From e676407f63cccaa40fafebcaeca3e0514c9dffcb Mon Sep 17 00:00:00 2001 From: cooperl Date: Wed, 13 Mar 2019 23:23:27 +0000 Subject: [PATCH] Fixing annotations on Gramene Oryza QTLs svn path=/; revision=892 --- .../peco_qtl_Oryza_sativa_Gramene.assoc | 105 +++++++++--------- .../po_anatomy_qtl_oryza_gramene.assoc | 99 +++++++++-------- .../po_growth_qtl_oryza_gramene.assoc | 94 ++++++++-------- 3 files changed, 153 insertions(+), 145 deletions(-) diff --git a/peco-associations/peco_qtl_Oryza_sativa_Gramene.assoc b/peco-associations/peco_qtl_Oryza_sativa_Gramene.assoc index d51dcde..fb831f0 100644 --- a/peco-associations/peco_qtl_Oryza_sativa_Gramene.assoc +++ b/peco-associations/peco_qtl_Oryza_sativa_Gramene.assoc @@ -62,7 +62,6 @@ GR_QTL AQFU015 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content amy3 QTL t GR_QTL AQGA017 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFA004 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content ac2.1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGA003 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content ac6b QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE022 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGA001 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content ac6a QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGA020 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU016 AMYCN PECO:0007403 GR_REF:11453 IC E amylose content amy6 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -758,29 +757,57 @@ GR_QTL AQGE007 CKKEL PECO:0007403 GR_REF:11453 IC E cooked kernel elongation GR_QTL AQGE033 CKKEL PECO:0007403 GR_REF:11453 IC E cooked kernel elongation QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGE017 CKKEL PECO:0007403 GR_REF:11453 IC E cooked kernel elongation QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGE005 CKKEL PECO:0007403 GR_REF:11453 IC E cooked kernel elongation QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE010 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE024 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE026 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE038 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE033 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE036 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE025 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE027 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE031 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE029 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE007 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE009 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE037 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE034 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE011 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE028 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE032 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE005 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE006 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE035 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE030 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE008 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE039 CLGRPCENT PECO:0007403 GR_REF:11453 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE001 FGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216|GR_ref:8143|PMID:14513216 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE002 SDDN PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E seed density QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE003 SDDN PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E seed density QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE004 GROATPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E groat percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE005 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE006 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE007 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE008 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE009 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE010 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE011 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE012 MR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E milled rice ratio QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE013 HEADR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE014 HEADR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE015 HEADR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE016 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE017 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE018 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE019 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE020 CRUSHGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E crushed grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE021 CRUSHGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E crushed grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE022 AMYCN PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E amylose content QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE023 GELCON PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE024 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE025 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE026 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE027 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE028 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE029 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE030 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE031 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE032 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE033 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE034 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE035 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE036 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE037 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE038 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE039 CLGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E colored grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE040 HEADR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE041 HEADR PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE042 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE043 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE044 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE045 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE046 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQEE047 CRKGRPCENT PECO:0007256 GR_REF:11453|GR_ref:8143|PMID:14513216 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQT028 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQT029 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQT030 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl +GR_QTL AQT031 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQDU009 COLDTL PECO:0007174 GR_REF:11453 IC E cold tolerance qCTS6-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQDU014 COLDTL PECO:0007174 GR_REF:11453 IC E cold tolerance qCTS12b QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQP8 COLDTL PECO:0007174 GR_REF:11453 IC E cold tolerance qCT-11 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -831,22 +858,6 @@ GR_QTL CQAG7 CPVIS PECO:0007403 GR_REF:11453 IC E cool paste viscosity qCPV-6- GR_QTL AQB005 CPVIS PECO:0007403 GR_REF:11453 IC E cool paste viscosity QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQAG8 CPVIS PECO:0007403 GR_REF:11453 IC E cool paste viscosity qCPV-6-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQAG6 CPVIS PECO:0007403 GR_REF:11453 IC E cool paste viscosity qCPV-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE044 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE047 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE017 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQT030 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE042 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE045 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE046 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE043 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQT028 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE016 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE018 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE019 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQT031 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQT029 CRKGRPCENT PECO:0007403 GR_REF:11453 IC E cracked grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE020 CRUSHGRPCENT PECO:0007403 GR_REF:11453 IC E crushed grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE021 CRUSHGRPCENT PECO:0007403 GR_REF:11453 IC E crushed grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFP033 CULMLG PECO:0007403 GR_REF:11453 IC E culm length cl5b QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQDY049 CULMLG PECO:0007403 GR_REF:11453 IC E culm length QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGP044 CULMLG PECO:0007403 GR_REF:11453 IC E culm length qCL-12 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2026,6 +2037,7 @@ GR_QTL AQCY091 FGRNB PECO:0007403 GR_REF:11453 IC E filled grain number QTL t GR_QTL AQCY046 FGRNB PECO:0007403 GR_REF:11453 IC E filled grain number QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQCY059 FGRNB PECO:0007403 GR_REF:11453 IC E filled grain number QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE020 FGRNB PECO:0007403 GR_REF:11453 IC E filled grain number QTL taxon:4530 20121108 Gramene|TO:Cooperl + GR_QTL AQAI078 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage qGFP3-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAW010 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAW018 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2036,7 +2048,6 @@ GR_QTL AQE066 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage GR_QTL AQE060 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE067 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAW019 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE001 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE062 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAW011 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE064 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2048,6 +2059,8 @@ GR_QTL AQAW041 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage GR_QTL AQAW020 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE065 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQE063 FGRPCENT PECO:0007403 GR_REF:11453 IC E filled grain percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl + + GR_QTL AQFQ005 FLNB PECO:0007403 GR_REF:11453 IC E flower number QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFQ004 FLNB PECO:0007403 GR_REF:11453 IC E flower number QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFQ001 FLNB PECO:0007403 GR_REF:11453 IC E flower number QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2067,7 +2080,6 @@ GR_QTL AQBP004 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency qGC-7 QTL GR_QTL AQGA023 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency gc6b QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGA028 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQBN007 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE023 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQB010 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQGA027 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQBN010 GELCON PECO:0007403 GR_REF:11453 IC E gel consistency QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2418,7 +2430,6 @@ GR_QTL AQBM006 GRNPTLDFQ PECO:0007266 GR_REF:11453 IC E green plantlet differe GR_QTL AQBM009 GRNPTLYLDFQ PECO:0007266 GR_REF:11453 IC E green plantlet yield frequency gpy-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQBM011 GRNPTLYLDFQ PECO:0007266 GR_REF:11453 IC E green plantlet yield frequency gpy-10 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQBM010 GRNPTLYLDFQ PECO:0007266 GR_REF:11453 IC E green plantlet yield frequency gpy-9 QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE004 GROATPCENT PECO:0007403 GR_REF:11453 IC E groat percentage QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFE103 GRSH PECO:0007403 GR_REF:11453 IC E grain shattering sh1.1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFE107 GRSH PECO:0007403 GR_REF:11453 IC E grain shattering sh7.1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQAH4 GRSH PECO:0007403 GR_REF:11453 IC E grain shattering qSHT-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -2776,18 +2787,13 @@ GR_QTL AQL004 HEADR PECO:0007403 GR_REF:11453 IC E head rice QHr6 QTL taxon:45 GR_QTL AQFU004 HEADR PECO:0007403 GR_REF:11453 IC E head rice hr1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQL002 HEADR PECO:0007403 GR_REF:11453 IC E head rice QHr2 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU030 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE013 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU006 HEADR PECO:0007403 GR_REF:11453 IC E head rice hr6 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU008 HEADR PECO:0007403 GR_REF:11453 IC E head rice hr11 QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE015 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU028 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE014 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU031 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE040 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU005 HEADR PECO:0007403 GR_REF:11453 IC E head rice hr3 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU029 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQR4 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE041 HEADR PECO:0007403 GR_REF:11453 IC E head rice QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU007 HEADR PECO:0007403 GR_REF:11453 IC E head rice hr8 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFE076 HGRWT PECO:0007403 GR_REF:11453 IC E 100-grain weight gw5.1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFE079 HGRWT PECO:0007403 GR_REF:11453 IC E 100-grain weight gw9.1 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -3653,7 +3659,6 @@ GR_QTL AQF137 MESLG PECO:0007403 GR_REF:11453 IC E mesocotyl length QTL taxon GR_QTL AQF133 MESLG PECO:0007403 GR_REF:11453 IC E mesocotyl length QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQDD005 MGKCNRO PECO:0007403 GR_REF:11453 IC E magnesium to potassium content ratio MgK1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU013 MR PECO:0007403 GR_REF:11453 IC E milled rice ratio mr5 QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE012 MR PECO:0007403 GR_REF:11453 IC E milled rice ratio QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQFU049 MR PECO:0007403 GR_REF:11453 IC E milled rice ratio QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL CQR3 MR PECO:0007403 GR_REF:11453 IC E milled rice ratio QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQL001 MR PECO:0007403 GR_REF:11453 IC E milled rice ratio QMr12 QTL taxon:4530 20121108 Gramene|TO:Cooperl @@ -6348,8 +6353,6 @@ GR_QTL EQC0018 SBRNB PECO:0007403 GR_REF:11453 IC E secondary branch sbr4.1 QT GR_QTL AQAW036 SBRNB PECO:0007403 GR_REF:11453 IC E secondary branch QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAB042 SBRNB PECO:0007403 GR_REF:11453 IC E secondary branch qNSB1-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQAB010 SBRNB PECO:0007403 GR_REF:11453 IC E secondary branch qNSB6-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE003 SDDN PECO:0007403 GR_REF:11453 IC E seed density QTL taxon:4530 20121108 Gramene|TO:Cooperl -GR_QTL AQEE002 SDDN PECO:0007403 GR_REF:11453 IC E seed density QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQCK005 SDDOR PECO:0007403 GR_REF:11453 IC E seed dormancy QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL AQF029 SDDOR PECO:0007403 GR_REF:11453 IC E seed dormancy QTL taxon:4530 20121108 Gramene|TO:Cooperl GR_QTL EQB0002 SDDOR PECO:0007403 GR_REF:11453 IC E seed dormancy sQD.7-1 QTL taxon:4530 20121108 Gramene|TO:Cooperl diff --git a/po-associations/po_anatomy_qtl_oryza_gramene.assoc b/po-associations/po_anatomy_qtl_oryza_gramene.assoc index c06e8b1..e229d1f 100644 --- a/po-associations/po_anatomy_qtl_oryza_gramene.assoc +++ b/po-associations/po_anatomy_qtl_oryza_gramene.assoc @@ -51,6 +51,7 @@ GR_QTL AQEZ001 ALSN PO:0009011 GR_ref:11453 IC A aluminum sensitivity QTL tax GR_QTL AQEZ003 ALSN PO:0009011 GR_ref:11453 IC A aluminum sensitivity QTL taxon:4530 20090923 Gramene GR_QTL AQEZ008 ALSN PO:0009011 GR_ref:11453 IC A aluminum sensitivity QTL taxon:4530 20090923 Gramene GR_QTL AQEZ004 ALSN PO:0009011 GR_ref:11453 IC A aluminum sensitivity QTL taxon:4530 20090923 Gramene + GR_QTL AQFA002 AMYCN PO:0030104 GR_ref:8297 IMP A amylose content ac12.1 QTL taxon:4530 20090923 Gramene GR_QTL AQGA007 AMYCN PO:0030104 GR_ref:11453 IC A amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQGA015 AMYCN PO:0030104 GR_ref:11453 IC A amylose content QTL taxon:4530 20090923 Gramene @@ -64,7 +65,7 @@ GR_QTL AQFU015 AMYCN PO:0030104 GR_ref:8212 IMP A amylose content amy3 QTL tax GR_QTL AQGA017 AMYCN PO:0030104 GR_ref:11453 IC A amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQFA004 AMYCN PO:0030104 GR_ref:8297 IMP A amylose content ac2.1 QTL taxon:4530 20090923 Gramene GR_QTL AQGA003 AMYCN PO:0030104 GR_ref:11453 IC A amylose content ac6b QTL taxon:4530 20090923 Gramene -GR_QTL AQEE022 AMYCN PO:0030104 GR_ref:8143 IMP A amylose content QTL taxon:4530 20090923 Gramene +GR_QTL AQEE022 AMYCN PO:0030104 GR_ref:8143|PMID:14513216 IMP A amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQGA001 AMYCN PO:0030104 GR_ref:11453 IC A amylose content ac6a QTL taxon:4530 20090923 Gramene GR_QTL AQGA020 AMYCN PO:0030104 GR_ref:11453 IC A amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQFU016 AMYCN PO:0030104 GR_ref:8212 IMP A amylose content amy6 QTL taxon:4530 20090923 Gramene @@ -102,6 +103,7 @@ GR_QTL AQFA005 AMYCN PO:0030104 GR_ref:8297 IMP A amylose content ac2.2 QTL ta GR_QTL AQFU017 AMYCN PO:0030104 GR_ref:8212 IMP A amylose content amy8 QTL taxon:4530 20090923 Gramene GR_QTL AQBP002 AMYCN PO:0030104 GR_ref:11453 IC A