From f322a591ed8b71cbf106e85ed48fbdd4773bd1a5 Mon Sep 17 00:00:00 2001 From: cooperl Date: Mon, 18 Nov 2024 16:32:49 +0000 Subject: [PATCH] Fixed a few gene names and missing symbols svn path=/; revision=1127 --- po-associations/po_anatomy_gene_oryza_poc.assoc | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/po-associations/po_anatomy_gene_oryza_poc.assoc b/po-associations/po_anatomy_gene_oryza_poc.assoc index 2774cd4..26e587e 100644 --- a/po-associations/po_anatomy_gene_oryza_poc.assoc +++ b/po-associations/po_anatomy_gene_oryza_poc.assoc @@ -1734,7 +1734,7 @@ RAP-DB Os06g0110200 Os06g0110200 PO:0009089 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os06g0115000 Os06g0115000 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os06g0117200 Os06g0117200 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Hypothetical protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os06g0124900 Os06g0124900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal -RAP-DB Os06g0127500 Os06g0127500 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A MEG5 RNA recognition motif containing protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal +RAP-DB Os06g0127500 Os06g0127500 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Hypothetical conserved gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os06g0129700 Os06g0129700 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A NUDIX hydrolase domain containing protein hydrolase, NUDIX family, domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os06g0133000 Os06g0133000 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Granule-bound starch synthase I, chloroplast precursor (EC 24121) starch synthase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os06g0136000 Os06g0136000 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Hypersensitive-induced reaction protein 4 hypersensitive-induced response protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal @@ -2303,7 +2303,7 @@ RAP-DB Os08g0277900 Os08g0277900 PO:0009089 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os08g0287200 Os08g0287200 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0290700 Os08g0290700 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A O-methyltransferase, family 2 domain containing protein O-methyltransferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0295500 Os08g0295500 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Expressed gene transposon protein, putative, Ac/Ds sub-class gene taxon:39947 20121019 POC:Pankaj_Jaiswal -RAP-DB Os08g0296900 Os08g0296900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Octicosapeptide/Phox/Bem1p domain containing protein octicosapeptide/Phox/Bem1p, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal +RAP-DB Os08g0296900 Os08g0296900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Tetratricopeptide-like helical domain containing protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0308800 Os08g0308800 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Hypothetical protein Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0311500 Os08g0311500 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Expressed gene Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0311900 Os08g0311900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Expressed gene Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal @@ -2421,7 +2421,7 @@ RAP-DB Os08g0555600 Os08g0555600 PO:0009089 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os08g0556000 Os08g0556000 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A YT521-B-like protein family protein ECT5, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0556200 Os08g0556200 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Dihydroneopterin aldolase dihydroneopterin aldolase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0556900 Os08g0556900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Cysteine proteinase (EC 3422-) vignain precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal -RAP-DB Os08g0557000 Os08g0557000 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Protein-L-isoaspartate O-methyltransferase (EC 21177) (Protein- beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) protein-L-isoaspartate O-methyltransferase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal +RAP-DB Os08g0557000 OsPIMT1 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A L-isoaspartylmethyltransferase 1 gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0558100 Os08g0558100 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Calcium-binding EF-hand domain containing protein EF hand family protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0558700 Os08g0558700 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A Conserved hypothetical protein multiple myeloma tumor-associated protein 2, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal RAP-DB Os08g0558900 Os08g0558900 PO:0009089 DOI:10.1371/journal.pone.0026162 IEP A F1F0-ATPase inhibitor protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal @@ -14897,7 +14897,7 @@ RAP-DB Os08g0151000 Os08g0151000 PO:0025281 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os08g0151800 Os08g0151800 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Pyridine nucleotide-disulphide oxidoreductase, class I family protein monodehydroascorbate reductase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os08g0152500 Os08g0152500 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os08g0152700 Os08g0152700 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Diacylglycerol kinase, catalytic region domain containing protein diacylglycerol kinase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) -RAP-DB Os08g0154900 Os08g0154900 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Oxysterol-binding protein family protein oxysterol-binding protein-related protein 6, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) +RAP-DB Os08g0154900 Os08g0154900 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Pleckstrin homology-type domain containing protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os08g0155100 Os08g0155100 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Major sperm protein domain containing protein MSP domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os08g0156700 Os08g0156700 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A VAP27 MSP domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) RAP-DB Os08g0156900 Os08g0156900 PO:0025281 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A DNA topoisomerase, type II family protein OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0001015)|participates_in(PO:0007130) @@ -17639,7 +17639,7 @@ RAP-DB Os06g0669600 Os06g0669600 PO:0009047 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os06g0676900 Os06g0676900 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Non-protein