From af28aadbf2b8ce2a8a6864aad3b46f99c5d962d1 Mon Sep 17 00:00:00 2001
From: elserj <elserj@localhost>
Date: Mon, 28 Dec 2015 23:02:45 +0000
Subject: [PATCH] Added taxon lookup table

svn path=/; revision=642
---
 interactome_scripts/find_species.pl | 128 ++++++++++++++++++++++++++++
 1 file changed, 128 insertions(+)

diff --git a/interactome_scripts/find_species.pl b/interactome_scripts/find_species.pl
index 47ea499..7390c7e 100755
--- a/interactome_scripts/find_species.pl
+++ b/interactome_scripts/find_species.pl
@@ -1060,4 +1060,132 @@ sub retrieval_info {
 	return ($method, $date);
 }
 
+sub find_taxon {
+	my $species = $_[0];
+	my %taxon_hash = (
+		'Aegilops_tauschii', '37682',
+		'Amborella_trichopoda', '13333',
+		'Arabidopsis_lyrata' , '59689',
+		'Arabidopsis_thaliana', '3702',
+		'Arachis_duranensis', '130453',
+		'Arachis_ipaensis', '130454',
+		'Batrachochytrium_dendrobatidis', '109871',
+		'Brachypodium_distachyon', '15368',
+		'Brachypodium_sylvaticum.Corv', '29664',
+		'Brachypodium_sylvaticum.Greece', '29664',
+		'Brachypodium_sylvaticum.Spain', '29664',
+		'Brassica_oleracea', '3712',
+		'Brassica_rapa' ,'3711',
+		'Caenorhabditis_elegans', '6239',
+		'Cajanus_cajan', '3821',
+		'Cannabis_sativa.Purple.Kush', '3483',
+		'Capsella_rubella', '81985',
+		'Capsicum_annuum', '4072',
+		'Carica_papaya', '3649',
+		'Chlamydomonas_reinhardtii', '3055',
+		'Cicer_arietinum', '3827',
+		'Citrullus_lanatus', '3654',
+		'Citrus_clementina', '85681',
+		'Citrus_sinensis', '2711',
+		'Coffea_canephora', '49390',
+		'Cucumis_sativus', '3659',
+		'Danio_rerio', '7955',
+		'Drosophila_melanogaster', '7227',
+		'Ectocarpus_siliculosus', '2880',
+		'Elaphocordyceps_capitata', '45325',
+		'Elaphocordyceps_ophioglossoides', '71617',
+		'Elaphocordyceps_paradoxa', '94208',
+		'Epichloe_festucae', '35717',
+		'Escherichia_coli', '562',
+		'Eucalyptus_grandis', '71139',
+		'Fragaria_vesca', '57918',
+		'Fusarium_graminearum', '5518',
+		'Fusarium_oxysporum.4287', '660037',
+		'Fusarium_verticillioides', '117187',
+		'Gadus_morhua', '8049',
+		'Gasterosteus_aculeatus', '69293',
+		'Glycine_max', '3847',
+		'Gossypium_raimondii', '29730',
+		'Homo_sapiens', '9606',
+		'Hordeum_vulgare', '4513',
+		'Jatropha_curcas', '180498',
+		'Kalanchoe_laxiflora', '1670617',
+		'Laccaria_bicolor', '29883',
+		'Leersia_perrieri', '77586',
+		'Linum_usitatissimum', '4006',
+		'Magnaporthe_grissa', '148305',
+		'Malus_domestica', '3750',
+		'Manihot_esculenta', '3983',
+		'Medicago_truncatula', '3880',
+		'Mimulus_guttatus', '4155',
+		'Mus_musculus', '10090',
+		'Musa_acuminata', '4641',
+		'Nectria_haematococca', '140110',
+		'Nelumbo_nucifera', '4432',
+		'Neurospora_crassa', '5141',
+		'Nostoc_punctiforme', '272131',
+		'Oncorhynchus_mykiss', '8022',
+		'Oryza_australiensis', '4532',
+		'Oryza_barthii', '65489',
+		'Oryza_brachyantha', '4533',
+		'Oryza_glaberrima', '4538',
+		'Oryza_glumaepatula', '40148',
+		'Oryza_granulata', '110450',
+		'Oryza_kasalath', '4527',
+		'Oryza_longistaminata', '4528',
+		'Oryza_meridionalis', '40149',
+		'Oryza_minuta', '63629',
+		'Oryza_nivara', '4536',
+		'Oryza_officinalis', '4535',
+		'Oryza_punctata', '4537',
+		'Oryza_rufipogon', '4529',
+		'Oryza_sativa.indica.gramene', '39946',
+		'Oryza_sativa.indica.iplant', '39946',
+		'Oryza_sativa.indica.IR29', '39946',
+		'Oryza_sativa.indica.pokkali', '39946',
+		'Oryza_sativa.japonica.iplant', '39947',
+		'Oryza_sativa.japonica.IRGSP', '39947',
+		'Oryza_sativa.japonica.MSU', '39947',
+		'Oryzias_latipes', '8090',
+		'Pediculus_humanus', '121225',
+		'Phaseolus_vulgaris', '3885',
+		'Phoenix_dactylifera', '42345',
+		'Phyllostachys_heterocycla', '38705',
+		'Physcomitrella_patens', '3218',
+		'Phytophthora_infestans', '4787',
+		'Picea_abies', '3329',
+		'Pinus_taeda', '3352',
+		'Populus_trichocarpa', '3694',
+		'Populus_trichocarpa.ver3', '3694',
+		'Prunus_persica', '3760',
+		'Rattus_norvegicus', '10116',
+		'Rhizopus_oryzae', '64495',
+		'Ricinus_communis', '3988',
+		'Saccharomyces_cerevisiae', '4932',
+		'Salvia_hispancia.salba', '49212',
+		'Salvia_splendens', '180675',
+		'Schizosaccharomyces_pombe', '4896',
+		'Selaginella_moellendorffii', '88036',
+		'Setaria_italica', '4555',
+		'Solanum_lycopersicum', '4081',
+		'Solanum_tuberosum', '4113',
+		'Sorghum_bicolor', '4558',
+		'Synechocystis_pcc6803', '1148',
+		'Takifugu_rubripes', '31033',
+		'Tetraodon_nigroviridis', '99883',
+		'Theobroma_cacao', '3641',
+		'Tolypocladium_inflatum', '29910',
+		'Trichodesmium_erythraeum', '1206',
+		'Triticum_aestivum', '4565',
+		'Triticum_monococcum.DV92', '4568',
+		'Triticum_monococcum.G3116', '4568',
+		'Triticum_turgidum', '4571',
+		'Triticum_urartu', '4572',
+		'Vitis_vinifera', '29760',
+		'Zea_mays', '4577',
+		);
+	my $taxon = $taxon_hash{$species};
+	return $taxon;
+}	
+
 1;
-- 
2.34.1