amylose content Wx QTL taxon:4530 20090923 Gramene GR_QTL AQGA014 AMYCN PO:0030104 GR_ref:11453 IC A amylose content QTL taxon:4530 20090923 Gramene + GR_QTL AQF065 ANTLG PO:0009066 GR_ref:7750 IMP A anther length QTL taxon:4530 20090923 Gramene GR_QTL AQCC002 ANTLG PO:0009066 GR_ref:7816 IMP A anther length qATL-9 QTL taxon:4530 20090923 Gramene GR_QTL CQO2 ANTLG PO:0009066 GR_ref:7827 IMP A anther length ctb-1 QTL taxon:4530 20090923 Gramene @@ -139,6 +141,7 @@ GR_QTL AQF113 APIHLG PO:0006033 GR_ref:7750 IMP A apiculus hair length QTL ta GR_QTL AQF108 APIHLG PO:0006033 GR_ref:7750 IMP A apiculus hair length QTL taxon:4530 20090923 Gramene GR_QTL AQF116 APIHLG PO:0006033 GR_ref:7750 IMP A apiculus hair length QTL taxon:4530 20090923 Gramene GR_QTL AQF110 APIHLG PO:0006033 GR_ref:7750 IMP A apiculus hair length QTL taxon:4530 20090923 Gramene + GR_QTL CQAP3 AROMA PO:0009011 GR_ref:11453 IC A scent QTL taxon:4530 20090923 Gramene GR_QTL CQAP3 AROMA PO:0030104 GR_ref:2517 IMP A scent QTL taxon:4530 20090923 Gramene GR_QTL CQAP1 AROMA PO:0009011 GR_ref:11453 IC A scent QTL taxon:4530 20090923 Gramene @@ -819,29 +822,29 @@ GR_QTL AQGE007 CKKEL PO:0030104 GR_ref:11453 IC A cooked kernel elongation QT GR_QTL AQGE033 CKKEL PO:0030104 GR_ref:11453 IC A cooked kernel elongation QTL taxon:4530 20090923 Gramene GR_QTL AQGE017 CKKEL PO:0030104 GR_ref:11453 IC A cooked kernel elongation QTL taxon:4530 20090923 Gramene GR_QTL AQGE005 CKKEL PO:0030104 GR_ref:11453 IC A cooked kernel elongation QTL taxon:4530 20090923 Gramene -GR_QTL AQEE010 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE024 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE026 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE038 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE033 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE036 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE025 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE027 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE031 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE029 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE007 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE009 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE037 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE034 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE011 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE028 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE032 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 ICP A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE005 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE006 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE035 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE030 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE008 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE039 CLGRPCENT PO:0030104 GR_ref:8143|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE010 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE024 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE026 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE038 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE033 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE036 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE025 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE027 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE031 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE029 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE007 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE009 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE037 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE034 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE011 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE028 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE032 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 ICP A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE005 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE006 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE035 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE030 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE008 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE039 CLGRPCENT PO:0030104 GR_ref:8143|PMID:14513216|GR_ref:11453 IC A colored grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQDU009 COLDTL PO:0009011 GR_ref:11453 IC A cold tolerance qCTS6-1 QTL taxon:4530 20090923 Gramene GR_QTL AQDU014 COLDTL PO:0009011 GR_ref:11453 IC A cold tolerance qCTS12b QTL taxon:4530 20090923 Gramene GR_QTL CQP8 COLDTL PO:0009011 GR_ref:11453 IC A cold tolerance qCT-11 QTL taxon:4530 20090923 Gramene @@ -905,33 +908,33 @@ GR_QTL CQAG7 CPVIS PO:0030104 GR_ref:11453 IC A cool paste viscosity qCPV-6-1 GR_QTL AQB005 CPVIS PO:0030104 GR_ref:7767 IMP A cool paste viscosity QTL taxon:4530 20090923 Gramene GR_QTL CQAG8 CPVIS PO:0030104 GR_ref:11453 IC A cool paste viscosity qCPV-6-1 QTL taxon:4530 20090923 Gramene GR_QTL CQAG6 CPVIS PO:0030104 GR_ref:11453 IC A cool paste viscosity qCPV-1 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE044 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE044 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE044 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE047 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE047 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE047 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE017 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE017 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE017 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT030 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE042 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE042 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE042 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE045 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE045 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE045 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE046 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE046 