From baea66bd13566ba836e8bb8315ec2935456741fd Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Thu, 18 Sep 2025 15:22:41 -0700 Subject: [PATCH] Moving annotations, cleaning up synonyms --- .../peco_gene_Oryza_Gramene.assoc | 65 +++++++------------ 1 file changed, 24 insertions(+), 41 deletions(-) diff --git a/peco-associations/peco_gene_Oryza_Gramene.assoc b/peco-associations/peco_gene_Oryza_Gramene.assoc index 6827566..aef0f9f 100644 --- a/peco-associations/peco_gene_Oryza_Gramene.assoc +++ b/peco-associations/peco_gene_Oryza_Gramene.assoc @@ -1,23 +1,23 @@ !gaf-version: 2.0 !DB DB_Object_ID DB_Object_Symbol Qualifier PECOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by GR_gene GR:0060860 SE1 PECO:0007403 GR_REF:2258 IMP E PHOTOSENSITIVITY 1 Fl|Lm|Hd1|Se1|K|Photoperiod-sensitivity-1|Rs|Lf|Fl1|Flowering date-1|Fl1|Flowering date-1|LOC_Os06g16370 gene taxon:4530 20121108 Gramene -GR_gene GR:0060864 SE5 PECO:0007048 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene -GR_gene GR:0060864 SE5 PECO:0007226 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene -GR_gene GR:0060864 SE5 PECO:0007266 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene -GR_gene GR:0060864 SE5 PECO:0007318 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene -GR_gene GR:0060864 SE5 PECO:0007403 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene -GR_gene GR:0060842 SD1 PECO:0007226 GR_REF:6269 IMP E SEMIDWARF 1 dee-geo-woo-gen dwarf|d49|d47|green revolution gene|sd1|semidwarf-1|sd1|semidwarf-1|LOC_Os01g66100 gene taxon:4530 20121108 Gramene -GR_gene GR:0060842 SD1 PECO:0007255 GR_REF:6269 IMP E SEMIDWARF 1 dee-geo-woo-gen dwarf|d49|d47|green revolution gene|sd1|semidwarf-1|sd1|semidwarf-1|LOC_Os01g66100 gene taxon:4530 20121108 Gramene +GR_gene GR:0060864 SE5 PECO:0007048 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene +GR_gene GR:0060864 SE5 PECO:0007226 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene +GR_gene GR:0060864 SE5 PECO:0007266 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene +GR_gene GR:0060864 SE5 PECO:0007318 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene +GR_gene GR:0060864 SE5 PECO:0007403 GR_REF:5164 IMP E PHOTOSENSITIVITY 5 Photoperiod-sensitivity-5|Se5|Fl8|Flowering date-8|LOC_Os06g40080 gene taxon:4530 20121108 Gramene +GR_gene GR:0060842 SD1 PECO:0007226 GR_REF:6269 IMP E SEMIDWARF 1 dee-geo-woo-gen dwarf|d49|d47|green revolution gene|sd1|semidwarf-1|LOC_Os01g66100 gene taxon:4530 20121108 Gramene +GR_gene GR:0060842 SD1 PECO:0007255 GR_REF:6269 IMP E SEMIDWARF 1 dee-geo-woo-gen dwarf|d49|d47|green revolution gene|sd1|semidwarf-1|LOC_Os01g66100 gene taxon:4530 20121108 Gramene GR_gene GR:0060184 d1 PECO:0007403 GR_REF:6145 IMP E dwarf-1 dwf1|daikoku dwarf|G-protein alpha subunit|GA1|GP-alpha-1|Guanine nucleotide-binding protein alpha-1 subunit|RGA1|LOC_Os05g26890 gene taxon:4530 20121108 Gramene -GR_gene GR:0060186 D3 PECO:0007226 GR_REF:6242 IMP E DWARF BUNKETSUWAITO TILLERING bungetsuwaito tillering dwarf|dwf3|d3|dwarf-3|d3|dwarf-3|LOC_Os06g06050 gene taxon:4530 20121108 Gramene -GR_gene GR:0060186 D3 PECO:0007403 GR_REF:6242 IMP E DWARF BUNKETSUWAITO TILLERING bungetsuwaito tillering dwarf|dwf3|d3|dwarf-3|d3|dwarf-3|LOC_Os06g06050 gene taxon:4530 20121108 Gramene -GR_gene GR:0060627 PITA PECO:0007266 GR_REF:6331 IMP E PYRICULARIA ORYZAE RESISTANCE TA Pita2|Pi4a|RMg16|Pita|Magnaporthe grisea resistance-ta|Pita|Magnaporthe grisea resistance-ta|LOC_Os12g18360 