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associations/.git
2016-12-29 meieraAdded all IRRI traits, version 1.0 for testing
2016-12-20 meieraadded a new IRRI_GRIMS test association file.
2016-10-17 meierafixed NA problem, and taxon change from GRIN to NCBI
2016-10-14 meierafixed errors
2016-10-14 meieraAdded new GRIN maize scrape from Samara for testing.
2016-09-29 cooperlReplaced deprecated EO term pest/pathogen/animal/plant...
2016-09-29 cooperlReplaced deprecated EO term pest/pathogen/animal/plant...
2016-09-03 cooperlFixed annotations for grain number QTLs in rice: Change...
2016-09-01 elserjReplace Ensembl_Plants with EnsemblPlants to match...
2016-08-31 cooperlUpdated the reference used in the SGN germplasm files...
2016-08-30 meieraChanged database name in column 1 from cosmoss to cosmo...
2016-08-30 elserjRemove bad references
2016-08-30 meieraChanged MaizeGDB: to MaizeGDB_REF: in column 6 to allow...
2016-08-26 elserjcontinued fixes in evidence codes
2016-08-26 elserjOops, should be changed to IMP, not ISM
2016-08-26 elserjChange evidence code from "SM" to "ISM". Assume was...
2016-08-26 elserjChange evidence code from "NOT" to "IC". Assume was...
2016-08-26 elserjRemove unnecessary extra info from colum 7 on a couple...
2016-08-25 cooperlChanged maizeGDB to MaizeGDB to be consistent
2016-08-25 cooperlFixing filenames for consistency
2016-08-25 cooperlFixing filenames for consistency
2016-08-25 elserjReplace GR_gene with gene to be consistent in object...
2016-08-25 elserjRemove extra characters at end of line
2016-08-22 cooperlFixed DB:Curator_Name for consistency
2016-08-22 cooperlFixed Curator names for consistency
2016-08-19 elserjMove eo_diversity files to sub folder, they are not...
2016-08-19 cooperlFixed database names to be consistent
2016-08-19 elserjChange case of filename for consistency
2016-08-19 cooperlFixing filenames for consistency
2016-08-19 cooperlFixing filenames for consistency. Moved file with...
2016-08-19 cooperlFixed missing column tab space.
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlMoving the CO cassava annotation file back to the test...
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 cooperlng filenames for consistency
2016-08-18 cooperlChanged database name from GR to Gramene
2016-08-18 cooperlChanged database name from GR to Gramene
2016-08-18 cooperlRenaming merged file
2016-08-18 cooperlCombine the anatomy and growth versions of this file...
2016-08-18 cooperlChanged database name from GR to Gramene
2016-08-18 cooperlFixed Gramene gene format - should be GR:#######
2016-08-18 cooperlFixed Gramene gene format - should be GR:#######
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 elserjRun dos2unix to fix weird line endings
2016-08-18 cooperlFixed DB:Curator_Name for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperliFixing filenames for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlFixing filenames for consistency
2016-08-18 cooperlChanged object type from transcript to mRNA
2016-08-17 meieraremoved individual trait files. These have been combin...
2016-08-17 meieraconcatenated all IRRI3K OryzaSNP assocication files...
2016-08-17 elserjCombine all anatomy and growth SGN files, rename to...
2016-08-17 elserjChange all references of genemodel back to gene_model...
2016-08-17 elserjFix wrong column 10. Had genemodel rather then the...
2016-08-17 cooperlFixing filename to be consistent with the file contents.
2016-08-17 elserjFix missing dash in header
2016-08-17 elserjFix missing column 10 by inputting column 3
2016-08-16 cooperlRenamed po_growth_gene_model_li_zea_mays.assoc to po_gr...
2016-08-16 cooperlRemoved extraneous dashes and Fixed spelling of gene...
2016-08-16 cooperlFixed spelling of gene model 'gene_model >> genemodel...
2016-08-16 cooperlRenamed po_anatomy_gene_model_li_zea_mays.assoc to...
2016-08-16 cooperlFixed spelling of genemodel, to be consistent and...
2016-08-16 elserjReplace empty column 10 with gene ID from column 3
2016-08-16 cooperlFixed the dbxref to MaizeGDB references to work with...
2016-08-16 cooperlFixed the dbxref to MaizeGDB references to work with...
2016-08-16 elserjFix missing columns.
2016-08-12 elserjTry againt at filtering out duplicate lines. Use pipe...
2016-08-09 elserjReplace all ortholog GO annotation files so that lines...
2016-06-10 meieraAdded back all the OryzaSNP.assoc files without special...
2016-06-10 meieraRemoved old oryzasnp assoc files. These will be replac...
2016-06-10 meieraFixed to remove spaces in the ID column
2016-06-10 meieraAdded traits from OryzaSNP database.
2016-04-05 meieramodified test file for further testing
2016-04-05 meieraa test of columns 3 and 10, for display purposes.
2016-03-23 meieraFirst try for the automatically generated GRIMS databas...
2016-03-17 cooperlFixed typo in the GR_REF columns.
2016-03-17 cooperlRevised annotations to TO:0000079, with new terms for...
2016-03-09 elserjFix extra tab character in column 4 and add header...
2016-03-09 elserjAdd test IRRI assoc files from Austin
2016-02-24 elserjReplace all object types (column 12) of Gene with gene...
2016-02-24 elserjChange Protein to protein in object types (column 12...
2016-01-27 elserjFilter out duplicate lines
2016-01-08 elserjFix tab issues
2016-01-08 meierafixed Gramene database numbers, so links will work.
2016-01-08 elserjMove to_diversity files out of main folder as they...
2016-01-08 elserjAdd files created from iprscan
2016-01-08 cooperlRevised the ontology aspect from 'S' to 'A'
2016-01-08 elserjChange all "assigned by" for Jaiswal_group and jaiswall...
2016-01-08 cooperlRevised the ontology aspect from 'N' to 'P'
2016-01-07 elserjClean up go-associations folder. Move old gramene...
2016-01-07 meierachanged object name (column 10) to be the germplasm...
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