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE046 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE043 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE043 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE043 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT028 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE016 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE016 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE016 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE018 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE018 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE018 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE019 CRKGRPCENT PO:0030104 GR_ref:8143 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE019 CRKGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE019 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT031 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT029 CRKGRPCENT PO:0030104 GR_ref:11453 IC A cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE020 CRUSHGRPCENT PO:0030104 GR_ref:8143 IMP A crushed grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE020 CRUSHGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A crushed grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE020 CRUSHGRPCENT PO:0030104 GR_ref:11453 IC A crushed grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE021 CRUSHGRPCENT PO:0030104 GR_ref:8143 IMP A crushed grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE021 CRUSHGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A crushed grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE021 CRUSHGRPCENT PO:0030104 GR_ref:11453 IC A crushed grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQFP033 CULMLG PO:0009047 GR_ref:11453 IC A culm length cl5b QTL taxon:4530 20090923 Gramene GR_QTL AQDY049 CULMLG PO:0009047 GR_ref:11453 IC A culm length QTL taxon:4530 20090923 Gramene @@ -2150,6 +2153,7 @@ GR_QTL AQCY046 FGRNB PO:0030104 GR_ref:11453 IC A filled grain number QTL tax GR_QTL AQCY059 FGRNB PO:0030104 GR_ref:11453 IC A filled grain number QTL taxon:4530 20090923 Gramene GR_QTL AQE020 FGRNB PO:0030104 GR_ref:11453 IC A filled grain number QTL taxon:4530 20090923 Gramene GR_QTL AQAI078 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage qGFP3-1 QTL taxon:4530 20090923 Gramene + GR_QTL AQAW010 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW018 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW032 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene @@ -2159,7 +2163,7 @@ GR_QTL AQE066 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage Q GR_QTL AQE060 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE067 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW019 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE001 FGRPCENT PO:0030104 GR_ref:8143 IMP A filled grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE001 FGRPCENT PO:0030104 GR_ref:8143|PMID:14513216 IMP A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE062 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW011 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE064 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene @@ -2171,6 +2175,7 @@ GR_QTL AQAW041 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage GR_QTL AQAW020 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE065 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE063 FGRPCENT PO:0030104 GR_ref:11453 IC A filled grain percentage QTL taxon:4530 20090923 Gramene + GR_QTL AQFQ005 FLNB PO:0009046 GR_ref:11453 IC A flower number QTL taxon:4530 20090923 Gramene GR_QTL AQFQ004 FLNB PO:0009046 GR_ref:11453 IC A flower number QTL taxon:4530 20090923 Gramene GR_QTL AQFQ001 FLNB PO:0009046 GR_ref:11453 IC A flower number QTL taxon:4530 20090923 Gramene @@ -2190,7 +2195,7 @@ GR_QTL AQBP004 GELCON PO:0030104 GR_ref:11453 IC A gel consistency qGC-7 QTL t GR_QTL AQGA023 GELCON PO:0030104 GR_ref:11453 IC A gel consistency gc6b QTL taxon:4530 20090923 Gramene GR_QTL AQGA028 GELCON PO:0030104 GR_ref:11453 IC A gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQBN007 GELCON PO:0030104 GR_ref:11453 IC A gel consistency QTL taxon:4530 20090923 Gramene -GR_QTL AQEE023 GELCON PO:0030104 GR_ref:8143 IMP A gel consistency QTL taxon:4530 20090923 Gramene +GR_QTL AQEE023 GELCON PO:0030104 GR_ref:8143|PMID:14513216 IMP A gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQB010 GELCON PO:0030104 GR_ref:7767 IMP A gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQGA027 GELCON PO:0030104 GR_ref:11453 IC A gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQBN010 GELCON PO:0030104 GR_ref:11453 IC A gel consistency QTL taxon:4530 20090923 Gramene @@ -2577,7 +2582,7 @@ GR_QTL AQAG024 GRNB PO:0030104 GR_ref:11453 IC A grain number gp1b QTL taxon:4 GR_QTL AQAG027 GRNB PO:0030104 GR_ref:11453 IC A grain number gp7a QTL taxon:4530 20090923 Gramene GR_QTL CQAJ6 GRNB PO:0030104 GR_ref:11453 IC A grain number gp3 QTL taxon:4530 20090923 Gramene GR_QTL AQEE004 GROATPCENT PO:0030104 GR_ref:11453 IC A groat percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE004 GROATPCENT PO:0009025 GR_ref:8143 IMP A groat percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE004 GROATPCENT PO:0009025 GR_ref:8143|PMID:14513216 IMP A groat percentage QTL taxon:4530 20090923 Gramene GR_QTL AQFE103 GRSH PO:0030104 GR_ref:8323 IMP A grain shattering sh1.1 QTL taxon:4530 20090923 Gramene GR_QTL AQFE103 GRSH PO:0030104 GR_ref:11453 IC A grain shattering sh1.1 QTL taxon:4530 20090923 Gramene GR_QTL AQFE107 GRSH PO:0030104 GR_ref:8323 IMP A grain shattering sh7.1 QTL taxon:4530 20090923 Gramene @@ -3067,18 +3072,18 @@ GR_QTL AQL004 HEADR PO:0030104 GR_ref:11453 IC A head rice QHr6 QTL taxon:4530 GR_QTL AQFU004 HEADR PO:0030104 GR_ref:8212 IMP A head rice hr1 QTL taxon:4530 20090923 Gramene GR_QTL AQL002 HEADR PO:0030104 GR_ref:11453 IC A head rice QHr2 QTL taxon:4530 20090923 Gramene GR_QTL AQFU030 HEADR PO:0030104 GR_ref:8212 IMP A head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE013 HEADR PO:0030104 GR_ref:8143 IMP A head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE013 HEADR PO:0030104 