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007048 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007174 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007226 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007266 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007270 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene -GR_gene GR:0060444 HD6 PECO:0007403 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060186 D3 PECO:0007226 GR_REF:6242 IMP E DWARF BUNKETSUWAITO TILLERING bungetsuwaito tillering dwarf|dwf3|d3|dwarf-3|LOC_Os06g06050 gene taxon:4530 20121108 Gramene +GR_gene GR:0060186 D3 PECO:0007403 GR_REF:6242 IMP E DWARF BUNKETSUWAITO TILLERING bungetsuwaito tillering dwarf|dwf3|d3|dwarf-3|LOC_Os06g06050 gene taxon:4530 20121108 Gramene +GR_gene GR:0060627 PITA PECO:0007266 GR_REF:6331 IMP E PYRICULARIA ORYZAE RESISTANCE TA Pita2|Pi4a|RMg16|Pita|Magnaporthe grisea resistance-ta|LOC_Os12g18360 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007048 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007174 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007226 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007266 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007270 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene +GR_gene GR:0060444 HD6 PECO:0007403 GR_REF:6371 IMP E Heading date 6 Heading date-6|Hd6(t)*|Fl34|Flowering date-34|LOC_Os07g02350 gene taxon:4530 20121108 Gramene GR_gene GR:0060068 BC1 PECO:0007048 GR_REF:5654 IMP E BRITTLE CULM 1 bc1|brittle culm-1|bc1|brittle culm-1|LOC_Os03g30250 gene taxon:4530 20121108 Gramene GR_gene GR:0060068 BC1 PECO:0007403 GR_REF:5654 IMP E BRITTLE CULM 1 bc1|brittle culm-1|bc1|brittle culm-1|LOC_Os03g30250 gene taxon:4530 20121108 Gramene GR_gene GR:0060193 D11 PECO:0007266 GR_REF:5792 IMP E DWARF SHINKANEAIKOKU OR NOHRIN 28 shinkaneaikoku or nohrin 28 dwarf|dwf10|d8|D11/CYP724B1|OsDWARF11|d11|dwarf-11|d11|dwarf-11|LOC_Os04g39430 gene taxon:4530 20121108 Gramene @@ -401,34 +401,19 @@ GR_gene GR:0020056 rr2 PECO:0007383 GR_REF:11087 IMP E Type A response regulat GR_gene GR:0020056 rr2 PECO:0007403 GR_REF:11087 IMP E Type A response regulator 2 Osrr2|LOC_Os02g35180 gene taxon:4530 20121108 Gramene GR_gene GR:0020056 rr2 PECO:0007404 GR_REF:11087 IMP E Type A response regulator 2 Osrr2|LOC_Os02g35180 gene taxon:4530 20121108 Gramene GR_gene GR:0020055 rr1 PECO:0007403 GR_REF:11087 IMP E Type A response regulator 1 OsRR1|LOC_Os04g36070 gene taxon:4530 20121108 Gramene -GR_gene GR:0020064 CPS1 PECO:0007255 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 1 Putative kaurene synthase A|OsCPS1|P0444A09.11|LOC_Os02g17780 gene taxon:4530 20121108 Gramene -GR_gene GR:0020064 CPS1 PECO:0007403 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 1 Putative kaurene synthase A|OsCPS1|P0444A09.11|LOC_Os02g17780 gene taxon:4530 20121108 Gramene -GR_gene GR:0020066 CPS4 PECO:0007226 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 4 Putative kaurene synthase A|OsCPSL3|OsCPS4|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|LOC_Os04g09900 gene taxon:4530 20121108 Gramene -GR_gene GR:0020066 CPS4 PECO:0007255 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 4 Putative kaurene synthase A|OsCPSL3|OsCPS4|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|LOC_Os04g09900 gene taxon:4530 20121108 Gramene -GR_gene GR:0020066 CPS4 PECO:0007403 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 4 Putative