Hello!

To see the file structure, click on "tree".

Note that updates take place every 10 minutes, commits may not be seen immediately.
associations/.git
2021-11-04 elserjReplace ',' with '|' in synonyms and remove extra chara...
2021-10-29 elserjConvert bad characters to ASCII. Confirmed on arabidops...
2021-10-29 elserjRemove extra character that was causing the file to...
2021-10-26 elserjRemove space in reference list
2021-10-26 elserjRemove empty lines
2021-10-25 elserjFix all To germplasm to have correct date format
2021-10-25 elserjFix missing column and empty rows
2021-10-25 elserjRemove unneccessary header comment and correct column...
2021-10-25 elserjRemoved the wrong tab to fix extra columns. This should...
2021-10-25 elserjFix missing column in Sorghum files
2021-10-25 elserjFix extra columns on commented lines
2021-10-25 elserjAdd missing last 2 columns for gaf 2.0 format
2020-08-20 elserjWrong db source
2020-08-19 elserjAdd ensembl IDs as synonyms for Sorghum
2020-08-18 elserjUpdate TAIR annotations to latest available
2020-08-13 elserjChange Sorghum ids from ensembl to Sobic and dbxref...
2020-07-14 elserjAdd new go_ortholog files
2020-07-14 elserjRemove old version of go_ortholog files
2020-07-13 elserjUpdate all dbxrefs for iprscan files
2020-05-07 elserjFix line endings and replace aspect with correct one
2020-05-07 cooperlFixing line endings
2020-05-06 cooperlChanged the ontology aspect from S to A
2020-05-05 cooperlMoving AGI_LocusCode to replace TAIR in column 1 to...
2020-05-05 cooperlAdded AGI_LocusCode: to names in column 2 so the links...
2020-05-05 cooperlUpdating TAIR annotations
2020-05-05 cooperlUpdating TAIR annotations
2020-04-30 elserjFix gene ids to not have "." or ".1"
2020-02-19 elserjAdd new GO associations for Solanum lycopersicum from...
2020-02-19 elserjUpdate go Arabidopsis annotations from TAIR
2020-02-03 elserjUpdated iprscan GO annotations and added new species
2019-03-14 cooperl fixed evidence code
2019-03-14 cooperlFixed typo
2019-03-14 cooperlREMOVING DUPLICATED LINES
2019-03-14 cooperlFixing a few more rice QTL annotations
2019-03-14 cooperlFixed duplicate refs on AQEE001
2019-03-13 cooperlFixing annotations on Gramene Oryza QTLs
2019-03-12 cooperlCombining refs to remove duplicaetd lines
2019-03-12 cooperlFixed annotations, removed duplicated lines
2019-03-12 cooperlMoved annotations from seed to caryopsis fruit
2019-03-12 cooperlRevising annotations of rice QTLs- moved from seed...
2019-02-21 cooperlReplaced annotations on seed shape (TO:0000484), moved...
2019-02-21 cooperlReplaced annotations on seed thickness (TO:0000304...
2019-02-21 cooperlReplaced annotations on Seed width (TO:0000149), moved...
2019-02-20 cooperlMoved annotations from seed length (TO:0000146) to...
2019-02-20 cooperlMoved annotations from seed length (TO:0000146) to...
2019-02-20 cooperlUpdating annotations to new grain color trait for Zizan...
2018-10-04 cooperlMoved Sorghum GRIN germplasm file out of test folder...
2018-10-04 cooperlRemoved the "(SDM) from column 16 in 37 lines
2018-10-04 cooperlReplaced "has_exact_phenotype" with "has_phenotype_scor...
2018-09-11 elserjRename files to proper name rather than synonym. Close...
2018-09-07 cooperlFixed relation in col 16 from 'in_presence_of' to ...
2018-08-14 cooperlMoved annotations from average grain weight TO:0000589...
2018-08-14 elserjReplace all instances of TO:0000181 with TO:0000919...
2018-07-24 cooperlFixing annotations to deprecated TO:0000637- replaced...
2018-06-27 meieraFixed issue Missing species name- Zea diploperennis...
2018-05-14 elserjAdd new Zea mays v4 annotations
2018-05-09 elserjAdd new Prunus yedoensis var. nudiflora file
2018-04-05 meieratypo
2018-04-05 meierachanged seed shattering to legume fruit shattering...
2018-03-19 elserjAdd missing tabs to make gaf 2.0
2018-03-19 cooperlAdding oat file
2018-03-16 cooperlThis file has been replaced by all the individual files...
2018-03-16 cooperlnew file of rice annotations
2018-03-16 cooperlFixed typo
2018-03-15 elserjFile was in utf-8 with BOM instead of ascii format...
2018-03-15 elserjRename file so it doesn't have a space in filename
2018-03-15 elserjAdd extra tabs and fix a few lines that had tabs in...
2018-03-15 elserjExtra tabs to make gaf 2.0
2018-03-15 elserjExtra tabs to make gaf 2.0
2018-03-15 elserjAdd extra tabs to make gaf 2.0
2018-03-15 elserjAdd missing tabs to end of lines to make gaf 2.0 format
2018-03-15 elserjFix extra tabs on line 282 and add tabs to make it...
2018-03-14 cooperlice qtl annotaions for PECO
2018-03-14 cooperlGramene QTL annotaiton files by species
2018-03-14 cooperlNew file of Cenchrus_americanus QTLs
2018-03-14 cooperlZea mays annotations for QTLs
2018-03-14 cooperlFixed references and moved non-Oryza annotations to...
2018-01-26 elserjRemove accidental tabs from header line
2018-01-26 elserjFix improper GRIMS, IRIC and GRIN references to actual...
2018-01-26 elserjReplace column 4 text with blank, wasn't supposed to...
2018-01-10 meieraremoved spaces from column16
2018-01-10 meieraadded a test file from Samara GRIN for Sorghum
2018-01-10 elserjFix missing ":" and remove incorrect pulication xrefs
2018-01-08 cooperlMoved vigor traits to TO:0000133 plant vigor trait
2018-01-05 elserjFix typo debranding -> debranching
2017-11-07 elserjReplace EO: namespace with PECO: in remaining files
2017-11-07 elserjReplace all filenames from EO to PECO
2017-11-07 cooperlUpdated EO namespace to PECO
2017-10-26 meieraadded targetp test gaf
2017-10-24 meieraadded test predotar GAF for rice genes
2017-10-11 elserjFix typo in ev code
2017-10-11 elserjFix capitalization in ev code for one line
2017-08-04 elserjConvert older gaf 1.0 files to gaf 2.0
2017-08-02 elserjFix spacing in gaf-version header line
2017-08-01 elserjReplace "Not available" in column 3 with column 2 entry.
2017-02-13 elserjFix incorrect assigned by for one annotation. Was...
2017-02-11 elserjStill messed up tabs. These ones loaded so should...
2017-02-11 elserjOops, also missed a tab char on these as well.
2017-02-10 elserjOops, missing tab for last column
2017-02-10 elserjFix all incorrect aspects. All aspects in go_ortholog_...
next