GR_ref:8143|PMID:14513216 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU006 HEADR PO:0030104 GR_ref:8212 IMP A head rice hr6 QTL taxon:4530 20090923 Gramene GR_QTL AQFU008 HEADR PO:0030104 GR_ref:8212 IMP A head rice hr11 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE015 HEADR PO:0030104 GR_ref:8143 IMP A head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE015 HEADR PO:0030104 GR_ref:8143|PMID:14513216 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU028 HEADR PO:0030104 GR_ref:8212 IMP A head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE014 HEADR PO:0030104 GR_ref:8143 IMP A head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE014 HEADR PO:0030104 GR_ref:8143|PMID:14513216 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU031 HEADR PO:0030104 GR_ref:8212 IMP A head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE040 HEADR PO:0030104 GR_ref:8143 IMP A head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE040 HEADR PO:0030104 GR_ref:8143|PMID:14513216 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU005 HEADR PO:0030104 GR_ref:8212 IMP A head rice hr3 QTL taxon:4530 20090923 Gramene GR_QTL AQFU029 HEADR PO:0030104 GR_ref:8212 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL CQR4 HEADR PO:0030104 GR_ref:11453 IC A head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE041 HEADR PO:0030104 GR_ref:8143 IMP A head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE041 HEADR PO:0030104 GR_ref:8143|PMID:14513216 IMP A head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU007 HEADR PO:0030104 GR_ref:8212 IMP A head rice hr8 QTL taxon:4530 20090923 Gramene GR_QTL AQFE076 HGRWT PO:0030104 GR_ref:8323 IMP A 100-grain weight gw5.1 QTL taxon:4530 20090923 Gramene GR_QTL AQFE076 HGRWT PO:0030104 GR_ref:11453 IC A 100-grain weight gw5.1 QTL taxon:4530 20090923 Gramene @@ -4187,7 +4192,7 @@ GR_QTL AQF133 MESLG PO:0020037 GR_ref:7750 IMP A mesocotyl length QTL taxon:4 GR_QTL AQF133 MESLG PO:0009002 GR_ref:11453 IC A mesocotyl length QTL taxon:4530 20090923 Gramene GR_QTL AQDD005 MGKCNRO PO:0009011 GR_ref:11453 IC A magnesium to potassium content ratio MgK1 QTL taxon:4530 20090923 Gramene GR_QTL AQFU013 MR PO:0030104 GR_ref:8212 IMP A milled rice ratio mr5 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE012 MR PO:0030104 GR_ref:8143 IMP A milled rice ratio QTL taxon:4530 20090923 Gramene +GR_QTL AQEE012 MR PO:0030104 GR_ref:8143|PMID:14513216 IMP A milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL AQFU049 MR PO:0030104 GR_ref:8212 IMP A milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL CQR3 MR PO:0030104 GR_ref:11453 IC A milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL AQL001 MR PO:0030104 GR_ref:11453 IC A milled rice ratio QMr12 QTL taxon:4530 20090923 Gramene @@ -7067,8 +7072,8 @@ GR_QTL EQC0018 SBRNB PO:0006322 GR_ref:11393 IMP A secondary branch sbr4.1 QTL GR_QTL AQAW036 SBRNB PO:0006322 GR_ref:11453 IC A secondary branch QTL taxon:4530 20090923 Gramene GR_QTL AQAB042 SBRNB PO:0006322 GR_ref:11453 IC A secondary branch qNSB1-1 QTL taxon:4530 20090923 Gramene GR_QTL AQAB010 SBRNB PO:0006322 GR_ref:11453 IC A secondary branch qNSB6-1 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE003 SDDN PO:0030104 GR_ref:8143 IMP A seed density QTL taxon:4530 20090923 Gramene -GR_QTL AQEE002 SDDN PO:0030104 GR_ref:8143 IMP A seed density QTL taxon:4530 20090923 Gramene +GR_QTL AQEE003 SDDN PO:0030104 GR_ref:8143|PMID:14513216 IMP A seed density QTL taxon:4530 20090923 Gramene +GR_QTL AQEE002 SDDN PO:0030104 GR_ref:8143|PMID:14513216 IMP A seed density QTL taxon:4530 20090923 Gramene GR_QTL AQCK005 SDDOR PO:0030104 GR_ref:2466 IMP A seed dormancy QTL taxon:4530 20090923 Gramene GR_QTL AQF029 SDDOR PO:0030104 GR_ref:7750 IMP A seed dormancy QTL taxon:4530 20090923 Gramene GR_QTL EQB0002 SDDOR PO:0030104 GR_ref:11515 IMP A seed dormancy sQD.7-1 QTL taxon:4530 20090923 Gramene diff --git a/po-associations/po_growth_qtl_oryza_gramene.assoc b/po-associations/po_growth_qtl_oryza_gramene.assoc index fc79dd4..c757070 100644 --- a/po-associations/po_growth_qtl_oryza_gramene.assoc +++ b/po-associations/po_growth_qtl_oryza_gramene.assoc @@ -110,7 +110,7 @@ GR_QTL AQFU015 AMYCN PO:0007038 GR_ref:8212 IMP G amylose content amy3 QTL tax GR_QTL AQGA017 AMYCN PO:0007038 GR_ref:11453 IC G amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQFA004 AMYCN PO:0007038 GR_ref:8297 IMP G amylose content ac2.1 QTL taxon:4530 20090923 Gramene GR_QTL AQGA003 AMYCN PO:0007038 GR_ref:11453 IC G amylose content ac6b QTL taxon:4530 20090923 Gramene -GR_QTL AQEE022 AMYCN PO:0007038 GR_ref:8143 IMP G amylose content QTL taxon:4530 20090923 Gramene +GR_QTL AQEE022 AMYCN PO:0007038 GR_ref:8143|PMID:14513216 IMP G amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQGA001 AMYCN PO:0007038 GR_ref:11453 IC G amylose content ac6a QTL taxon:4530 20090923 Gramene GR_QTL AQGA020 AMYCN PO:0007038 GR_ref:11453 IC G amylose content QTL taxon:4530 20090923 Gramene GR_QTL AQFU016 AMYCN PO:0007038 GR_ref:8212 IMP G amylose content amy6 QTL taxon:4530 20090923 Gramene @@ -1225,29 +1225,29 @@ GR_QTL AQGE007 CKKEL PO:0007130 GR_ref:11453 IC G cooked kernel elongation QT GR_QTL AQGE033 CKKEL PO:0007130 GR_ref:11453 IC G cooked kernel elongation QTL taxon:4530 20090923 Gramene GR_QTL AQGE017 CKKEL PO:0007130 GR_ref:11453 IC G cooked kernel elongation QTL taxon:4530 20090923 Gramene GR_QTL AQGE005 CKKEL PO:0007130 GR_ref:11453 IC G cooked kernel elongation QTL taxon:4530 20090923 Gramene -GR_QTL AQEE010 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE024 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE026 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE038 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE033 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE036 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE025 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE027 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE031 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE029 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE007 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE009 