kaurene synthase A|OsCPSL3|OsCPS4|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|LOC_Os04g09900 gene taxon:4530 20121108 Gramene +GR_gene GR:0020066 CPS4 PECO:0007248 DOI:10.1104/pp.103.033696 IMP E ent-copalyl diphosphate synthase 4 Putative kaurene synthase A|OsCPSL3|OsCPS4|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|LOC_Os04g09900 gene taxon:4530 20121108 Gramene +GR_gene GR:0020066 CPS4 PECO:0007256 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 4 Putative kaurene synthase A|OsCPSL3|OsCPS4|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|cpsl3|ent-copalyl diphosphate synthase like 3|syn-copalyl diphosphate synthase|OsCYC1|LOC_Os04g09900 gene taxon:4530 20121108 Gramene GR_gene GR:0020065 CPS2 PECO:0007105 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 2 Putative kaurene synthase A|OsCPSL1|OsCPS2|P0689H05.16|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|LOC_Os02g36210 gene taxon:4530 20121108 Gramene GR_gene GR:0020065 CPS2 PECO:0007226 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 2 Putative kaurene synthase A|OsCPSL1|OsCPS2|P0689H05.16|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|LOC_Os02g36210 gene taxon:4530 20121108 Gramene -GR_gene GR:0020065 CPS2 PECO:0007255 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 2 Putative kaurene synthase A|OsCPSL1|OsCPS2|P0689H05.16|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|LOC_Os02g36210 gene taxon:4530 20121108 Gramene -GR_gene GR:0020065 CPS2 PECO:0007403 GR_REF:11073 IMP E ent-copalyl diphosphate synthase 2 Putative kaurene synthase A|OsCPSL1|OsCPS2|P0689H05.16|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|cpsl1|ent-copalyl diphosphate synthase like 1|OsCYC2|LOC_Os02g36210 gene taxon:4530 20121108 Gramene GR_gene GR:0020067 KS1 PECO:0007226 GR_REF:11073 IMP E Ent-kaurene synthase 1 OsKS1|KSL1|OsKSL1|KSL1|OsKSL1|LOC_Os04g52230 gene taxon:4530 20121108 Gramene -GR_gene GR:0020067 KS1 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 1 OsKS1|KSL1|OsKSL1|KSL1|OsKSL1|LOC_Os04g52230 gene taxon:4530 20121108 Gramene GR_gene GR:0020067 KS1 PECO:0007383 GR_REF:11073 IMP E Ent-kaurene synthase 1 OsKS1|KSL1|OsKSL1|KSL1|OsKSL1|LOC_Os04g52230 gene taxon:4530 20121108 Gramene GR_gene GR:0020067 KS1 PECO:0007403 GR_REF:11073 IMP E Ent-kaurene synthase 1 OsKS1|KSL1|OsKSL1|KSL1|OsKSL1|LOC_Os04g52230 gene taxon:4530 20121108 Gramene -GR_gene GR:0020068 KS2 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 2 OsKS2|Ent-kaurene synthase like-2|KSL2|OsKSL2|Ent-kaurene synthase like-2|KSL2|OsKSL2|LOC_Os04g52240 gene taxon:4530 20121108 Gramene GR_gene GR:0020069 KS3 PECO:0007403 GR_REF:11073 IMP E Ent-kaurene synthase 3 OsKS3|kaurene synthase like-3|LOC_Os04g52210|KSL3|OsKSL3|KSL3|OsKSL3|LOC_Os04g52210 gene taxon:4530 20121108 Gramene -GR_gene GR:0020070 KS4 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 4 Ent-kaurene synthase 4|Ent-kaurene synthase like-4|OsDTS2|syn-pimara-7 15-diene synthase|KSL4|OsKSL4|syn Pimaradiene synthase|OsDTS2|syn-pimara-7 15-diene synthase|KSL4|OsKSL4|syn Pimaradiene synthase|LOC_Os04g10060 gene taxon:4530 20121108 Gramene GR_gene GR:0020070 KS4 PECO:0007383 GR_REF:11073 IMP E Ent-kaurene synthase 4 Ent-kaurene synthase 4|Ent-kaurene synthase like-4|OsDTS2|syn-pimara-7 15-diene synthase|KSL4|OsKSL4|syn Pimaradiene synthase|OsDTS2|syn-pimara-7 15-diene synthase|KSL4|OsKSL4|syn Pimaradiene synthase|LOC_Os04g10060 gene taxon:4530 20121108 Gramene -GR_gene GR:0020071 KS5 