From e279ddfaf7c082948c234736d4b3736aacfd5ec3 Mon Sep 17 00:00:00 2001 From: elserj Date: Wed, 19 Feb 2020 21:02:53 +0000 Subject: [PATCH] Missed bracket svn path=/; revision=669 --- interactome_scripts/association_file_from_orthologs_simple.pl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/interactome_scripts/association_file_from_orthologs_simple.pl b/interactome_scripts/association_file_from_orthologs_simple.pl index 16e7dca..280cbbd 100755 --- a/interactome_scripts/association_file_from_orthologs_simple.pl +++ b/interactome_scripts/association_file_from_orthologs_simple.pl @@ -18,7 +18,7 @@ print "$curr_date\n"; if ($#ARGV !=2) { print "usage: association_file_from_orthologs.pl in_assoc_file ortho_file out_file\n"; exit; - +} # Grab the find_species subroutines to get the species and taxon id if(-e "$ENV{HOME}/scripts/jaiswallab/interactome_scripts/find_species.pl") { @@ -66,7 +66,7 @@ while() { #check if symbol found in %gene_hash if(defined($ortho_hash{$db_obj_name})) { my $ortho_gene = $ortho_hash{$db_obj_name}; - print OUTFILE "MaizeGDB\t$ortho_gene\t$ortho_gene\t$qual\t$ont_id\tPMID:24919147|PMID:21186353\tISO\tAGI_LocusCode:$db_obj_name\t$aspect\t$ortho_gene\t\t$db_obj_type\ttaxon:$new_taxon\t$curr_date\tPlanteome:Justin_Elser\t$annot_ext\t$gp_form_id\n"; + print OUTFILE "EnsemblPlants\t$ortho_gene\t$ortho_gene\t$qual\t$ont_id\tPMID:24919147|PMID:21186353\tISO\tAGI_LocusCode:$db_obj_name\t$aspect\t$ortho_gene\t\t$db_obj_type\ttaxon:$new_taxon\t$curr_date\tPlanteome:Justin_Elser\t$annot_ext\t$gp_form_id\n"; } } -- 2.34.1