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE037 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE034 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE011 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE028 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE032 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE005 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE006 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE035 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE030 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE008 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE039 CLGRPCENT PO:0007038 GR_ref:8143 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE010 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE024 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE026 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE038 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE033 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE036 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE025 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE027 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE031 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE029 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE007 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE009 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE037 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE034 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE011 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE028 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE032 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE005 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE006 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE035 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE030 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE008 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE039 CLGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G colored grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQDU009 COLDTL PO:0009012 GR_ref:11453 IC G cold tolerance qCTS6-1 QTL taxon:4530 20090923 Gramene GR_QTL AQDU009 COLDTL PO:0007033 GR_ref:11453 IC G cold tolerance qCTS6-1 QTL taxon:4530 20090923 Gramene GR_QTL AQDU014 COLDTL PO:0009012 GR_ref:11453 IC G cold tolerance qCTS12b QTL taxon:4530 20090923 Gramene @@ -1346,22 +1346,22 @@ GR_QTL CQAG7 CPVIS PO:0007038 GR_ref:11453 IC G cool paste viscosity qCPV-6-1 GR_QTL AQB005 CPVIS PO:0007038 GR_ref:7767 IMP G cool paste viscosity QTL taxon:4530 20090923 Gramene GR_QTL CQAG8 CPVIS PO:0007038 GR_ref:11453 IC G cool paste viscosity qCPV-6-1 QTL taxon:4530 20090923 Gramene GR_QTL CQAG6 CPVIS PO:0007038 GR_ref:11453 IC G cool paste viscosity qCPV-1 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE044 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE047 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE017 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE044 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE047 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE017 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT030 CRKGRPCENT PO:0007038 GR_ref:11453 IC G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE042 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE045 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE046 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE043 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE042 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE045 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE046 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE043 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT028 CRKGRPCENT PO:0007038 GR_ref:11453 IC G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE016 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE018 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE019 CRKGRPCENT PO:0007038 GR_ref:8143 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE016 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE018 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE019 CRKGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT031 CRKGRPCENT PO:0007038 GR_ref:11453 IC G cracked grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQT029 CRKGRPCENT PO:0007038 GR_ref:11453 IC G cracked grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE020 CRUSHGRPCENT PO:0007038 GR_ref:8143 IMP G crushed grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE021 CRUSHGRPCENT PO:0007038 GR_ref:8143 IMP G crushed grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE020 CRUSHGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G crushed grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE021 CRUSHGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G crushed grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQFP033 CULMLG PO:0007134 GR_ref:11453 IC G culm length cl5b QTL taxon:4530 20090923 Gramene GR_QTL AQFP033 CULMLG PO:0007130 GR_ref:11453 IC G culm length cl5b QTL taxon:4530 20090923 Gramene GR_QTL AQDY049 CULMLG PO:0007134 GR_ref:11453 IC G culm length QTL taxon:4530 20090923 Gramene @@ -3282,7 +3282,7 @@ GR_QTL AQE066 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage Q GR_QTL AQE060 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE067 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW019 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene -GR_QTL AQEE001 FGRPCENT PO:0007038 GR_ref:8143 IMP G filled grain percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE001 FGRPCENT PO:0007038 GR_ref:8143|PMID:14513216 IMP G filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE062 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQAW011 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene GR_QTL AQE064 FGRPCENT PO:0007038 GR_ref:11453 IC G filled grain percentage QTL taxon:4530 20090923 Gramene @@ -3313,7 +3313,7 @@ GR_QTL AQBP004 GELCON PO:0007038 GR_ref:11453 IC G gel consistency qGC-7 QTL t GR_QTL AQGA023 GELCON PO:0007038 GR_ref:11453 IC G gel consistency gc6b QTL taxon:4530 20090923 