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 5 OsKS5|KSL5|OsKSL5|KSL5i|OsKSL5i|KSL5j|OsKSL5j|ent-isokaurene synthase|ent-pimara-8(14) 15-diene synthase|KSL5|OsKSL5|KSL5i|OsKSL5i|KSL5j|OsKSL5j|ent-isokaurene synthase|ent-pimara-8(14) 15-diene synthase|LOC_Os02g36220 gene taxon:4530 20121108 Gramene -GR_gene GR:0020071 KS5 PECO:0007403 GR_REF:11073 IMP E Ent-kaurene synthase 5 OsKS5|KSL5|OsKSL5|KSL5i|OsKSL5i|KSL5j|OsKSL5j|ent-isokaurene synthase|ent-pimara-8(14) 15-diene synthase|KSL5|OsKSL5|KSL5i|OsKSL5i|KSL5j|OsKSL5j|ent-isokaurene synthase|ent-pimara-8(14) 15-diene synthase|LOC_Os02g36220 gene taxon:4530 20121108 Gramene GR_gene GR:0020072 KS6 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 6 OsKS6|KSL6|OsKSL6|ent-isokaurene synthase|KSL6|OsKSL6|ent-isokaurene synthase|LOC_Os02g36264 gene taxon:4530 20121108 Gramene -GR_gene GR:0020072 KS6 PECO:0007403 GR_REF:11073 IMP E Ent-kaurene synthase 6 OsKS6|KSL6|OsKSL6|ent-isokaurene synthase|KSL6|OsKSL6|ent-isokaurene synthase|LOC_Os02g36264 gene taxon:4530 20121108 Gramene GR_gene GR:0020073 KS7 PECO:0007174 GR_REF:11073 IMP E Ent-kaurene synthase 7 OsKS7|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|LOC_Os02g36140 gene taxon:4530 20121108 Gramene GR_gene GR:0020073 KS7 PECO:0007226 GR_REF:11073 IMP E Ent-kaurene synthase 7 OsKS7|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|LOC_Os02g36140 gene taxon:4530 20121108 Gramene -GR_gene GR:0020073 KS7 PECO:0007255 GR_REF:11073 IMP E Ent-kaurene synthase 7 OsKS7|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|LOC_Os02g36140 gene taxon:4530 20121108 Gramene -GR_gene GR:0020073 KS7 PECO:0007403 GR_REF:11073 IMP E Ent-kaurene synthase 7 OsKS7|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|OsDTC1|DTC1|ent-cassa-12 15-diene synthase|KSL7|OsKSL7|ent-Cassadiene|ent-Cassadiene synthase|LOC_Os02g36140 gene taxon:4530 20121108 Gramene GR_gene GR:0020074 kao PECO:0007226 GR_REF:11073 IMP E ent-kaurenoic acid oxidase OSJNBa0004I20.18|OsKAO|P0514G12.42|Putative cytochrome P450 DWARF3|LOC_Os06g02019 gene taxon:4530 20121108 Gramene -GR_gene GR:0020074 kao PECO:0007255 GR_REF:11073 IMP E ent-kaurenoic acid oxidase OSJNBa0004I20.18|OsKAO|P0514G12.42|Putative cytochrome P450 DWARF3|LOC_Os06g02019 gene taxon:4530 20121108 Gramene -GR_gene GR:0020074 kao PECO:0007403 GR_REF:11073 IMP E ent-kaurenoic acid oxidase OSJNBa0004I20.18|OsKAO|P0514G12.42|Putative cytochrome P450 DWARF3|LOC_Os06g02019 gene taxon:4530 20121108 Gramene GR_gene GR:0020077 ga2ox-1 PECO:0007248 GR_REF:11073 IMP E Gibberellin 2-oxidase 1 OSJNBa0017J22.4|OsGA2ox-1|ga2ox|ga2ox 1|LOC_Os05g06670 gene taxon:4530 20121108 Gramene GR_gene GR:0100254 rps11 PECO:0007270 GR_REF:1434 IMP E 30S ribosomal protein S11 LOC_Osp1g00670 gene taxon:4530 20121108 Gramene GR_gene GR:0100254 rps11 PECO:0007403 GR_REF:1434 IMP E 30S ribosomal protein S11 LOC_Osp1g00670 gene taxon:4530 20121108 Gramene @@ -961,10 +946,8 @@ GR_gene GR:0020298 bhlh160 PECO:0007199 GR_REF:11280 IMP E basic/helix-loop-he GR_gene GR:0020298 bhlh160 PECO:0007200 GR_REF:11280 IMP E basic/helix-loop-helix 160 basic helix loop helix 160|OsbHLH160|LOC_Os11g02054 gene taxon:4530 20121108 Gramene GR_gene GR:0020298 bhlh160 PECO:0007383 GR_REF:11280 IMP E basic/helix-loop-helix 160 basic helix loop helix 160|OsbHLH160|LOC_Os11g02054 gene taxon:4530 20121108 Gramene GR_gene GR:0020298 bhlh160 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 160 basic helix loop helix 160|OsbHLH160|LOC_Os11g02054 