| 2012-11-19 | miles | species inclusion check boxes now in a table. Revised... | commit | commitdiff | tree | snapshot | 
| 2012-11-16 | preecej | changed support email address from ...@palea to ..... | commit | commitdiff | tree | snapshot | 
| 2012-11-15 | preecej | updated icons for AISO rename | commit | commitdiff | tree | snapshot | 
| 2012-11-09 | naithans | Initial commit of Sushmas rtpjs | commit | commitdiff | tree | snapshot | 
| 2012-11-09 | elserj | Added folder for Sushma | commit | commitdiff | tree | snapshot | 
| 2012-11-08 | preecej | svn path=/; revision=409 | commit | commitdiff | tree | snapshot | 
| 2012-11-08 | preecej | changed from SIA to AISO | commit | commitdiff | tree | snapshot | 
| 2012-11-08 | preecej | svn path=/; revision=407 | commit | commitdiff | tree | snapshot | 
| 2012-11-06 | miles | Species inclusion now working for webpage only. Clear... | commit | commitdiff | tree | snapshot | 
| 2012-11-01 | miles | updated Heatmap.jar to reflect the same color scheme... | commit | commitdiff | tree | snapshot | 
| 2012-10-19 | miles | Species elimination finally working, only from Main... | commit | commitdiff | tree | snapshot | 
| 2012-10-17 | miles | added correctly sized and moving scrollbar | commit | commitdiff | tree | snapshot | 
| 2012-10-11 | miles | svn path=/; revision=402 | commit | commitdiff | tree | snapshot | 
| 2012-10-11 | miles | check boxes no longer disappear after they have been... | commit | commitdiff | tree | snapshot | 
| 2012-10-11 | miles | check boxes for removing species from the heat map | commit | commitdiff | tree | snapshot | 
| 2012-10-11 | miles | species elimination working, must be known before heatm... | commit | commitdiff | tree | snapshot | 
| 2012-10-10 | preecej | Trac #197 and 282 | commit | commitdiff | tree | snapshot | 
| 2012-10-09 | preecej | Removing old copy of SIA project. "Annotation" is the... | commit | commitdiff | tree | snapshot | 
| 2012-10-08 | preecej | Added note about required internet connection | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | svn path=/; revision=395 | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | Changed "apply markup now" icon to running man (avoids... | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | text revisions | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | Revised help doc. Added "beta" to app name. | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | Help URLs revised. | commit | commitdiff | tree | snapshot | 
| 2012-10-05 | preecej | Started revisions on the help doc, pointed at a new... | commit | commitdiff | tree | snapshot | 
| 2012-10-04 | preecej | Revised the clearing of the curator, species, and term... | commit | commitdiff | tree | snapshot | 
| 2012-10-04 | preecej | Close and Save Reminder f(x) implemented. | commit | commitdiff | tree | snapshot | 
| 2012-10-04 | preecej | Tested the Close action. Drafted the Close dialog. | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | Close Action progress. Now just need to build Close... | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | Comment clean-up, changed "Command-W" to "Ctrl-W" on... | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | new application icons | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | Updated image for About dialog | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | Added OS license text and image to About dialog. | commit | commitdiff | tree | snapshot | 
| 2012-10-02 | preecej | License image for open source software designation. | commit | commitdiff | tree | snapshot | 
| 2012-09-28 | preecej | Added a folder to contain the Plant Reactome project... | commit | commitdiff | tree | snapshot | 
| 2012-09-28 | preecej | test svn commits | commit | commitdiff | tree | snapshot | 
| 2012-09-18 | preecej | Two tickets in progress: Trac #149, 188. | commit | commitdiff | tree | snapshot | 
| 2012-08-27 | ahmedi | Test commit | commit | commitdiff | tree | snapshot | 
| 2012-08-15 | miles | Final modifications. Working download link and image... | commit | commitdiff | tree | snapshot | 
| 2012-08-15 | elserj | Add back code to use the heatchart.java method | commit | commitdiff | tree | snapshot | 
| 2012-08-13 | preecej | Changed Kevin McGuinness' affiliation and added a link... | commit | commitdiff | tree | snapshot | 
| 2012-08-13 | miles | Deleted unneeded files | commit | commitdiff | tree | snapshot | 
| 2012-08-13 | miles | Added Web page files | commit | commitdiff | tree | snapshot | 
| 2012-08-09 | miles | Updates for web page compatibility. | commit | commitdiff | tree | snapshot | 
| 2012-07-25 | miles | Added webpage stuff. | commit | commitdiff | tree | snapshot | 
| 2012-07-25 | elserj | Added HeatChart.java and modified it from original... | commit | commitdiff | tree | snapshot | 
| 2012-07-23 | miles | Fully operational image generation, independent of... | commit | commitdiff | tree | snapshot | 
| 2012-07-23 | miles | Working copy with JHeatChart.java. Puts the species... | commit | commitdiff | tree | snapshot | 
| 2012-07-20 | elserj | Fixed empty args error.  Also added code to print actua... | commit | commitdiff | tree | snapshot | 
| 2012-07-19 | miles | Tab Delimited File option fully functional. See tmp... | commit | commitdiff | tree | snapshot | 
| 2012-07-18 | preecej | Added TO (Trait Ontology) web service and db access... | commit | commitdiff | tree | snapshot | 
| 2012-07-17 | miles | Now able to handle more than one gene at a time. | commit | commitdiff | tree | snapshot | 