Gramene GR_QTL AQGA028 GELCON PO:0007038 GR_ref:11453 IC G gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQBN007 GELCON PO:0007038 GR_ref:11453 IC G gel consistency QTL taxon:4530 20090923 Gramene -GR_QTL AQEE023 GELCON PO:0007038 GR_ref:8143 IMP G gel consistency QTL taxon:4530 20090923 Gramene +GR_QTL AQEE023 GELCON PO:0007038 GR_ref:8143|PMID:14513216 IMP G gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQB010 GELCON PO:0007038 GR_ref:7767 IMP G gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQGA027 GELCON PO:0007038 GR_ref:11453 IC G gel consistency QTL taxon:4530 20090923 Gramene GR_QTL AQBN010 GELCON PO:0007038 GR_ref:11453 IC G gel consistency QTL taxon:4530 20090923 Gramene @@ -3671,7 +3671,7 @@ GR_QTL AQBM011 GRNPTLYLDFQ PO:0009012 GR_ref:11453 IC G green plantlet yield f GR_QTL AQBM011 GRNPTLYLDFQ PO:0007033 GR_ref:11453 IC G green plantlet yield frequency gpy-10 QTL taxon:4530 20090923 Gramene GR_QTL AQBM010 GRNPTLYLDFQ PO:0009012 GR_ref:11453 IC G green plantlet yield frequency gpy-9 QTL taxon:4530 20090923 Gramene GR_QTL AQBM010 GRNPTLYLDFQ PO:0007033 GR_ref:11453 IC G green plantlet yield frequency gpy-9 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE004 GROATPCENT PO:0007017 GR_ref:8143 IMP G groat percentage QTL taxon:4530 20090923 Gramene +GR_QTL AQEE004 GROATPCENT PO:0007017 GR_ref:8143|PMID:14513216 IMP G groat percentage QTL taxon:4530 20090923 Gramene GR_QTL AQEE004 GROATPCENT PO:0007038 GR_ref:11453 IC G groat percentage QTL taxon:4530 20090923 Gramene GR_QTL AQFE103 GRSH PO:0007038 GR_ref:8323 IMP G grain shattering sh1.1 QTL taxon:4530 20090923 Gramene GR_QTL AQFE107 GRSH PO:0007038 GR_ref:8323 IMP G grain shattering sh7.1 QTL taxon:4530 20090923 Gramene @@ -4060,18 +4060,18 @@ GR_QTL AQL004 HEADR PO:0007038 GR_ref:11453 IC G head rice QHr6 QTL taxon:4530 GR_QTL AQFU004 HEADR PO:0007038 GR_ref:8212 IMP G head rice hr1 QTL taxon:4530 20090923 Gramene GR_QTL AQL002 HEADR PO:0007038 GR_ref:11453 IC G head rice QHr2 QTL taxon:4530 20090923 Gramene GR_QTL AQFU030 HEADR PO:0007038 GR_ref:8212 IMP G head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE013 HEADR PO:0007038 GR_ref:8143 IMP G head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE013 HEADR PO:0007038 GR_ref:8143|PMID:14513216 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU006 HEADR PO:0007038 GR_ref:8212 IMP G head rice hr6 QTL taxon:4530 20090923 Gramene GR_QTL AQFU008 HEADR PO:0007038 GR_ref:8212 IMP G head rice hr11 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE015 HEADR PO:0007038 GR_ref:8143 IMP G head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE015 HEADR PO:0007038 GR_ref:8143|PMID:14513216 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU028 HEADR PO:0007038 GR_ref:8212 IMP G head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE014 HEADR PO:0007038 GR_ref:8143 IMP G head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE014 HEADR PO:0007038 GR_ref:8143|PMID:14513216 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU031 HEADR PO:0007038 GR_ref:8212 IMP G head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE040 HEADR PO:0007038 GR_ref:8143 IMP G head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE040 HEADR PO:0007038 GR_ref:8143|PMID:14513216 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU005 HEADR PO:0007038 GR_ref:8212 IMP G head rice hr3 QTL taxon:4530 20090923 Gramene GR_QTL AQFU029 HEADR PO:0007038 GR_ref:8212 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL CQR4 HEADR PO:0007038 GR_ref:11453 IC G head rice QTL taxon:4530 20090923 Gramene -GR_QTL AQEE041 HEADR PO:0007038 GR_ref:8143 IMP G head rice QTL taxon:4530 20090923 Gramene +GR_QTL AQEE041 HEADR PO:0007038 GR_ref:8143|PMID:14513216 IMP G head rice QTL taxon:4530 20090923 Gramene GR_QTL AQFU007 HEADR PO:0007038 GR_ref:8212 IMP G head rice hr8 QTL taxon:4530 20090923 Gramene GR_QTL AQFE076 HGRWT PO:0007038 GR_ref:8323 IMP G 100-grain weight gw5.1 QTL taxon:4530 20090923 Gramene GR_QTL AQFE079 HGRWT PO:0007038 GR_ref:8323 IMP G 100-grain weight gw9.1 QTL taxon:4530 20090923 Gramene @@ -5754,7 +5754,7 @@ GR_QTL AQF133 MESLG PO:0007057 GR_ref:7750 IMP G mesocotyl length QTL taxon:4 GR_QTL AQDD005 MGKCNRO PO:0009012 GR_ref:11453 IC G magnesium to potassium content ratio MgK1 QTL taxon:4530 20090923 Gramene GR_QTL AQDD005 MGKCNRO PO:0007033 GR_ref:11453 IC G magnesium to potassium content ratio MgK1 QTL taxon:4530 20090923 Gramene GR_QTL AQFU013 MR PO:0007038 GR_ref:8212 IMP G milled rice ratio mr5 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE012 MR PO:0007038 GR_ref:8143 IMP G milled rice ratio QTL taxon:4530 20090923 Gramene +GR_QTL AQEE012 MR PO:0007038 GR_ref:8143|PMID:14513216 IMP G milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL AQFU049 MR PO:0007038 GR_ref:8212 IMP G milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL CQR3 MR PO:0007038 GR_ref:11453 IC G milled rice ratio QTL taxon:4530 20090923 Gramene GR_QTL AQL001 MR PO:0007038 GR_ref:11453 IC G milled rice ratio QMr12 QTL taxon:4530 20090923 Gramene @@ -10985,8 +10985,8 @@ GR_QTL EQC0018 SBRNB PO:0007130 GR_ref:11393 IMP G secondary branch sbr4.1 QTL GR_QTL AQAW036 SBRNB PO:0007130 GR_ref:11453 IC G secondary branch QTL taxon:4530 20090923 Gramene GR_QTL AQAB042 SBRNB PO:0007130 GR_ref:11453 IC G secondary branch qNSB1-1 QTL taxon:4530 20090923 Gramene GR_QTL AQAB010 SBRNB PO:0007130 GR_ref:11453 IC G secondary branch qNSB6-1 QTL taxon:4530 20090923 Gramene -GR_QTL AQEE003 SDDN PO:0007038 GR_ref:8143 IMP G seed density QTL taxon:4530 20090923 Gramene -GR_QTL AQEE002 SDDN PO:0007038 GR_ref:8143 IMP G seed density QTL taxon:4530 20090923 Gramene +GR_QTL AQEE003 SDDN PO:0007038 GR_ref:8143|PMID:14513216 IMP G seed density QTL taxon:4530 20090923 Gramene +GR_QTL AQEE002 SDDN PO:0007038 GR_ref:8143|PMID:14513216 IMP G seed density QTL taxon:4530 20090923 Gramene GR_QTL AQCK005 SDDOR PO:0007132 GR_ref:2466 IMP G seed dormancy QTL taxon:4530 20090923 Gramene GR_QTL AQCK005 SDDOR PO:0007038 GR_ref:11453 IC G seed dormancy QTL taxon:4530 20090923 Gramene GR_QTL AQF029 SDDOR PO:0007132 GR_ref:7750 IMP G seed dormancy QTL taxon:4530 20090923 Gramene -- 2.34.1