gene taxon:4530 20121108 Gramene -GR_gene GR:0080026 RAD PECO:0007248 GR_REF:9503 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene -GR_gene GR:0080026 RAD PECO:0007255 GR_REF:9503 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene -GR_gene GR:0080026 RAD PECO:0007383 GR_REF:9503 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene -GR_gene GR:0080026 RAD PECO:0007403 GR_REF:9503 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene +GR_gene GR:0080026 RAD PECO:0007248 DOI:10.1093/pcp/pci090 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene|PECO:cooperl +GR_gene GR:0080026 RAD PECO:0007383 DOI:10.1093/pcp/pci090 IMP E RAD OsRAD|OsGEN-L|OsGEN-like|LOC_Os09g35000 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0020301 bhlh163 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 163 basic helix loop helix 163|OsbHLH163|Hypothetical protein OJ1167_G06.116|LOC_Os07g47960 gene taxon:4530 20121108 Gramene GR_gene GR:0080027 HTD1 PECO:0007074 GR_REF:11422 IMP E High-Tillering Dwarf1 OsCCD7|LOC_Os04g46470 gene taxon:4530 20121108 Gramene GR_gene GR:0080027 HTD1 PECO:0007200 GR_REF:11422 IMP E High-Tillering Dwarf1 OsCCD7|LOC_Os04g46470 gene taxon:4530 20121108 Gramene @@ -972,10 +955,10 @@ GR_gene GR:0080027 HTD1 PECO:0007248 GR_REF:11422 IMP E High-Tillering Dwarf1 GR_gene GR:0080027 HTD1 PECO:0007266 GR_REF:11422 IMP E High-Tillering Dwarf1 OsCCD7|LOC_Os04g46470 gene taxon:4530 20121108 Gramene GR_gene GR:0080027 HTD1 PECO:0007403 GR_REF:11422 IMP E High-Tillering Dwarf1 OsCCD7|LOC_Os04g46470 gene taxon:4530 20121108 Gramene GR_gene GR:0020303 bhlh166 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 166 basic helix loop helix 166|OsbHLH166|LOC_Os03g21970 gene taxon:4530 20121108 Gramene -GR_gene GR:0080028 REH1 PECO:0007226 GR_REF:11474 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene -GR_gene GR:0080028 REH1 PECO:0007248 GR_REF:11474 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene -GR_gene GR:0080028 REH1 PECO:0007255 GR_REF:11474 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene -GR_gene GR:0080028 REH1 PECO:0007403 GR_REF:11474 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene +GR_gene GR:0080028 REH1 PECO:0007067 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl +GR_gene GR:0080028 REH1 PECO:0007248 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl +GR_gene GR:0080028 REH1 PECO:0007067 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl +GR_gene GR:0080028 REH1 PECO:0007204 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0101188 flo4 PECO:0007105 GR_REF:11107 IMP E floury endosperm 4 PPDKB|OsPPDKB|pyruvate orthophosphate dikinase|pyruvate orthophosphate dikinase B|cytosolic pyruvate orthophosphate dikinase|cyOsPPDKB|orthophosphate dikinase|Pyruvate phosphate dikinase|LOC_Os05g33570 gene taxon:4530 20121108 Gramene GR_gene GR:0101188 flo4 PECO:0007199 GR_REF:11107 IMP E floury endosperm 4 PPDKB|OsPPDKB|pyruvate orthophosphate dikinase|pyruvate orthophosphate dikinase B|cytosolic pyruvate orthophosphate dikinase|cyOsPPDKB|orthophosphate dikinase|Pyruvate phosphate dikinase|LOC_Os05g33570 gene taxon:4530 20121108 Gramene GR_gene GR:0101188 flo4 PECO:0007200 GR_REF:11107 IMP E floury endosperm 4 PPDKB|OsPPDKB|pyruvate orthophosphate dikinase|pyruvate orthophosphate dikinase B|cytosolic pyruvate orthophosphate dikinase|cyOsPPDKB|orthophosphate dikinase|Pyruvate phosphate dikinase|LOC_Os05g33570 gene taxon:4530 20121108 Gramene -- 2.34.1