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old-jaiswallab-svn/.git
2025-02-21 Justin ElserUpdate test_file main origin/HEAD origin/main commit | commitdiff | tree | snapshot
2024-12-11 Justin ElserUpdate test_file commit | commitdiff | tree | snapshot
2024-03-07 elserjTesting with new server commit | commitdiff | tree | snapshot
2024-02-23 elserjAdd fasta split by header script commit | commitdiff | tree | snapshot
2023-02-03 elserjTesting subversion version on server commit | commitdiff | tree | snapshot
2022-07-11 elserjTest commit | commitdiff | tree | snapshot
2022-05-16 elserjTest with new apache commit | commitdiff | tree | snapshot
2022-05-04 elserjAdd Cornus florida commit | commitdiff | tree | snapshot
2021-04-21 elserjAdd ability to do 6 (won't create diagram) commit | commitdiff | tree | snapshot
2020-09-16 elserjModify trans_filter so that Saliva_hispanica is not... commit | commitdiff | tree | snapshot
2020-05-07 elserjFix the species printing in output to not have undersco... commit | commitdiff | tree | snapshot
2020-05-07 elserjAdd efficient reverse grep script. Works much better... commit | commitdiff | tree | snapshot
2020-04-30 elserjAdd db handler for 6 species, will not draw venn diagra... commit | commitdiff | tree | snapshot
2020-04-29 elserjGeneralize it to take in species_array from a file... commit | commitdiff | tree | snapshot
2020-04-01 elserjAdd Sesame commit | commitdiff | tree | snapshot
2020-03-09 elserjTest with new server install commit | commitdiff | tree | snapshot
2020-02-19 elserjStill too many AGI_Locuscode commit | commitdiff | tree | snapshot
2020-02-19 elserjOops, too many AGI_Locuscodes commit | commitdiff | tree | snapshot
2020-02-19 elserjAdd duplicate association checker commit | commitdiff | tree | snapshot
2020-02-19 elserjFix species lookup commit | commitdiff | tree | snapshot
2020-02-19 elserjMissed bracket commit | commitdiff | tree | snapshot
2020-02-19 elserjAdd script to generate ortholog association files from... commit | commitdiff | tree | snapshot
2019-08-28 preecejstill used as of slice 19 commit | commitdiff | tree | snapshot
2019-08-26 elserjChange to using isoform_info from protein_sequences... commit | commitdiff | tree | snapshot
2019-08-25 elserjUpdate to include canonical transcript counts when... commit | commitdiff | tree | snapshot
2019-05-14 elserjFix couple of entries for taxons commit | commitdiff | tree | snapshot
2019-05-14 elserjScript to generate fasta_taxon_mapping.txt file for... commit | commitdiff | tree | snapshot
2019-03-08 elserjFix O. sativa Aus kasalath commit | commitdiff | tree | snapshot
2019-03-01 elserjAdd dbconnect_local subroutine commit | commitdiff | tree | snapshot
2019-03-01 elserjAdd dot (.) to regex so that fasta files with them... commit | commitdiff | tree | snapshot
2019-03-01 elserjAdd new species and subroutines to use for common mart... commit | commitdiff | tree | snapshot
2019-03-01 elserjNew Zea mays genes have additional padding 0 in transcr... commit | commitdiff | tree | snapshot
2018-03-27 elserjFix typo commit | commitdiff | tree | snapshot
2018-03-27 elserjFix broken synonyms inserts commit | commitdiff | tree | snapshot
2017-04-21 elserjAdd script that will look for known isoform patterns... commit | commitdiff | tree | snapshot
2016-12-28 elserjAdd more beavers commit | commitdiff | tree | snapshot
2016-12-23 elserjAdd more beaver commit | commitdiff | tree | snapshot
2016-12-09 elserjRemove deprecated TYPE from sql table creation commit | commitdiff | tree | snapshot
2016-12-09 elserjAdd weighted version of supercluster program commit | commitdiff | tree | snapshot
2016-12-06 elserjAdd beaver no-isoforms commit | commitdiff | tree | snapshot
2016-12-01 elserjFix a couple of typos commit | commitdiff | tree | snapshot
2016-12-01 elserjFix Mustela putorius sub species commit | commitdiff | tree | snapshot
2016-12-01 elserjAdd new mammal species commit | commitdiff | tree | snapshot
2016-11-10 elserjAdd aiso xml parsing script. Runs over zip files in... commit | commitdiff | tree | snapshot
2016-10-18 elserjAdd Gossypium hirsutum commit | commitdiff | tree | snapshot
2016-03-23 preecejnow handles direct RAP::UniProt mapping for Ensembl... commit | commitdiff | tree | snapshot
2016-03-10 elserjInput species order no longer matters. Added extra... commit | commitdiff | tree | snapshot
2015-12-28 elserjAdded taxon lookup table commit | commitdiff | tree | snapshot
2015-12-03 elserjFixed all bugs and also now outputs the lines to a... commit | commitdiff | tree | snapshot
2015-12-02 elserjRemove unneeded variable that was there from testing commit | commitdiff | tree | snapshot
2015-12-02 elserjFound bug in loop over file 2 hash. Was counting some... commit | commitdiff | tree | snapshot
