| 2011-07-29 |
preecej | Completed GAF import transformation script for scale... |
commit | commitdiff | tree | snapshot |
| 2011-07-29 |
preecej | Began XML doc write using XML::Writer |
commit | commitdiff | tree | snapshot |
| 2011-07-28 |
preecej | Added commentary amd config file read-in |
commit | commitdiff | tree | snapshot |
| 2011-07-28 |
preecej | Includes Mamatha's first updates to opt args |
commit | commitdiff | tree | snapshot |
| 2011-07-28 |
preecej | Completed data read-in of GAF file (paw_TransformForImp... |
commit | commitdiff | tree | snapshot |
| 2011-07-26 |
preecej | New script for directly modifying PathVisio GPML files... |
commit | commitdiff | tree | snapshot |
| 2011-07-25 |
preecej | Began breaking out GAF from generic CSV, tab format. |
commit | commitdiff | tree | snapshot |
| 2011-07-23 |
preecej | Started adding GAF format input option to Rev 0.2 |
commit | commitdiff | tree | snapshot |
| 2011-07-19 |
preecej | Minor query updates to better handle obsolete terms |
commit | commitdiff | tree | snapshot |
| 2011-07-15 |
preecej | Added a max return count of 50, filtered out OBSOLETE... |
commit | commitdiff | tree | snapshot |
| 2011-07-15 |
preecej | Modified queries to provide more fields from the AmiGO db. |
commit | commitdiff | tree | snapshot |
| 2011-07-13 |
preecej | new RESTful web service for the PO site and for the... |
commit | commitdiff | tree | snapshot |
| 2011-07-09 |
elserj | Update for new fasta files |
commit | commitdiff | tree | snapshot |
| 2011-07-08 |
preecej | Stashing local copies of LocalSettings.php for safekeeping |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
elserj | works now, at least for Spanish |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
elserj | Moved to DbiFloret::dbconnect for db connection, and... |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
elserj | Added new species |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
elserj | Switch to using dbconnect method from DbiFloret module |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
elserj | Fixed so that backspace works |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
preecej | xml file-generation debug |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
preecej | Changed name of import file from PS_* to paw_* |
commit | commitdiff | tree | snapshot |
| 2011-07-06 |
preecej | New version for dev.planteome.org. No changes yet. |
commit | commitdiff | tree | snapshot |
| 2011-07-01 |
preecej | More wiki source code. |
commit | commitdiff | tree | snapshot |
| 2011-07-01 |
preecej | Began storage of wiki forms and templates. |
commit | commitdiff | tree | snapshot |
| 2011-06-05 |
elserj | First version of translation insertion script, not... |
commit | commitdiff | tree | snapshot |
| 2011-06-02 |
preecej | Completed first working version. |
commit | commitdiff | tree | snapshot |
| 2011-05-28 |
preecej | Added more provenance xml |
commit | commitdiff | tree | snapshot |
| 2011-05-28 |
preecej | Added input data viewing, started xml doc construction |
commit | commitdiff | tree | snapshot |
| 2011-05-27 |
preecej | Added input reads and tests |
commit | commitdiff | tree | snapshot |
| 2011-05-26 |
preecej | Initial pseudo-coding of PS import script |
commit | commitdiff | tree | snapshot |
| 2011-05-25 |
preecej | svn path=/; revision=100 |
commit | commitdiff | tree | snapshot |
| 2011-05-24 |
preecej | Added initial copy of DataTransfer extension, with... |
commit | commitdiff | tree | snapshot |
| 2011-05-23 |
preecej | svn path=/; revision=98 |
commit | commitdiff | tree | snapshot |
| 2011-05-23 |
preecej | svn path=/; revision=97 |
commit | commitdiff | tree | snapshot |
| 2011-05-23 |
preecej | svn path=/; revision=96 |
commit | commitdiff | tree | snapshot |
| 2011-05-23 |
preecej | svn path=/; revision=95 |
commit | commitdiff | tree | snapshot |
| 2011-05-23 |
preecej | Refreshed versions of LocalSettings.php and NCBI_eDocSu... |
commit | commitdiff | tree | snapshot |
| 2011-05-04 |
elserj | Add check for .txt assoc files |
commit | commitdiff | tree | snapshot |
| 2011-05-04 |
elserj | Add file to create a fasta protein file from a list... |
commit | commitdiff | tree | snapshot |
| 2011-04-19 |
preecej | Added step-interaction data type and format converter... |
commit | commitdiff | tree | snapshot |
| 2011-04-06 |
elserj | Changed Zea mays to use the header from maizesequence.org |
commit | commitdiff | tree | snapshot |
| 2011-03-10 |
elserj | Added script that will take the list of protein coding... |
commit | commitdiff | tree | snapshot |
| 2011-02-14 |
preecej | First iteration: Determine mapped ChEBI molecules liste... |
commit | commitdiff | tree | snapshot |
| 2011-02-09 |
preecej | temp script for correcting a curatorial data problem... |
commit | commitdiff | tree | snapshot |
| 2011-02-07 |
preecej | removed rice references to make generic for other species |
commit | commitdiff | tree | snapshot |
| 2011-01-28 |
elserj | Add species |
commit | commitdiff | tree | snapshot |
| 2011-01-28 |
elserj | Add citrus, eucalyptus and apple to gene detection |
commit | commitdiff | tree | snapshot |
| 2011-01-08 |
elserj | expanded to .fa as well as .fasta files. Also, seperat... |
commit | commitdiff | tree | snapshot |
| 2011-01-08 |
elserj | Script to be used for detection of obsolete terms in... |
commit | commitdiff | tree | snapshot |
| 2010-10-29 |
elserj | Script to find some stats about a species supercluster... |
commit | commitdiff | tree | snapshot |
| 2010-10-27 |
