From c41d9adad004a1b80e911dd3a84f7a7f4ec9b158 Mon Sep 17 00:00:00 2001
From: rajar <rajar@localhost>
Date: Wed, 2 Nov 2011 21:39:40 +0000
Subject: [PATCH] COMMAND TO RUN PREDOTAR

svn path=/; revision=208
---
 interpro/RUN_PREDOTAR.txt | 5 +++++
 interpro/RUN_TMHMM.pl     | 2 +-
 2 files changed, 6 insertions(+), 1 deletion(-)
 create mode 100644 interpro/RUN_PREDOTAR.txt

diff --git a/interpro/RUN_PREDOTAR.txt b/interpro/RUN_PREDOTAR.txt
new file mode 100644
index 0000000..7552b7b
--- /dev/null
+++ b/interpro/RUN_PREDOTAR.txt
@@ -0,0 +1,5 @@
+#RUN THIS COMMAND AT THE COMMAND LINE.
+#REPLACE species with the speciesname
+
+Prompt>java -jar predotar.jar p /lemma/Rajani/iprscan/species.seq > species_predotar.txt
+
diff --git a/interpro/RUN_TMHMM.pl b/interpro/RUN_TMHMM.pl
index 465999b..fa9212e 100644
--- a/interpro/RUN_TMHMM.pl
+++ b/interpro/RUN_TMHMM.pl
@@ -58,7 +58,7 @@ open(in_file,$file);
                 print FILE1 "$key\n";
                 print FILE1 "$value";
 
-                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species.seq >> species_tmhmmdata.txt");
+                $status = system("/lemma/SignalP/TMHMM2.0c/bin/tmhmm  tmhmm species.seq >> species_tmhmm.txt");
 
 
             }
-- 
2.34.1