2015-12-02 elserjInitial version of SNP venn statistics script commit | commitdiff | tree | snapshot
2015-10-20 elserjFix spelling of Arachis duranensis and add two Salvia... commit | commitdiff | tree | snapshot
2015-10-20 elserjAdd check to see if table exists, and skip ahead if... commit | commitdiff | tree | snapshot
2015-10-08 elserjAdded new bean species, Arachis_duramensis, Arachis_ipa... commit | commitdiff | tree | snapshot
2015-09-23 elserjScript that will generate the tabulated cluster gene... commit | commitdiff | tree | snapshot
2015-09-04 elserjTook out _longest_ from file name, don't really need... commit | commitdiff | tree | snapshot
2015-09-04 elserjAdded script that takes a species list and copies only... commit | commitdiff | tree | snapshot
2015-08-28 elserjAdded Kalanchoe laxiflora commit | commitdiff | tree | snapshot
2015-05-28 elserjAdded section to parse OBO files in addition to assoc... commit | commitdiff | tree | snapshot
2015-05-22 elserjAdded script that parses NCBI taxonomy.dat file and... commit | commitdiff | tree | snapshot
2015-05-22 elserjTesting commit | commitdiff | tree | snapshot
2015-05-14 elserjTesting commit | commitdiff | tree | snapshot
2015-05-14 elserjTesting commit | commitdiff | tree | snapshot
2015-05-14 elserjRemove test directory commit | commitdiff | tree | snapshot
2015-05-14 elserjTesting write access commit | commitdiff | tree | snapshot
2015-05-14 elserjAdded folder for Chris's temperature logger commit | commitdiff | tree | snapshot
2015-04-27 elserjNew script that creates a fasta file with no isoforms... commit | commitdiff | tree | snapshot
2015-02-20 elserjFix Ectocarpus field separator commit | commitdiff | tree | snapshot
2015-02-19 elserjScript that will use supercluster table to generate... commit | commitdiff | tree | snapshot
2015-02-19 albaderupdated assembly scripts $ test commit | commitdiff | tree | snapshot
2015-02-19 albaderfull assembly script-Chia commit | commitdiff | tree | snapshot
2015-02-18 albadertest comment commit | commitdiff | tree | snapshot
2015-02-18 albaderadding my first shell scripts for chia (round 1) commit | commitdiff | tree | snapshot
2015-02-18 albadermy new Personnel folder for holding scripts commit | commitdiff | tree | snapshot
2015-02-17 elserjAdd progress indicator commit | commitdiff | tree | snapshot
2015-02-17 elserjAdd section that skips T.cacao transcripts commit | commitdiff | tree | snapshot
2015-02-17 elserjAdded species hash list to check against and will only... commit | commitdiff | tree | snapshot
2015-02-16 elserjFix monococcum field separators commit | commitdiff | tree | snapshot
2015-02-16 elserjT.cacao genes <=> symbols commit | commitdiff | tree | snapshot
2015-02-16 elserjFix Cannabis field seperator commit | commitdiff | tree | snapshot
2015-02-16 elserjScript that can fix InParanoid sqltable files that... commit | commitdiff | tree | snapshot
2015-02-16 elserjFix incorrect separator for T.cacao commit | commitdiff | tree | snapshot
2015-02-16 elserjFix a couple more incorrect gene names commit | commitdiff | tree | snapshot
2015-02-16 elserjFix broken synonyms for Glycine max commit | commitdiff | tree | snapshot
2015-02-16 elserjFix incorrect C.elegans gene names commit | commitdiff | tree | snapshot
2015-02-11 elserjFix misspelling commit | commitdiff | tree | snapshot
2015-02-11 elserjFix misspellings and shorten B.sylvaticum.Corvallis... commit | commitdiff | tree | snapshot
2015-02-06 elserjShorten B.sylvaticum.Corvallis name so that database... commit | commitdiff | tree | snapshot
2015-02-06 elserjAdd error checking for db creation statement commit | commitdiff | tree | snapshot
2015-01-10 elserjProper detection on lines that only contain a * commit | commitdiff | tree | snapshot
2014-12-16 elserjScripts that can be used together to run inParanoid... commit | commitdiff | tree | snapshot
2014-12-16 elserjSwitch to using DBIFloret commit | commitdiff | tree | snapshot
2014-12-16 elserjAdd synonym entries commit | commitdiff | tree | snapshot
2014-12-16 elserjFix file handle name and wildcard db query commit | commitdiff | tree | snapshot
2014-12-16 elserjFix split on tab commit | commitdiff | tree | snapshot
2014-12-16 elserjAdd source and progress indicator commit | commitdiff | tree | snapshot
2014-12-16 elserjGeneralize species input so that script doesn't have... commit | commitdiff | tree | snapshot
2014-12-16 elserjUpdated to work with all species in the 9_9_13 folder... commit | commitdiff | tree | snapshot
2014-12-16 elserjUse proper file handles, add a die if can't open file... commit | commitdiff | tree | snapshot
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