preecej | moved SMW extension declarations to fix autocompletion... |
commit | commitdiff | tree | snapshot |
| 2010-10-27 |
preecej | added prototyping dir for backup and versioning |
commit | commitdiff | tree | snapshot |
| 2010-10-27 |
preecej | renamed www to mac_www and added folder for semantic... |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Fix location of find_species.pl |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Fixed gene detection in C.elegans |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Try that again |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Another typo |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Fixed typos |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Fixed location of find_species.pl check |
commit | commitdiff | tree | snapshot |
| 2010-10-22 |
elserj | Added new species for Kathryn Bushley |
commit | commitdiff | tree | snapshot |
| 2010-10-21 |
preecej | - fixed bug that ignored multiple reactome id's in... |
commit | commitdiff | tree | snapshot |
| 2010-10-19 |
preecej | laptop svn connectivity test |
commit | commitdiff | tree | snapshot |
| 2010-10-18 |
preecej | added comments to test move of svn folder |
commit | commitdiff | tree | snapshot |
| 2010-10-14 |
elserj | Added script to take hal tree output and replace 2... |
commit | commitdiff | tree | snapshot |
| 2010-10-13 |
preecej | Added system call to sort the results file and remove... |
commit | commitdiff | tree | snapshot |
| 2010-10-12 |
preecej | Added code for all mappings, statistical counters,... |
commit | commitdiff | tree | snapshot |
| 2010-10-11 |
preecej | Removed unnecessary backups from laptop |
commit | commitdiff | tree | snapshot |
| 2010-10-11 |
preecej | Switched from Bio::OntologyIO module to GO::Parser... |
commit | commitdiff | tree | snapshot |
| 2010-10-09 |
preecej | copying |
commit | commitdiff | tree | snapshot |
| 2010-10-09 |
preecej | wrote outline for sub perform_map(); successfully added... |
commit | commitdiff | tree | snapshot |
| 2010-10-08 |
preecej | hash loads of CAS, LIGAND, RiceCyc |
commit | commitdiff | tree | snapshot |
| 2010-10-08 |
preecej | added individual hashes for each input type; attempted... |
commit | commitdiff | tree | snapshot |
| 2010-10-07 |
preecej | imported Bio::OntologyIO and ran parser test on CHEBI... |
commit | commitdiff | tree | snapshot |
| 2010-10-07 |
preecej | Basic stub-out of reactome::chebi mapping script. |
commit | commitdiff | tree | snapshot |
| 2010-10-06 |
preecej | Reactome::CHEBI mapping project |
commit | commitdiff | tree | snapshot |
| 2010-10-02 |
elserj | Fix require line to check for location of find_species.pl |
commit | commitdiff | tree | snapshot |
| 2010-10-02 |
elserj | Fix require line to check for location of find_species.pl |
commit | commitdiff | tree | snapshot |
| 2010-09-27 |
elserj | Fixed non-unique gene-id detection. Previous version... |
commit | commitdiff | tree | snapshot |
| 2010-09-27 |
elserj | Added detection of non-unique gene-ids |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Fix gene header scope error and remove > symbol from... |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Added species db loading script to svn. This script... |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Took out find_gene lookups as this will now be handled... |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Change filename split so that errant dashes won't cause... |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Moved the "clusters" table select statement outside... |
commit | commitdiff | tree | snapshot |
| 2010-09-23 |
elserj | Fix Pediculus gene identification |
commit | commitdiff | tree | snapshot |
| 2010-09-22 |
elserj | Fix whitespace and remove old comments |
commit | commitdiff | tree | snapshot |
| 2010-09-22 |
elserj | Exit script if wrong number of arguments is found |
commit | commitdiff | tree | snapshot |
| 2010-09-21 |
elserj | Run fasta_header_fix.pl on fasta files before submittin... |
commit | commitdiff | tree | snapshot |
| 2010-09-21 |
elserj | Added usage comment if wrong number of arguments |
commit | commitdiff | tree | snapshot |
| 2010-09-21 |
elserj | Modified to take input and output files as arguments... |
commit | commitdiff | tree | snapshot |
| 2010-09-21 |
elserj | Use subroutine to get species array and cleaned up... |
commit | commitdiff | tree | snapshot |
| 2010-09-21 |
elserj | Added subroutine to output all species in an array... |
commit | commitdiff | tree | snapshot |
| 2010-09-17 |
elserj | Fixed Human, Mouse, and Sacc_cerevisiae gene id detection |
commit | commitdiff | tree | snapshot |
| 2010-09-17 |
elserj | Fixes the gene headers in the fasta files so that they... |
commit | commitdiff | tree | snapshot |
| 2010-09-16 |
elserj | took out print line in cucumber |
commit | commitdiff | tree | snapshot |
| 2010-09-16 |
elserj | Added --new option for creating a new version of the... |
commit | commitdiff | tree | snapshot |
| 2010-09-14 |
preecej | Backup Location for Mac web contents under /data/www |
commit | commitdiff | tree | snapshot |
| 2010-09-08 |
elserj | Changed the split for C.elegans since the tab in the... |
commit | commitdiff | tree | snapshot |
| 2010-09-08 |
elserj | Added script to loop through and test fasta files via... |
commit | commitdiff | tree | snapshot |
| 2010-09-07 |
elserj | Script no longer needed since we don't use CSHL cvs... |
commit | commitdiff | tree | snapshot |
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projects / old-jaiswallab-svn / .git / shortlog