMZM2G377215 root hairs fail to elongate Gene taxon:4577 20150619 Austin Meier -MaizeGDB 60537 tsh1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID: 21423772 IMP T GRMZM2G325850 abnormality of the tassel Gene taxon:4577 20150622 -!MaizeGDB 61077 ns1 PMID: 21423772 IMP GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 61077 ns1 internode length TO:0000145 PMID: 21423772 IMP T GRMZM2G069028 internode elongation reduced Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 61077 ns1 leaf width TO:0000370 PMID: 21423772 IMP T GRMZM2G069028 leaves are very narrow along their whole length Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 61077 ns1 plant height TO:0000207 PMID: 21423772 IMP T GRMZM2G069028 Plants are reduced in height Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID: 21423772 IMP T GRMZM2G069028 The margin domain of both blade and sheath is missing Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 60513 rth1 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G099056 root hairs fail to elongate Gene taxon:4577 20150619 Austin Meier +MaizeGDB 60513 rth1 root shape TO:0002710 PMID:21423772 IMP T GRMZM2G099056 general term to describe abnormality in root system Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hair decreased length Gene taxon:4577 20150619 Austin Meier +MaizeGDB 60515 rth3 root hair length TO:0002665 PMID:21423772 IMP T GRMZM2G377215 root hairs fail to elongate Gene taxon:4577 20150619 Austin Meier +MaizeGDB 60537 tsh1 tassel inflorescence anatomy and morphology trait TO:0000788 PMID:21423772 IMP T GRMZM2G325850 abnormality of the tassel Gene taxon:4577 20150622 +!MaizeGDB 61077 ns1 PMID:21423772 IMP GRMZM2G069028 Plants (stems) do not elongate in response to gibberellins. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 61077 ns1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G069028 internode elongation reduced Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 61077 ns1 leaf width TO:0000370 PMID:21423772 IMP T GRMZM2G069028 leaves are very narrow along their whole length Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 61077 ns1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G069028 Plants are reduced in height Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID:21423772 IMP T GRMZM2G069028 The margin domain of both blade and sheath is missing Gene taxon:4577 20150619 Ethan Johnson !MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 multiple silks per floret in ear Gene taxon:4577 20150619 !MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 seeds in tassel Gene taxon:4577 20150619 !MaizeGDB 61653 si1 PMID:21423772 IMP GRMZM2G139073 silks in tassel Gene taxon:4577 20150619 @@ -320,22 +320,22 @@ MaizeGDB 61077 ns1 vascular leaf anatomy and morphology trait TO:0000419 PMID: 2 !MaizeGDB 64424 gn1 PMID:21423772 IMP GRMZM2G452178 silks in the tassel Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 64424 gn1 internode length TO:0000145 PMID:21423772 IMP T GRMZM2G452178 internode elongation reduced Gene taxon:4577 20150618 Ethan Johnson MaizeGDB 64424 gn1 plant height TO:0000207 PMID:21423772 IMP T GRMZM2G452178 The plant is shorter Gene taxon:4577 20150618 Ethan Johnson -MaizeGDB 854977 brk1 plant cell anatomy and morphology trait TO:0002683 PMID: 21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell lobes blocked Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape abnormal Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape rectangular Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID: 21423772 IMP T GRMZM5G842058 Stomatal subsidiary cells are abnormal Gene taxon:4577 20150529 Ethan Johnson -MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID: 25713378 IMP T GRMZM2G027522 More archesporial cells in developing anthers Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID: 25713378 IMP T GRMZM2G027522 More archesporial cells in developing ovules. Gene taxon:4577 20150619 Ethan Johnson -MaizeGDB 86035 mac1 sterility related trait TO:0000485 PMID: 25713378 IMP T GRMZM2G027522 Male and female sterile. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 854977 brk1 plant cell anatomy and morphology trait TO:0002683 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell lobes blocked Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape abnormal Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Leaf blade epidermal cell shape rectangular Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 854977 brk1 plant cell shape TO:0002682 PMID:21423772 IMP T GRMZM5G842058 Stomatal subsidiary cells are abnormal Gene taxon:4577 20150529 Ethan Johnson +MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing anthers Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 86035 mac1 cell growth and development trait TO:0002686 PMID:25713378 IMP T GRMZM2G027522 More archesporial cells in developing ovules. Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 86035 mac1 sterility related trait TO:0000485 PMID:25713378 IMP T GRMZM2G027522 Male and female sterile. Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 870601 sgo1 anther shape TO:0000214 PMID:21423772 IMP T GRMZM2G074082 Anthers shriveled Gene taxon:4577 20150619 Austin Meier MaizeGDB 870601 sgo1 male sterility TO:0000437 PMID:21423772 IMP T GRMZM2G074082 Male sterile Gene taxon:4577 20150619 Austin Meier MaizeGDB 870601 sgo1 pollen abortion type TO:0000218 PMID:21423772 IMP T GRMZM2G074082 Pollen absent or aborted. Gene taxon:4577 20150619 Austin Meier -MaizeGDB 871231 pac1 endosperm color TO:0000487 PMID: 21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone Gene taxon:4577 20150619 Ethan Johnson +MaizeGDB 871231 pac1 endosperm color TO:0000487 PMID:21423772 IMP T GRMZM2G058292 Reduced pigmentation in aleurone Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 886495 sal1 aleurone layer anatomy and morphology trait TO:0000942 PMID:21423772 IMP GRMZM2G117935 multiple cell layers in the aleurone tissue Gene taxon:4577 20150622 -!MaizeGDB 9017732 cf1 IMP GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. Gene taxon:4577 20150616 Ethan Johnson +!MaizeGDB 9017732 cf1 PMID:25774204 IMP GRMZM2G026117 Leaves develop irregular nonclonal, yellow_green sectors, which leads to an appearance similar to military camouflage. Sectors can turn necrotic. Gene taxon:4577 20150616 Ethan Johnson MaizeGDB 9018083 vp15 vivipary TO:0000619 PMID:21423772 IMP T GRMZM2G121468 kernels germinate while still on the ear Gene taxon:4577 20150622 -MaizeGDB 9019783 caf2 leaf color TO:0000326 PMID: 25725436 IMP T AC199526.5_FG003 Seedling leaves are white. Gene taxon:4577 20150617 Ethan Johnson -MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID: 21423772 IMP T GRMZM2G035820 Seedling leaves are white. Gene taxon:4577 20150619 Austin Meier +MaizeGDB 9019783 caf2 leaf color TO:0000326 PMID:25725436 IMP T AC199526.5_FG003 Seedling leaves are white. Gene taxon:4577 20150617 Ethan Johnson +MaizeGDB 941309 rnc1 leaf color TO:0000326 PMID:21423772 IMP T GRMZM2G035820 Seedling leaves are white. Gene taxon:4577 20150619 Austin Meier !MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 ligule on outside of leaf at base of auricle Gene taxon:4577 20150619 Ethan Johnson !MaizeGDB 969623 mwp1 PMID:21423772 IMP GRMZM2G082264 sometimes upper leaves may be crinkly (cr) or wab-like (wavy auricle in blade-like) Gene taxon:4577 20150619 Ethan Johnson MaizeGDB 969623 mwp1 leaf sheath auricle pubescence TO:0002716 PMID:21423772 IMP T GRMZM2G082264 may have hairy sheaths Gene taxon:4577 20150619 Ethan Johnson -- 2.34.1