| 2012-07-17 | miles | Species now unique and alphabetized, geneMaps properly... | commit | commitdiff | tree | snapshot | 
| 2012-07-17 | miles | Trying to move most of workload from java to sql. Hopin... | commit | commitdiff | tree | snapshot | 
| 2012-07-16 | miles | Initial import. | commit | commitdiff | tree | snapshot | 
| 2012-07-14 | preecej | Fixed curr_ontology_type bug in transform_gaf, correctl... | commit | commitdiff | tree | snapshot | 
| 2012-07-13 | preecej | Added "Assigned By" field | commit | commitdiff | tree | snapshot | 
| 2012-07-13 | preecej | Can now handle "Assigned By" (GAF column 15); fixed... | commit | commitdiff | tree | snapshot | 
| 2012-07-09 | miles | initializing miles van de wetering's file | commit | commitdiff | tree | snapshot | 
| 2012-07-07 | preecej | Updated to work for Vitis vinifera (grape) imports... | commit | commitdiff | tree | snapshot | 
| 2012-07-06 | preecej | modified to match non-Mac updates to config files | commit | commitdiff | tree | snapshot | 
| 2012-07-06 | preecej | Trac #157: closed | commit | commitdiff | tree | snapshot | 
| 2012-07-04 | preecej | [Trac tickets] | commit | commitdiff | tree | snapshot | 
| 2012-07-04 | preecej | Memory disposal work (when opening a new file) in progress. | commit | commitdiff | tree | snapshot | 
| 2012-06-27 | preecej | Changed app name to SIA where necessary, re-added Exit... | commit | commitdiff | tree | snapshot | 
| 2012-06-12 | athreyab | remove annotated_keyword_listid column | commit | commitdiff | tree | snapshot | 
| 2012-06-11 | athreyab | interaction db stuff | commit | commitdiff | tree | snapshot | 
| 2012-06-11 | athreyab | renaming image_annotation to image_annotation_db | commit | commitdiff | tree | snapshot | 
| 2012-06-11 | athreyab | image annotation database stuff | commit | commitdiff | tree | snapshot | 
| 2012-06-07 | preecej | sew together SSR data from 3 different sample transcrip... | commit | commitdiff | tree | snapshot | 
| 2012-06-06 | preecej | svn path=/; revision=344 | commit | commitdiff | tree | snapshot | 
| 2012-06-05 | athreyab | documentation | commit | commitdiff | tree | snapshot | 
| 2012-06-05 | lingutln | Coordinates saving functionality and some UI alignments... | commit | commitdiff | tree | snapshot | 
| 2012-05-31 | lingutln | Saving annotated images functionality and UI changes... | commit | commitdiff | tree | snapshot | 
| 2012-05-31 | lingutln | Data storage functionality completed. Done by Nikhil. | commit | commitdiff | tree | snapshot | 
| 2012-05-31 | preecej | Added parameters to the term search web service call... | commit | commitdiff | tree | snapshot | 
| 2012-05-26 | preecej | term detail web service fix, and some temp URL testing... | commit | commitdiff | tree | snapshot | 
| 2012-05-26 | preecej | Moved term detail synonyms to separate table; more... | commit | commitdiff | tree | snapshot | 
| 2012-05-24 | lingutln | Data retrieval functionality completed and using ontolo... | commit | commitdiff | tree | snapshot | 
| 2012-05-23 | preecej | UI and term search web service adjustments | commit | commitdiff | tree | snapshot | 
| 2012-05-23 | preecej | Simple gene and expression data mapping scripts for... | commit | commitdiff | tree | snapshot | 
| 2012-05-22 | lingutln | Modified some UI functionalities and Species terms... | commit | commitdiff | tree | snapshot | 
| 2012-05-21 | lingutln | Data retrieval(Fully done). Data storage(except saving... | commit | commitdiff | tree | snapshot | 
| 2012-05-19 | athreyab | remove first \1 | commit | commitdiff | tree | snapshot | 
| 2012-05-16 | preecej | PO web service term detail call complete; still needs... | commit | commitdiff | tree | snapshot | 
| 2012-05-15 | preecej | in progress: ontologyTerm refactoring associated with... | commit | commitdiff | tree | snapshot | 
| 2012-05-15 | preecej | in progress: term details web service call | commit | commitdiff | tree | snapshot | 
| 2012-05-01 | athreyab | pair/singleton script update | commit | commitdiff | tree | snapshot | 
| 2012-05-01 | athreyab | bash script for creating singleton/pair | commit | commitdiff | tree | snapshot | 
| 2012-04-16 | athreyab | illumina parse scripts | commit | commitdiff | tree | snapshot | 
| 2012-04-12 | preecej | Changed PO web service term_search URL: removed branch... | commit | commitdiff | tree | snapshot | 
| 2012-04-11 | preecej | Moved permanently to /plantontology repo (/html/services/) | commit | commitdiff | tree | snapshot | 
| 2012-04-11 | preecej | changed PO aspect (branch) reference to | commit | commitdiff | tree | snapshot | 
| 2012-04-11 | preecej | Made this service environment-independent. Now refers... | commit | commitdiff | tree | snapshot | 
| 2012-04-11 | preecej | Updated "plant growth and development stage" to "plant... | commit | commitdiff | tree | snapshot | 
| 2012-04-10 | lingutln | Resolved refactoring of segment label. Done by Nikhil. | commit | commitdiff | tree | snapshot | 
| 2012-04-09 | lingutln | svn path=/; revision=318 | commit | commitdiff | tree | snapshot | 
| 2012-04-09 | lingutln | Base64 Decoding for UBio webservice. Done by Nikhil. | commit | commitdiff | tree | snapshot | 
| 2012-04-09 | lingutln | Implemented Ubio Web service integration.(yet to comple... | commit | commitdiff | tree | snapshot | 
| 2012-04-04 | preecej | Adding an html_mocks folder for design mocks, first... | commit | commitdiff | tree | snapshot | 
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