coding transcript, uncharacterized transcript Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0677000 Os06g0677000 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Patatin family protein PLA IIIA/PLP7, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0678800 Os06g0678800 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Cupredoxin domain containing protein monocopper oxidase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) -RAP-DB Os06g0681300 Os06g0681300 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A PAK-box/P21-Rho-binding domain containing protein RIC10, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) +RAP-DB Os06g0681300 Os06g0681300 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Hypothetical conserved gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0681600 Os06g0681600 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Plant peroxidase family protein peroxidase precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0681700 Os06g0681700 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein solute carrier family 35 member F5, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os06g0683800 Os06g0683800 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Hypothetical protein hypothetical protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) @@ -17853,7 +17853,7 @@ RAP-DB Os08g0237000 Os08g0237000 PO:0009047 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os08g0238600 Os08g0238600 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Endo-1,3;1,4-beta-D-glucanase precursor (EC 321-) Expressed gene gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os08g0239000 Os08g0239000 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Complex 1 LYR protein family protein LYR motif containing protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os08g0248100 Os08g0248100 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase domain containing protein receptor-like protein kinase 2 precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) -RAP-DB Os08g0249100 Os08g0249100 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A UspA domain containing protein ATP binding protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) +RAP-DB Os08g0249100 OsRLCK249 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Receptor-like Cytoplasmic Kinase 249 gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os08g0269500 Os08g0269500 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein retrotransposon protein, putative, SINE subclass, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os08g0269600 Os08g0269600 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A EGF-like domain containing protein retrotransposon protein, putative, SINE subclass, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) RAP-DB Os08g0276000 Os08g0276000 PO:0009047 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Nonaspanin (TM9SF) family protein transmembrane 9 superfamily member, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007010)|participates_in(PO:0007130) @@ -22541,7 +22541,7 @@ RAP-DB Os06g0690600 Os06g0690600 PO:0009009 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os06g0692500 Os06g0692500 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Expressed gene phytosulfokine receptor precursor, putative gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) RAP-DB Os06g0692600 Os06g0692600 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Protein kinase domain containing protein phytosulfokine receptor precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) RAP-DB Os06g0693500 Os06g0693500 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Zn-finger, C2H2 type domain containing protein ZOS6-08 - C2H2 zinc finger protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) -RAP-DB Os06g0695500 Os06g0695500 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peroxidase 16 precursor (EC 11117) (Atperox P16) (ATP22a) peroxidase precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) +RAP-DB Os06g0695500 prx90 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A class III peroxidase 90 gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) RAP-DB Os06g0696500 Os06g0696500 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Xyloglucan endo-transglycosylase precursor glycosyl hydrolases family 16, putative gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) RAP-DB Os06g0698900 Os06g0698900 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Zn-finger, GATA type domain containing protein GATA transcription factor 25, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) RAP-DB Os06g0700000 Os06g0700000 PO:0009009 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Proteinase inhibitor I9, subtilisin propeptide domain containing protein OsSub52 - Putative Subtilisin homologue, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007631)|participates_in(PO:0007042) @@ -26756,7 +26756,7 @@ RAP-DB Os07g0623600 Os07g0623600 PO:0009030 DOI:10.1371/journal.pone.0026162 IE RAP-DB Os07g0680500 Os07g0680500 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Helicase, C-terminal domain containing protein helicase conserved C-terminal domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) RAP-DB Os08g0115200 Os08g0115200 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A IQ calmodulin-binding region domain containing protein IQ calmodulin-binding motif domain containing protein, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) RAP-DB Os08g0145600 Os08g0145600 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Peptidase, trypsin-like serine and cysteine proteases domain containing protein expressed protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) -RAP-DB Os08g0148300 Os08g0148300 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A CLAVATA1 receptor kinase( CLV1)-like protein receptor-like protein kinase 5 precursor, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) +RAP-DB Os08g0148300 Os08g0148300 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Conserved hypothetical protein gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) RAP-DB Os08g0157900 Os08g0157900 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A No apical meristem (NAM) protein domain containing protein no apical meristem protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) RAP-DB Os08g0220400 Os08g0220400 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Pectinesterase family protein pectinesterase, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) RAP-DB Os08g0296600 Os08g0296600 PO:0009030 DOI:10.1371/journal.pone.0026162 IEP isolated_from_germplasm(Nipponbare) A Disease resistance protein family protein NBS-LRR disease resistance protein, putative, expressed gene taxon:39947 20121019 POC:Pankaj_Jaiswal participates_in(PO:0007606)|participates_in(PO:0007130) -- 2.34.1