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old-jaiswallab-svn/.git
2015-05-14
elserj
Testing write access
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2015-05-14
elserj
Added folder for Chris's temperature logger
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2015-04-27
elserj
New script that creates a fasta file with no isoforms...
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2015-02-20
elserj
Fix Ectocarpus field separator
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2015-02-19
elserj
Script that will use supercluster table to generate...
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2015-02-19
albader
updated assembly scripts $ test
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2015-02-19
albader
full assembly script-Chia
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2015-02-18
albader
test comment
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2015-02-18
albader
adding my first shell scripts for chia (round 1)
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2015-02-18
albader
my new Personnel folder for holding scripts
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2015-02-17
elserj
Add progress indicator
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2015-02-17
elserj
Add section that skips T.cacao transcripts
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2015-02-17
elserj
Added species hash list to check against and will only...
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2015-02-16
elserj
Fix monococcum field separators
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2015-02-16
elserj
T.cacao genes <=> symbols
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2015-02-16
elserj
Fix Cannabis field seperator
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2015-02-16
elserj
Script that can fix InParanoid sqltable files that...
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2015-02-16
elserj
Fix incorrect separator for T.cacao
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2015-02-16
elserj
Fix a couple more incorrect gene names
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2015-02-16
elserj
Fix broken synonyms for Glycine max
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2015-02-16
elserj
Fix incorrect C.elegans gene names
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2015-02-11
elserj
Fix misspelling
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2015-02-11
elserj
Fix misspellings and shorten B.sylvaticum.Corvallis...
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2015-02-06
elserj
Shorten B.sylvaticum.Corvallis name so that database...
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2015-02-06
elserj
Add error checking for db creation statement
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2015-01-10
elserj
Proper detection on lines that only contain a *
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2014-12-16
elserj
Scripts that can be used together to run inParanoid...
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2014-12-16
elserj
Switch to using DBIFloret
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2014-12-16
elserj
Add synonym entries
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2014-12-16
elserj
Fix file handle name and wildcard db query
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2014-12-16
elserj
Fix split on tab
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2014-12-16
elserj
Add source and progress indicator
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2014-12-16
elserj
Generalize species input so that script doesn't have...
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2014-12-16
elserj
Updated to work with all species in the 9_9_13 folder...
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2014-12-16
elserj
Use proper file handles, add a die if can't open file...
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2014-10-29
preecej
updates for JBMS MS
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2014-10-29
preecej
updates for JBMS MS
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2014-10-29
preecej
updates for JBMS MS
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2014-10-29
preecej
updates for JBMS MS
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2014-10-28
preecej
updates for AISO JBMS MS
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2014-10-28
preecej
updates for AISO JBMS MS
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2014-10-28
preecej
AISO MS updates
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2014-10-28
preecej
edits to align with instructions in AISO manuscript
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2014-08-12
preecej
The generation of the MSU-RAP dictionary now accepts...
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2014-08-11
elserj
Fixed species names with dots or commas in names
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2014-07-22
elserj
Added species
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2014-07-03
preecej
...and the post-exercise script for 1.pl
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2014-07-03
preecej
Added STEM 2014 camp scripts. Draft stage.
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2014-06-12
elserj
Added code that generates the actual venn diagram image...
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2014-04-15
preecej
diagram conditional size adjustment
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2014-04-15
preecej
added percentage coverage comparisons, more captioning...
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2014-04-14
preecej
now saves Venn figure files as PNG (and also generates...
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2014-04-14
preecej
enhanced Venn args, wip: projection diagram
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2014-04-11
preecej
added Venn generator
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2014-04-10
preecej
wip: venn diagram output
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2014-04-05
preecej
complete refactor of projection comparison code; added...
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2014-04-04
preecej
added ensembl confidence flag
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2014-04-02
preecej
now generates optional reactome projection output files
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2014-04-02
preecej
wip: joining list of projections and prefixing at same...
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2014-03-29
preecej
wip
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2014-03-29
preecej
wip: reactome output files
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2014-03-28
preecej
wip: generate_reactome_files option
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2014-03-28
preecej
added projection prefix option
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2014-03-26
preecej
finished optional uniprot mapping
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2014-03-25
preecej
wip: uniprot substitution for ref loci
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2014-03-22
preecej
major revision completed: now accepts all input as...
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2014-03-21
pankaj
text edits
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2014-03-21
pankaj
fixed superscripts identifying source: gramene, naithan...
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2014-03-21
preecej
rename program to make it more generic
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2014-03-21
elserj
Updated version numbers to match pathway tools 18.0
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2014-03-21
preecej
WIP, not building at the moment. refactoring to accept...
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2014-03-20
pankaj
svn path=/; revision=553
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2014-03-20
pankaj
svn path=/; revision=552
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2014-03-20
pankaj
added image link for logo
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2014-03-20
pankaj
pathways website logo
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2014-03-20
pankaj
spell check and rephrased the metabolic.html link
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2014-03-20
pankaj
added fragaria
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2014-03-20
pankaj
updated the content
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2014-03-20
pankaj
added addition Cycs and updated hyperlinks
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2014-03-20
pankaj
fragariacyc logo
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2014-03-20
pankaj
eucalypcyc logo
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2014-03-20
pankaj
vitiscyc logo
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2014-03-20
pankaj
metabolic pathway database and species listing
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2014-03-20
pankaj
added image folder
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2014-03-20
pankaj
test changes
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2014-03-20
elserj
Added pathways website folder for Pankaj with shell...
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2014-03-14
elserj
Added Triticum turgidum
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2014-03-14
elserj
Fixed Zea and added new species
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2014-03-11
preecej
Performance improvement. Changed dictionary lookup...
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2014-03-08
preecej
mods for projected species flexibility
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2014-03-08
preecej
major development complete; now testing w/ different...
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2014-03-07
preecej
completed first draft of ensembl projection 50% recipro...
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2014-03-07
preecej
wip
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2014-03-05
preecej
draft of os loc 2 at mapping mashup
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2014-03-05
preecej
svn path=/; revision=530
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2014-02-20
elserj
Fixed incorrect mays gene naming
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2014-02-15
elserj
Added 4 new Oryza species from Pankaj
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2014-02-14
elserj
Updated for new species and fixed a couple of regex...
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2014-02-10
patapanp
svn path=/; revision=526
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2014-02-03
patapanp
Combined label is changed to Segmented Sucessfuly.
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