From e6ecbcc7873777126b35c27f11345ad7618cf33b Mon Sep 17 00:00:00 2001 From: Laurel Cooper Date: Tue, 30 Sep 2025 15:58:02 -0600 Subject: [PATCH] Fixing references --- peco-associations/peco_gene_Oryza_Gramene.assoc | 1 - peco-associations/peco_protein_Oryza_Gramene.assoc | 10 +++++----- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/peco-associations/peco_gene_Oryza_Gramene.assoc b/peco-associations/peco_gene_Oryza_Gramene.assoc index cadfb1f..1c20e8c 100644 --- a/peco-associations/peco_gene_Oryza_Gramene.assoc +++ b/peco-associations/peco_gene_Oryza_Gramene.assoc @@ -951,7 +951,6 @@ GR_gene GR:0080027 HTD1 PECO:0007403 GR_REF:11422 IMP E High-Tillering Dwarf1 GR_gene GR:0020303 bhlh166 PECO:0007403 GR_REF:11280 IMP E basic/helix-loop-helix 166 basic helix loop helix 166|OsbHLH166|LOC_Os03g21970 gene taxon:4530 20121108 Gramene GR_gene GR:0080028 REH1 PECO:0007067 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0080028 REH1 PECO:0007248 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl -GR_gene GR:0080028 REH1 PECO:0007067 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0080028 REH1 PECO:0007204 DOI:10.1093/pcp/pci183 IMP E rice EIR1-like OsPIN1|PIN-FORMED|PIN1|LOC_Os02g50960 gene taxon:4530 20121108 Gramene|PECO:cooperl GR_gene GR:0101188 flo4 PECO:0007105 GR_REF:11107 IMP E floury endosperm 4 PPDKB|OsPPDKB|pyruvate orthophosphate dikinase|pyruvate orthophosphate dikinase B|cytosolic pyruvate orthophosphate dikinase|cyOsPPDKB|orthophosphate dikinase|Pyruvate phosphate dikinase|LOC_Os05g33570 gene taxon:4530 20121108 Gramene GR_gene GR:0101188 flo4 PECO:0007199 GR_REF:11107 IMP E floury endosperm 4 PPDKB|OsPPDKB|pyruvate orthophosphate dikinase|pyruvate orthophosphate dikinase B|cytosolic pyruvate orthophosphate dikinase|cyOsPPDKB|orthophosphate dikinase|Pyruvate phosphate dikinase|LOC_Os05g33570 gene taxon:4530 20121108 Gramene diff --git a/peco-associations/peco_protein_Oryza_Gramene.assoc b/peco-associations/peco_protein_Oryza_Gramene.assoc index 4a56e67..7afc89b 100644 --- a/peco-associations/peco_protein_Oryza_Gramene.assoc +++ b/peco-associations/peco_protein_Oryza_Gramene.assoc @@ -1,7 +1,7 @@ !gaf-version: 2.0 !DB DB_Object_ID DB_Object_Symbol Qualifier GOid DB:Reference Evidence With(or)From Aspect DB_Object_Name DB_Object_Synonym DB_Object_Type Taxon Date Assigned_by -GR_protein P53682 SPK PECO:0007255 GR_REF:11089 IC E Calcium-dependent protein kinase, isoform 1 CDPK 1 protein taxon:39947 20070430 Gramene -GR_protein P53682 SPK PECO:0007248 GR_REF:11089 IC E Calcium-dependent protein kinase, isoform 1 CDPK 1 protein taxon:39947 20070430 Gramene +GR_protein P53682 SPK PECO:0007255 GR_REF:1980 IC E Calcium-dependent protein kinase, isoform 1 CDPK 1 protein taxon:39947 20070430 Gramene +GR_protein P53682 SPK PECO:0007248 GR_REF:1980 IC E Calcium-dependent protein kinase, isoform 1 CDPK 1 protein taxon:39947 20070430 Gramene GR_protein P93438 SAMS2 PECO:0007048 GR_REF:11089 IC E S-adenosyl-L-methionine synthetase 2 AdoMet synthetase 2|Methionine adenosyltransferase 2|S-adenosylmethionine synthetase 2|SAM2 protein taxon:4530 20080701 Gramene GR_protein Q40640 Xa21 PECO:0007257 GR_REF:11089 IC E Receptor kinase-like protein protein taxon:4530 20070105 Gramene GR_protein Q9XJ66 MADS22 PECO:0007248 GR_REF:11425 IMP E MADS-box transcription factor 22 OsMADS22|RMD1 protein taxon:39947 20061215 Gramene @@ -122,9 +122,9 @@ GR_protein Q7EAG4 dmc1B PECO:0007255 GR_REF:11089 IC E Dmc1 protein type B pr GR_protein Q7GBF7 OsDMC1B PECO:0007255 GR_REF:11089 IC E DMC1 dmc1 protein taxon:39947 20060831 Gramene GR_protein Q7GBF8 OsDMC1A PECO:0007255 GR_REF:11089 IC E DMC1 protein taxon:39947 20060831 Gramene GR_protein Q6IEL0 WRKY71 PECO:0007246 GR_REF:11287 IMP E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene -GR_protein Q6IEL0 WRKY71 PECO:0007191 GR_REF:11089 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene -GR_protein Q6IEL0 WRKY71 PECO:0007248 GR_REF:11089 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene -GR_protein Q6IEL0 WRKY71 PECO:0007255 GR_REF:11089 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene +GR_protein Q6IEL0 WRKY71 PECO:0007191 GR_REF:11287 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene +GR_protein Q6IEL0 WRKY71 PECO:0007248 GR_REF:11287 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene +GR_protein Q6IEL0 WRKY71 PECO:0007255 GR_REF:11287 IC E WRKY transcription factor 71 OsWRKY71 protein taxon:39947 20060831 Gramene GR_protein Q6H543 IAA7 PECO:0007269 GR_REF:11066 IC E Auxin-responsive protein IAA7 OSJNBb0035N08.7|P0620H05.33|Putative aux/IAA protein protein taxon:39946 20060831 Gramene GR_protein Q6I581 GH3.5 PECO:0007269 GR_REF:11077 IC E Probable indole-3-acetic acid-amido synthetase GH3.5 Auxin-responsive GH3-like protein 5|OSJNBa0009C07.16|OsGH3.5 protein taxon:39947 20060831 Gramene GR_protein Q6E7D7 Q6E7D7 PECO:0007255 GR_REF:11089 IC E Syn-copalyl diphosphate synthase protein taxon:39946 20080220 Gramene -- 2.34.1